Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.52999 * 109.47317 * 179.97438 * 4 2 1 6 6 C 1.53005 * 109.47159 * 300.00546 * 5 4 2 7 7 H 1.09002 * 109.46935 * 299.99411 * 6 5 4 8 8 N 1.46905 * 109.46858 * 179.97438 * 6 5 4 9 9 C 1.46897 * 110.99940 * 84.99687 * 8 6 5 10 10 C 1.50707 * 109.46929 * 179.97438 * 9 8 6 11 11 H 1.07997 * 119.99684 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99855 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00011 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99793 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46984 * 60.00407 * 14 12 10 16 16 H 1.48504 * 109.46961 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47082 * 299.99872 * 14 12 10 18 18 C 1.52997 * 109.47452 * 59.99536 * 6 5 4 19 19 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 20 20 H 1.08992 * 109.47399 * 300.00166 * 19 2 1 21 21 C 1.53001 * 109.46886 * 60.00670 * 19 2 1 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 25 25 H 1.08996 * 109.47853 * 300.00202 * 4 2 1 26 26 H 1.09002 * 109.47153 * 60.00231 * 4 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 5 4 2 28 28 H 1.09002 * 109.46716 * 60.00091 * 5 4 2 29 29 H 1.00894 * 110.99842 * 321.04344 * 8 6 5 30 30 H 1.08992 * 109.47487 * 300.00141 * 9 8 6 31 31 H 1.09003 * 109.47270 * 60.00180 * 9 8 6 32 32 H 0.97008 * 119.99749 * 180.02562 * 13 12 10 33 33 H 1.08993 * 109.47194 * 179.97438 * 18 6 5 34 34 H 1.09002 * 109.46695 * 59.99734 * 18 6 5 35 35 H 1.09002 * 109.47508 * 59.99571 * 21 19 2 36 36 H 1.09000 * 109.47437 * 180.02562 * 21 19 2 37 37 H 1.09001 * 109.47109 * 299.99380 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7218 1.2491 6 6 4.0795 -1.4434 -0.0002 7 1 3.7158 -2.4710 0.0000 8 7 5.5485 -1.4434 -0.0007 9 6 6.0752 -2.5666 0.7861 10 6 7.5817 -2.5341 0.7620 11 1 8.0963 -1.7565 0.2171 12 6 8.3029 -3.4969 1.4356 13 7 7.6761 -4.4441 2.0987 14 14 10.1702 -3.4561 1.4064 15 1 10.6465 -2.1768 1.9909 16 1 10.7026 -4.5924 2.2006 17 1 10.6458 -3.5672 0.0041 18 6 3.5696 -0.7222 -1.2495 19 6 2.0401 -0.7213 -1.2492 20 1 1.6768 -1.7489 -1.2492 21 6 1.5302 0.0000 -2.4985 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2075 2.1393 26 1 1.6766 -1.7489 1.2493 27 1 3.9332 -1.2360 2.1388 28 1 3.9336 0.3057 1.2488 29 1 5.9102 -0.5643 0.3372 30 1 5.7260 -2.4846 1.8153 31 1 5.7256 -3.5059 0.3576 32 1 8.1835 -5.1213 2.5730 33 1 3.9330 -1.2360 -2.1394 34 1 3.9333 0.3053 -1.2496 35 1 1.8935 1.0277 -2.4985 36 1 1.8931 -0.5141 -3.3885 37 1 0.4402 0.0000 -2.4986 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082836118.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -58.001948 kcal Electronic energy + Delta-G solvation = -14392.918654 eV Core-core repulsion = 12167.516486 eV Total energy + Delta-G solvation = -2225.402168 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.30113 -36.85580 -34.71885 -33.02560 -31.94471 -28.72384 -27.54036 -25.63521 -23.68251 -22.70210 -21.56254 -20.55989 -18.56539 -16.81503 -16.29727 -15.67340 -15.51193 -15.30912 -14.99306 -14.82290 -14.24339 -13.62406 -13.54363 -13.38325 -12.87714 -12.78697 -12.63871 -12.61361 -12.56971 -12.32308 -12.08684 -11.81397 -11.67499 -11.40704 -11.33122 -10.95041 -10.82194 -10.65371 -9.03496 -8.23330 -6.35310 1.40044 1.44238 1.52249 2.39379 3.09458 3.50043 3.73349 3.85382 4.08199 4.13065 4.25647 4.44211 4.55715 4.60646 4.65020 4.76097 4.78467 4.92505 4.95911 5.02470 5.07114 5.15571 5.17039 5.20153 5.23038 5.27121 5.32745 5.38915 5.54409 5.60028 5.62478 5.67284 6.02361 6.47436 6.73859 6.90154 7.35959 8.88088 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062419 B = 0.005943 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.473198 B = 4710.057403 C = 4947.080167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.105 4.105 5 C -0.141 4.141 6 C 0.084 3.916 7 H 0.044 0.956 8 N -0.687 5.687 9 C 0.212 3.788 10 C -0.539 4.539 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.935 5.935 14 Si 0.975 3.025 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.268 1.268 18 C -0.090 4.090 19 C -0.084 4.084 20 H 0.059 0.941 21 C -0.142 4.142 22 H 0.051 0.949 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.070 0.930 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.333 0.667 30 H -0.039 1.039 31 H -0.007 1.007 32 H 0.265 0.735 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.051 0.949 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.268 9.970 -4.882 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.100 4.100 3 H 0.091 0.909 4 C -0.143 4.143 5 C -0.180 4.180 6 C -0.026 4.026 7 H 0.062 0.938 8 N -0.316 5.316 9 C 0.084 3.916 10 C -0.577 4.577 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.575 5.575 14 Si 0.799 3.201 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.128 4.128 19 C -0.103 4.103 20 H 0.078 0.922 21 C -0.199 4.199 22 H 0.070 0.930 23 H 0.078 0.922 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.151 0.849 30 H -0.022 1.022 31 H 0.011 0.989 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.180 9.468 -5.387 17.099 hybrid contribution 0.916 -0.330 1.273 1.603 sum -12.264 9.138 -4.114 15.837 Atomic orbital electron populations 1.21858 0.93910 1.01933 1.02421 1.21131 0.96362 0.99211 0.93268 0.90911 1.21521 0.93402 1.00634 0.98778 1.22176 0.97702 1.00454 0.97669 1.21634 0.87584 0.98092 0.95287 0.93775 1.60663 1.06443 1.06338 1.58131 1.19162 0.94333 0.89056 0.89024 1.21550 0.92302 1.12434 1.31399 0.91762 1.25991 1.04532 0.94692 0.94548 1.70098 1.37907 1.15626 1.33914 0.85349 0.78284 0.77946 0.78493 1.18989 1.20683 1.19298 1.21467 0.95194 1.00053 0.96082 1.21129 0.93803 0.99602 0.95742 0.92207 1.21831 1.01573 1.00310 0.96168 0.92987 0.92228 0.91193 0.91102 0.92862 0.94852 0.91407 0.84940 1.02170 0.98926 0.92597 0.92807 0.91774 0.92291 0.92956 0.91088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.84 71.98 0.64 -1.79 16 2 C -0.08 -1.74 2.25 -10.79 -0.02 -1.76 16 3 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.11 -2.70 5.20 30.59 0.16 -2.54 16 5 C -0.14 -4.61 5.17 30.60 0.16 -4.45 16 6 C 0.08 3.13 2.47 44.92 0.11 3.24 16 7 H 0.04 1.83 7.80 -2.39 -0.02 1.81 16 8 N -0.69 -31.09 6.24 -495.56 -3.09 -34.18 16 9 C 0.21 11.90 5.24 85.56 0.45 12.35 16 10 C -0.54 -31.78 9.32 25.60 0.24 -31.54 16 11 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 12 C 0.00 0.03 5.46 84.65 0.46 0.49 16 13 N -0.94 -57.98 13.29 21.45 0.28 -57.70 16 14 Si 0.98 45.13 29.54 68.60 2.03 47.16 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 16 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 C -0.09 -2.67 4.81 30.58 0.15 -2.53 16 19 C -0.08 -1.96 2.25 -10.81 -0.02 -1.99 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.14 -2.63 8.84 71.98 0.64 -1.99 16 22 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.07 1.00 6.43 -2.39 -0.02 0.98 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.03 1.26 7.45 -2.39 -0.02 1.25 16 28 H 0.07 2.06 8.13 -2.39 -0.02 2.04 16 29 H 0.33 14.33 8.46 -89.70 -0.76 13.57 16 30 H -0.04 -2.36 7.43 -2.39 -0.02 -2.38 16 31 H -0.01 -0.46 8.06 -2.39 -0.02 -0.47 16 32 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 33 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.07 1.09 6.43 -2.39 -0.02 1.07 16 Total: -1.00 -64.50 287.96 2.42 -62.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: 0.25 Total: 15.15 kcal Atomic # 6 Polarization: -35.46 SS G_CDS: 2.95 Total: -32.51 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -2.81 Total: -91.88 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -64.50 2.42 -62.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082836118.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.078 kcal (2) G-P(sol) polarization free energy of solvation -64.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds