Wall clock time and date at job start Mon Mar 30 2020 03:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 115.55403 * 2 1 4 4 C 1.53002 * 117.51502 * 145.69463 * 2 1 3 5 5 C 1.53000 * 117.50014 * 214.32255 * 2 1 3 6 6 H 1.09004 * 117.49577 * 0.02562 * 5 2 1 7 7 C 1.52997 * 117.50132 * 144.99830 * 5 2 1 8 8 N 1.46899 * 109.47254 * 185.00097 * 7 5 2 9 9 C 1.46902 * 111.00255 * 293.95367 * 8 7 5 10 10 C 1.46901 * 111.00103 * 169.99667 * 8 7 5 11 11 C 1.52995 * 109.47356 * 189.99936 * 10 8 7 12 12 C 1.52999 * 109.47409 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00056 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99685 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46853 * 59.99915 * 17 15 13 19 19 H 1.48496 * 109.47074 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47194 * 300.00503 * 17 15 13 21 21 H 1.08995 * 109.47210 * 205.67382 * 1 2 3 22 22 H 1.09003 * 109.47221 * 325.67556 * 1 2 3 23 23 H 1.08999 * 109.47289 * 85.67672 * 1 2 3 24 24 H 1.08995 * 117.50308 * 359.97438 * 4 2 1 25 25 H 1.09004 * 117.49837 * 214.96778 * 4 2 1 26 26 H 1.09002 * 109.47153 * 65.00094 * 7 5 2 27 27 H 1.09001 * 109.46832 * 305.00284 * 7 5 2 28 28 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 29 29 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 31 31 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 32 32 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 33 33 H 1.08998 * 109.47352 * 300.00633 * 11 10 8 34 34 H 1.09008 * 109.46769 * 60.00179 * 11 10 8 35 35 H 1.09002 * 109.46999 * 299.99979 * 12 11 10 36 36 H 1.08997 * 109.46893 * 59.99931 * 12 11 10 37 37 H 0.96999 * 119.99919 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1209 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6112 -1.8580 -1.2690 7 6 3.5487 -0.7755 -1.4720 8 7 4.0095 -1.9372 -2.2441 9 6 4.3732 -3.0492 -1.3557 10 6 5.1312 -1.5753 -3.1209 11 6 5.4202 -2.7299 -4.0823 12 6 6.5889 -2.3532 -4.9950 13 6 6.8731 -3.4902 -5.9424 14 1 6.2798 -4.3915 -5.8976 15 6 7.8913 -3.3803 -6.8656 16 7 8.6141 -2.2828 -6.9197 17 14 8.2441 -4.7898 -8.0394 18 1 7.0393 -5.0602 -8.8645 19 1 9.3783 -4.4242 -8.9253 20 1 8.5944 -6.0056 -7.2620 21 1 -0.3633 -0.9262 0.4452 22 1 -0.3634 0.8487 0.5795 23 1 -0.3634 0.0775 -1.0247 24 1 1.6120 -1.8583 1.2685 25 1 3.1721 -0.8749 1.2678 26 1 4.3021 -0.5103 -0.7303 27 1 3.3884 0.0672 -2.1444 28 1 3.5041 -3.3431 -0.7671 29 1 4.7103 -3.8962 -1.9532 30 1 5.1745 -2.7334 -0.6877 31 1 4.8733 -0.6832 -3.6915 32 1 6.0158 -1.3764 -2.5157 33 1 5.6782 -3.6220 -3.5116 34 1 4.5356 -2.9288 -4.6874 35 1 6.3313 -1.4610 -5.5657 36 1 7.4733 -2.1545 -4.3896 37 1 9.3302 -2.2053 -7.5694 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082648552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:27 Heat of formation + Delta-G solvation = 3.568107 kcal Electronic energy + Delta-G solvation = -13701.646870 eV Core-core repulsion = 11478.914580 eV Total energy + Delta-G solvation = -2222.732290 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.65770 -36.57158 -33.54740 -31.35687 -29.12064 -27.15990 -26.83698 -24.11705 -21.79741 -20.84233 -20.21992 -19.72735 -16.26755 -15.67732 -15.19324 -15.01157 -14.36477 -14.17922 -13.60758 -13.30551 -13.14500 -12.45414 -12.28112 -12.01064 -11.73971 -11.54479 -11.42738 -11.30319 -11.08102 -10.74948 -10.53039 -10.48498 -10.02839 -9.77475 -9.55289 -9.26721 -9.01710 -8.30151 -8.01460 -5.95760 -3.97706 3.36477 3.40324 3.43282 3.64307 4.14563 4.50220 4.67014 4.78621 4.91886 5.15406 5.35474 5.39835 5.50217 5.53878 5.62335 5.63720 5.70160 5.74216 5.79672 5.87861 5.94547 6.10072 6.11515 6.20339 6.28939 6.38343 6.76121 6.83665 7.17704 7.42718 7.46901 7.72986 7.88628 8.05057 8.48590 9.09389 9.65973 11.15752 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.076616 B = 0.004414 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.369058 B = 6341.496472 C = 6405.868269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.156 4.156 3 H 0.101 0.899 4 C -0.181 4.181 5 C -0.136 4.136 6 H 0.112 0.888 7 C 0.084 3.916 8 N -0.541 5.541 9 C 0.025 3.975 10 C 0.055 3.945 11 C -0.105 4.105 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.060 0.940 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.019 0.981 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.047 0.953 34 H 0.055 0.945 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.379 3.357 13.815 18.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.174 4.174 3 H 0.119 0.881 4 C -0.218 4.218 5 C -0.155 4.155 6 H 0.130 0.870 7 C -0.044 4.044 8 N -0.265 5.265 9 C -0.123 4.123 10 C -0.072 4.072 11 C -0.143 4.143 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.048 0.952 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.037 0.963 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.611 3.285 13.419 18.706 hybrid contribution 1.025 -0.437 -0.122 1.121 sum -11.586 2.848 13.297 17.865 Atomic orbital electron populations 1.21340 0.92930 1.01632 1.01886 1.22370 0.95178 0.94650 1.05249 0.88103 1.23214 1.02358 1.01478 0.94756 1.22425 0.98819 1.01379 0.92827 0.87044 1.21676 0.93575 0.93503 0.95670 1.62036 1.36691 1.07008 1.20757 1.22394 0.99136 0.95066 0.95720 1.22305 0.90138 1.00086 0.94646 1.21654 1.00308 0.95640 0.96661 1.19074 0.92044 0.96847 0.93646 1.21228 1.15806 1.01685 1.16951 0.92724 1.25031 0.96157 0.95807 0.97537 1.69961 1.20980 1.26507 1.36245 0.86653 0.77772 0.82636 0.80911 1.20216 1.21334 1.20276 0.92687 0.92424 0.92104 0.89068 0.89216 0.95183 0.90646 0.91938 0.90830 0.96253 0.91322 0.95448 0.93431 0.92612 0.96621 0.96864 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 10.19 37.16 0.38 -0.62 16 2 C -0.16 -1.51 6.13 -90.62 -0.56 -2.06 16 3 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 4 C -0.18 -1.78 9.82 -26.73 -0.26 -2.04 16 5 C -0.14 -1.55 4.52 -90.62 -0.41 -1.96 16 6 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 7 C 0.08 1.11 5.24 -3.83 -0.02 1.09 16 8 N -0.54 -8.55 4.76 -242.92 -1.16 -9.70 16 9 C 0.03 0.36 9.18 60.07 0.55 0.91 16 10 C 0.06 1.01 4.96 -3.83 -0.02 0.99 16 11 C -0.10 -2.26 5.08 -26.73 -0.14 -2.39 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 14 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 15 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 16 N -0.90 -27.47 13.29 55.43 0.74 -26.74 16 17 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 21 H 0.05 0.43 7.90 -51.93 -0.41 0.02 16 22 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.09 0.82 8.05 -51.93 -0.42 0.40 16 25 H 0.09 0.87 8.03 -51.93 -0.42 0.45 16 26 H 0.03 0.39 7.85 -51.93 -0.41 -0.01 16 27 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 28 H 0.06 0.79 7.28 -51.93 -0.38 0.42 16 29 H 0.07 1.13 6.30 -51.93 -0.33 0.80 16 30 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 32 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 33 H 0.05 1.01 6.47 -51.93 -0.34 0.67 16 34 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 LS Contribution 300.63 15.07 4.53 4.53 Total: -1.00 -30.09 300.63 -8.80 -38.88 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.86 Total: -4.50 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -1.02 Total: -19.49 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: -0.42 Total: -36.44 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.09 -8.80 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082648552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.452 kcal (2) G-P(sol) polarization free energy of solvation -30.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds