Wall clock time and date at job start Mon Mar 30 2020 02:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47346 * 294.99616 * 9 7 6 11 11 N 1.46500 * 109.47607 * 180.02562 * 10 9 7 12 12 C 1.36941 * 120.00227 * 180.02562 * 11 10 9 13 13 H 1.07996 * 119.99964 * 359.97438 * 12 11 10 14 14 C 1.38805 * 119.99767 * 179.97438 * 12 11 10 15 15 N 1.31627 * 120.00314 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99924 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.47554 * 90.00070 * 16 14 12 18 18 H 1.48502 * 109.47173 * 210.00562 * 16 14 12 19 19 H 1.48500 * 109.46836 * 329.99780 * 16 14 12 20 20 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 21 21 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 23 23 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 24 24 H 1.08998 * 109.46505 * 59.99871 * 4 2 1 25 25 H 1.08996 * 109.46884 * 300.00752 * 4 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 27 27 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 29 29 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 30 30 H 1.09004 * 109.47610 * 54.99797 * 9 7 6 31 31 H 1.09001 * 109.47532 * 174.99616 * 9 7 6 32 32 H 1.09003 * 109.47378 * 300.00347 * 10 9 7 33 33 H 1.09000 * 109.46984 * 60.00320 * 10 9 7 34 34 H 0.96997 * 119.99904 * 359.97438 * 11 10 9 35 35 H 0.97001 * 119.99638 * 179.97438 * 15 14 12 36 36 H 1.09002 * 109.47045 * 59.99942 * 20 2 1 37 37 H 1.09001 * 109.47375 * 299.99867 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9331 0.3054 -1.2497 9 6 4.0785 -1.4441 -2.4987 10 6 5.6033 -1.3373 -2.5638 11 7 6.0906 -2.0281 -3.7603 12 6 7.4326 -2.0658 -4.0303 13 1 8.1317 -1.5860 -3.3614 14 6 7.8943 -2.7209 -5.1636 15 7 7.0423 -3.3053 -5.9791 16 14 9.7249 -2.7718 -5.5324 17 1 10.3247 -3.9725 -4.8972 18 1 9.9324 -2.8330 -7.0015 19 1 10.3728 -1.5499 -4.9916 20 6 2.0400 -0.7213 -1.2492 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.6766 -1.7488 1.2493 25 1 1.6765 -0.2074 2.1392 26 1 3.9333 -1.2360 2.1388 27 1 3.9336 0.3058 1.2488 28 1 5.1695 -1.4441 -0.0002 29 1 3.7158 -2.4709 0.0000 30 1 3.7894 -2.4942 -2.4546 31 1 3.6438 -0.9847 -3.3864 32 1 5.8924 -0.2872 -2.6079 33 1 6.0379 -1.7969 -1.6762 34 1 5.4628 -2.4594 -4.3608 35 1 7.3650 -3.7627 -6.7713 36 1 1.6766 -0.2075 -2.1392 37 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070532401.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:11 Heat of formation + Delta-G solvation = -52.385223 kcal Electronic energy + Delta-G solvation = -14122.312781 eV Core-core repulsion = 11897.154173 eV Total energy + Delta-G solvation = -2225.158608 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00796 -36.96514 -34.72598 -33.00730 -32.22288 -28.92672 -27.14970 -25.68034 -23.30727 -22.85236 -21.07202 -20.59408 -19.09959 -16.77188 -16.11650 -15.97155 -15.60112 -15.31718 -15.02484 -14.73273 -14.45361 -14.02477 -13.27079 -13.15105 -12.90285 -12.78576 -12.65925 -12.56585 -12.30025 -12.12684 -11.88861 -11.81069 -11.77685 -11.57699 -11.25556 -10.97398 -10.77600 -10.71523 -9.01727 -7.96993 -5.26734 1.45966 1.48657 1.57238 2.55058 3.36305 3.66466 3.81431 3.87600 4.13343 4.17278 4.27105 4.44401 4.52850 4.58582 4.64198 4.65754 4.81463 4.83587 4.85209 4.88546 5.04154 5.06132 5.15273 5.23219 5.25636 5.31045 5.37646 5.43320 5.46945 5.48058 5.52843 5.57007 5.70260 6.25751 7.31006 8.07490 8.31235 9.26965 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.068021 B = 0.005244 C = 0.004986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.536875 B = 5338.189231 C = 5613.948980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.075 4.075 8 H 0.067 0.933 9 C -0.110 4.110 10 C 0.151 3.849 11 N -0.750 5.750 12 C -0.251 4.251 13 H 0.074 0.926 14 C -0.077 4.077 15 N -0.971 5.971 16 Si 0.977 3.023 17 H -0.285 1.285 18 H -0.293 1.293 19 H -0.269 1.269 20 C -0.105 4.105 21 H 0.053 0.947 22 H 0.063 0.937 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.072 0.928 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.014 0.986 33 H 0.023 0.977 34 H 0.373 0.627 35 H 0.252 0.748 36 H 0.059 0.941 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.909 6.631 14.717 20.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.154 4.154 7 C -0.094 4.094 8 H 0.086 0.914 9 C -0.147 4.147 10 C 0.025 3.975 11 N -0.393 5.393 12 C -0.382 4.382 13 H 0.092 0.908 14 C -0.269 4.269 15 N -0.622 5.622 16 Si 0.806 3.194 17 H -0.212 1.212 18 H -0.219 1.219 19 H -0.194 1.194 20 C -0.143 4.143 21 H 0.072 0.928 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.040 0.960 34 H 0.204 0.796 35 H 0.061 0.939 36 H 0.078 0.922 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.736 6.687 14.766 20.012 hybrid contribution 0.870 -0.444 -0.878 1.314 sum -10.865 6.243 13.888 18.706 Atomic orbital electron populations 1.21808 0.94480 1.01896 1.01996 1.21125 0.95954 0.99385 0.94423 0.91321 1.21585 0.94944 1.00656 0.97620 1.21520 0.96137 1.00600 0.97063 1.21622 1.00024 0.99192 0.94514 1.21014 0.95957 0.99107 0.93287 0.91419 1.21659 0.94247 1.00424 0.98418 1.20873 0.93806 0.94294 0.88515 1.42663 1.04591 1.65405 1.26640 1.19677 0.85238 1.27819 1.05495 0.90757 1.25632 1.02402 1.01107 0.97722 1.69834 1.34794 1.41989 1.15604 0.85084 0.79609 0.78089 0.76647 1.21165 1.21901 1.19362 1.21604 0.93825 1.00719 0.98108 0.92780 0.91826 0.92707 0.92227 0.90936 0.91456 0.91923 0.92904 0.92589 0.92786 0.92729 0.96786 0.95958 0.79591 0.93891 0.92213 0.92329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.19 71.98 0.66 -1.57 16 2 C -0.09 -1.65 2.72 -10.79 -0.03 -1.68 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.11 -1.92 5.20 30.60 0.16 -1.76 16 5 C -0.12 -2.28 5.92 30.59 0.18 -2.10 16 6 C -0.12 -2.92 4.96 30.59 0.15 -2.77 16 7 C -0.07 -1.99 2.19 -10.81 -0.02 -2.01 16 8 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 9 C -0.11 -3.77 4.80 30.59 0.15 -3.62 16 10 C 0.15 6.47 6.01 86.38 0.52 6.99 16 11 N -0.75 -40.76 5.60 -343.46 -1.92 -42.69 16 12 C -0.25 -14.71 9.99 84.03 0.84 -13.87 16 13 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 15 N -0.97 -61.32 13.06 21.65 0.28 -61.04 16 16 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 20 C -0.10 -2.36 4.48 30.58 0.14 -2.22 16 21 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.06 0.83 8.14 -2.38 -0.02 0.82 16 23 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.48 6.57 -2.39 -0.02 1.46 16 29 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.02 0.96 6.57 -2.39 -0.02 0.94 16 34 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 35 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 36 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -64.60 289.57 3.89 -60.71 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.29 Total: 22.47 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.21 Total: -28.71 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -1.64 Total: -103.73 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -64.60 3.89 -60.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070532401.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.328 kcal (2) G-P(sol) polarization free energy of solvation -64.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds