Wall clock time and date at job start Mon Mar 30 2020 03:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 115.55403 * 2 1 4 4 C 1.53002 * 117.51502 * 145.69463 * 2 1 3 5 5 C 1.53000 * 117.50014 * 214.32255 * 2 1 3 6 6 H 1.09004 * 117.49577 * 0.02562 * 5 2 1 7 7 C 1.52997 * 117.50132 * 144.99830 * 5 2 1 8 8 N 1.46899 * 109.47254 * 185.00097 * 7 5 2 9 9 C 1.46902 * 111.00255 * 293.95367 * 8 7 5 10 10 C 1.46901 * 111.00103 * 169.99667 * 8 7 5 11 11 C 1.52995 * 109.47356 * 189.99936 * 10 8 7 12 12 C 1.52999 * 109.47409 * 180.02562 * 11 10 8 13 13 C 1.50701 * 109.47319 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99853 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00056 * 180.02562 * 13 12 11 16 16 N 1.31518 * 119.99685 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00158 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.46853 * 59.99915 * 17 15 13 19 19 H 1.48496 * 109.47074 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47194 * 300.00503 * 17 15 13 21 21 H 1.08995 * 109.47210 * 205.67382 * 1 2 3 22 22 H 1.09003 * 109.47221 * 325.67556 * 1 2 3 23 23 H 1.08999 * 109.47289 * 85.67672 * 1 2 3 24 24 H 1.08995 * 117.50308 * 359.97438 * 4 2 1 25 25 H 1.09004 * 117.49837 * 214.96778 * 4 2 1 26 26 H 1.09002 * 109.47153 * 65.00094 * 7 5 2 27 27 H 1.09001 * 109.46832 * 305.00284 * 7 5 2 28 28 H 1.09005 * 109.46528 * 59.99744 * 9 8 7 29 29 H 1.09000 * 109.46785 * 179.97438 * 9 8 7 30 30 H 1.08997 * 109.47044 * 300.00388 * 9 8 7 31 31 H 1.08998 * 109.47407 * 310.00536 * 10 8 7 32 32 H 1.09007 * 109.46608 * 69.99971 * 10 8 7 33 33 H 1.08998 * 109.47352 * 300.00633 * 11 10 8 34 34 H 1.09008 * 109.46769 * 60.00179 * 11 10 8 35 35 H 1.09002 * 109.46999 * 299.99979 * 12 11 10 36 36 H 1.08997 * 109.46893 * 59.99931 * 12 11 10 37 37 H 0.96999 * 119.99919 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9833 0.0000 4 6 2.2368 -1.1209 0.7648 5 6 2.2365 -1.1208 -0.7652 6 1 1.6112 -1.8580 -1.2690 7 6 3.5487 -0.7755 -1.4720 8 7 4.0095 -1.9372 -2.2441 9 6 4.3732 -3.0492 -1.3557 10 6 5.1312 -1.5753 -3.1209 11 6 5.4202 -2.7299 -4.0823 12 6 6.5889 -2.3532 -4.9950 13 6 6.8731 -3.4902 -5.9424 14 1 6.2798 -4.3915 -5.8976 15 6 7.8913 -3.3803 -6.8656 16 7 8.6141 -2.2828 -6.9197 17 14 8.2441 -4.7898 -8.0394 18 1 7.0393 -5.0602 -8.8645 19 1 9.3783 -4.4242 -8.9253 20 1 8.5944 -6.0056 -7.2620 21 1 -0.3633 -0.9262 0.4452 22 1 -0.3634 0.8487 0.5795 23 1 -0.3634 0.0775 -1.0247 24 1 1.6120 -1.8583 1.2685 25 1 3.1721 -0.8749 1.2678 26 1 4.3021 -0.5103 -0.7303 27 1 3.3884 0.0672 -2.1444 28 1 3.5041 -3.3431 -0.7671 29 1 4.7103 -3.8962 -1.9532 30 1 5.1745 -2.7334 -0.6877 31 1 4.8733 -0.6832 -3.6915 32 1 6.0158 -1.3764 -2.5157 33 1 5.6782 -3.6220 -3.5116 34 1 4.5356 -2.9288 -4.6874 35 1 6.3313 -1.4610 -5.5657 36 1 7.4733 -2.1545 -4.3896 37 1 9.3302 -2.2053 -7.5694 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082648552.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:26 Heat of formation + Delta-G solvation = -13.703165 kcal Electronic energy + Delta-G solvation = -13702.395808 eV Core-core repulsion = 11478.914580 eV Total energy + Delta-G solvation = -2223.481228 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.66981 -37.76795 -35.55800 -33.26237 -30.07704 -28.65575 -28.10032 -25.78201 -23.34756 -21.78846 -21.50857 -21.01285 -18.46753 -16.84791 -16.63572 -16.24323 -16.10421 -15.45285 -14.80540 -14.50472 -14.24754 -13.89463 -13.66082 -13.42186 -13.10712 -12.90053 -12.69463 -12.56796 -12.45362 -12.32998 -12.21281 -12.08011 -11.44394 -11.36589 -11.17355 -10.76482 -10.57235 -10.54330 -9.28114 -8.19942 -6.31256 1.40119 1.43712 1.51658 2.41289 2.78335 3.03356 3.12935 3.80998 3.97703 4.05521 4.15947 4.28638 4.33260 4.47872 4.51005 4.60579 4.71342 4.75683 4.87239 4.92347 4.94622 4.97993 5.00128 5.05433 5.08798 5.22458 5.26654 5.33327 5.48275 5.52165 5.73979 5.85620 6.09507 6.20127 6.28199 6.85265 7.37908 8.91938 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.076616 B = 0.004414 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 365.369058 B = 6341.496472 C = 6405.868269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.149 4.149 3 H 0.104 0.896 4 C -0.172 4.172 5 C -0.149 4.149 6 H 0.103 0.897 7 C 0.086 3.914 8 N -0.548 5.548 9 C 0.027 3.973 10 C 0.066 3.934 11 C -0.089 4.089 12 C 0.025 3.975 13 C -0.545 4.545 14 H 0.059 0.941 15 C -0.001 4.001 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.266 1.266 21 H 0.059 0.941 22 H 0.069 0.931 23 H 0.058 0.942 24 H 0.102 0.898 25 H 0.091 0.909 26 H 0.033 0.967 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.061 0.939 30 H 0.022 0.978 31 H 0.066 0.934 32 H 0.023 0.977 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.008 1.008 36 H -0.010 1.010 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.385 2.613 14.515 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.167 4.167 3 H 0.122 0.878 4 C -0.209 4.209 5 C -0.167 4.167 6 H 0.122 0.878 7 C -0.042 4.042 8 N -0.272 5.272 9 C -0.121 4.121 10 C -0.062 4.062 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.583 4.583 14 H 0.077 0.923 15 C -0.199 4.199 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.191 1.191 19 H -0.207 1.207 20 H -0.191 1.191 21 H 0.078 0.922 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.120 0.880 25 H 0.110 0.890 26 H 0.051 0.949 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.010 0.990 36 H 0.008 0.992 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.636 2.540 14.138 19.806 hybrid contribution 1.326 -0.162 -0.305 1.370 sum -12.310 2.378 13.833 18.669 Atomic orbital electron populations 1.21361 0.91851 1.02474 1.02066 1.22474 0.96031 0.94415 1.03828 0.87815 1.23270 1.02635 1.01616 0.93398 1.22260 0.98023 1.02701 0.93760 0.87847 1.21699 0.94606 0.92403 0.95488 1.61987 1.35224 1.08361 1.21637 1.22405 1.00148 0.94106 0.95460 1.22035 0.91126 0.98451 0.94543 1.21399 0.97889 0.97029 0.96397 1.18975 0.93036 0.95487 0.93727 1.21669 1.16306 1.02464 1.17821 0.92261 1.26008 0.95774 0.98722 0.99401 1.70095 1.21512 1.28698 1.37151 0.85477 0.77923 0.79069 0.78444 1.19140 1.20719 1.19109 0.92229 0.91169 0.92338 0.87964 0.89028 0.94893 0.90967 0.89925 0.92012 0.95926 0.91500 0.95845 0.93072 0.93022 0.98990 0.99182 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.73 10.19 71.98 0.73 -1.00 16 2 C -0.15 -2.57 6.13 -10.79 -0.07 -2.63 16 3 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 4 C -0.17 -2.97 9.82 30.59 0.30 -2.67 16 5 C -0.15 -3.14 4.52 -10.79 -0.05 -3.19 16 6 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 7 C 0.09 2.18 5.24 86.30 0.45 2.63 16 8 N -0.55 -16.87 4.76 -922.45 -4.39 -21.27 16 9 C 0.03 0.74 9.18 127.69 1.17 1.91 16 10 C 0.07 2.42 4.96 86.30 0.43 2.85 16 11 C -0.09 -3.89 5.08 30.59 0.16 -3.73 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 14 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 15 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 16 N -0.93 -58.00 13.29 21.45 0.28 -57.72 16 17 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 21 H 0.06 0.80 7.90 -2.39 -0.02 0.78 16 22 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 23 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.10 1.55 8.05 -2.39 -0.02 1.53 16 25 H 0.09 1.56 8.03 -2.38 -0.02 1.54 16 26 H 0.03 0.82 7.85 -2.39 -0.02 0.80 16 27 H 0.07 1.86 7.93 -2.39 -0.02 1.84 16 28 H 0.08 1.94 7.28 -2.38 -0.02 1.92 16 29 H 0.06 1.84 6.30 -2.39 -0.02 1.83 16 30 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 2.45 7.93 -2.39 -0.02 2.43 16 32 H 0.02 0.87 8.12 -2.38 -0.02 0.85 16 33 H 0.05 2.17 6.47 -2.39 -0.02 2.16 16 34 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 35 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 36 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -63.88 300.63 2.88 -61.00 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 0.99 Total: 6.60 kcal Atomic # 6 Polarization: -39.65 SS G_CDS: 3.97 Total: -35.68 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -4.11 Total: -78.98 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -63.88 2.88 -61.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082648552.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.295 kcal (2) G-P(sol) polarization free energy of solvation -63.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds