Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46817 * 2 1 4 4 C 1.53006 * 109.47033 * 119.99481 * 2 1 3 5 5 C 1.52996 * 109.47033 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47150 * 300.00292 * 5 4 2 7 7 H 1.09001 * 109.46867 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.46947 * 299.99811 * 6 5 4 9 9 C 1.46904 * 111.00202 * 275.00137 * 8 6 5 10 10 C 1.50697 * 109.46891 * 180.02562 * 9 8 6 11 11 H 1.07991 * 120.00449 * 359.72239 * 10 9 8 12 12 C 1.37885 * 119.99686 * 180.02562 * 10 9 8 13 13 N 1.31514 * 120.00035 * 179.72339 * 12 10 9 14 14 Si 1.86803 * 119.99853 * 359.72191 * 12 10 9 15 15 H 1.48500 * 109.46986 * 90.00256 * 14 12 10 16 16 H 1.48496 * 109.47029 * 210.00273 * 14 12 10 17 17 H 1.48499 * 109.47352 * 330.00102 * 14 12 10 18 18 C 1.52991 * 109.47121 * 60.00164 * 6 5 4 19 19 C 1.52995 * 109.47059 * 239.99674 * 2 1 3 20 20 H 1.08997 * 109.47573 * 299.99864 * 19 2 1 21 21 C 1.52995 * 109.47404 * 60.00375 * 19 2 1 22 22 H 1.09006 * 109.47336 * 180.02562 * 1 2 3 23 23 H 1.09007 * 109.47366 * 300.00439 * 1 2 3 24 24 H 1.08999 * 109.47182 * 60.00701 * 1 2 3 25 25 H 1.08997 * 109.47060 * 300.00050 * 4 2 1 26 26 H 1.08997 * 109.46895 * 60.00567 * 4 2 1 27 27 H 1.08995 * 109.47558 * 180.02562 * 5 4 2 28 28 H 1.08997 * 109.47118 * 60.00062 * 5 4 2 29 29 H 1.00899 * 111.00328 * 38.95790 * 8 6 5 30 30 H 1.08998 * 109.47046 * 59.99771 * 9 8 6 31 31 H 1.09001 * 109.47014 * 299.99971 * 9 8 6 32 32 H 0.97000 * 119.99706 * 179.97438 * 13 12 10 33 33 H 1.08997 * 109.47447 * 60.00047 * 18 6 5 34 34 H 1.09006 * 109.47363 * 179.97438 * 18 6 5 35 35 H 1.08996 * 109.47632 * 179.97438 * 21 19 2 36 36 H 1.09001 * 109.46897 * 299.99611 * 21 19 2 37 37 H 1.08997 * 109.47396 * 59.99749 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5699 -0.7217 1.2490 6 6 4.0794 -1.4434 -0.0002 7 1 5.1694 -1.4442 -0.0002 8 7 3.5893 -2.8282 0.0002 9 6 4.4728 -3.6992 0.7869 10 6 3.9394 -5.1084 0.7637 11 1 3.0322 -5.3336 0.2228 12 6 4.6062 -6.1091 1.4382 13 7 4.1378 -7.3379 1.4225 14 14 6.1751 -5.7195 2.3743 15 1 5.8379 -5.3439 3.7709 16 1 7.0566 -6.9145 2.3822 17 1 6.8781 -4.5903 1.7141 18 6 3.5695 -0.7222 -1.2494 19 6 2.0399 -0.7213 -1.2492 20 1 1.6767 -1.7490 -1.2492 21 6 1.5300 -0.0001 -2.4984 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 1.6766 -0.2073 2.1393 26 1 1.6767 -1.7488 1.2494 27 1 3.9333 -1.2358 2.1388 28 1 3.9336 0.3058 1.2487 29 1 2.6399 -2.8757 0.3387 30 1 4.5126 -3.3422 1.8160 31 1 5.4747 -3.6832 0.3578 32 1 4.6072 -8.0420 1.8968 33 1 3.9332 0.3053 -1.2497 34 1 3.9328 -1.2361 -2.1394 35 1 1.8937 -0.5137 -3.3884 36 1 0.4400 -0.0002 -2.4985 37 1 1.8934 1.0275 -2.4985 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082836121.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = -49.921800 kcal Electronic energy + Delta-G solvation = -14741.650520 eV Core-core repulsion = 12516.598734 eV Total energy + Delta-G solvation = -2225.051786 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54295 -36.55993 -34.65831 -32.94020 -32.19241 -28.81265 -27.67536 -26.09943 -23.41164 -22.68485 -21.58535 -19.90460 -18.87553 -17.01736 -16.18532 -15.78925 -15.50864 -15.38017 -15.07740 -14.62680 -14.53090 -13.85390 -13.74513 -13.28859 -12.79397 -12.76377 -12.68218 -12.62012 -12.45026 -12.20320 -12.05672 -11.77488 -11.72407 -11.50077 -11.10584 -10.87716 -10.81864 -10.71488 -9.03296 -8.31995 -6.36039 1.31611 1.34066 1.45590 2.32049 3.01957 3.56955 3.82502 3.85409 3.91382 4.25024 4.28775 4.48267 4.53713 4.61834 4.69884 4.71833 4.82603 4.86003 4.91322 5.00522 5.04578 5.06865 5.14253 5.19835 5.23639 5.25489 5.34205 5.44077 5.51191 5.59162 5.61562 5.73867 6.00860 6.60470 6.67988 6.81639 7.29217 8.84981 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043826 B = 0.007504 C = 0.007394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 638.731034 B = 3730.642952 C = 3786.147004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.078 4.078 3 H 0.081 0.919 4 C -0.115 4.115 5 C -0.144 4.144 6 C 0.076 3.924 7 H 0.061 0.939 8 N -0.682 5.682 9 C 0.176 3.824 10 C -0.528 4.528 11 H 0.035 0.965 12 C 0.008 3.992 13 N -0.947 5.947 14 Si 0.951 3.049 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.252 1.252 18 C -0.092 4.092 19 C -0.087 4.087 20 H 0.051 0.949 21 C -0.141 4.141 22 H 0.042 0.958 23 H 0.059 0.941 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.335 0.665 30 H -0.018 1.018 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.062 0.938 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.082 18.761 -2.287 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.096 4.096 3 H 0.099 0.901 4 C -0.153 4.153 5 C -0.183 4.183 6 C -0.034 4.034 7 H 0.079 0.921 8 N -0.314 5.314 9 C 0.048 3.952 10 C -0.566 4.566 11 H 0.053 0.947 12 C -0.190 4.190 13 N -0.588 5.588 14 Si 0.775 3.225 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.176 1.176 18 C -0.130 4.130 19 C -0.105 4.105 20 H 0.069 0.931 21 C -0.198 4.198 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.000 1.000 31 H 0.039 0.961 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.757 18.422 -2.839 18.842 hybrid contribution 0.377 -0.551 1.382 1.535 sum -2.380 17.870 -1.457 18.087 Atomic orbital electron populations 1.21880 0.94758 1.01449 1.02339 1.21102 0.95823 0.99372 0.93293 0.90060 1.21583 0.94813 1.00004 0.98878 1.22128 0.96801 1.01526 0.97834 1.21703 0.98421 0.87910 0.95385 0.92082 1.60581 1.05799 1.07046 1.58004 1.19734 0.93524 0.91259 0.90721 1.21367 1.10601 0.93316 1.31350 0.94692 1.25888 1.01378 0.94524 0.97172 1.70056 1.41999 1.02022 1.44724 0.85652 0.79140 0.78496 0.79248 1.19120 1.20430 1.17573 1.21507 0.95696 0.99496 0.96305 1.21077 0.94946 0.99145 0.95370 0.93094 1.21826 1.01242 1.00399 0.96375 0.93926 0.92146 0.91236 0.90952 0.93980 0.93961 0.89737 0.84474 1.00001 0.96140 0.92340 0.90254 0.92864 0.93351 0.91920 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.84 71.98 0.64 -2.26 16 2 C -0.08 -1.71 2.25 -10.79 -0.02 -1.73 16 3 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 4 C -0.12 -3.01 4.95 30.59 0.15 -2.86 16 5 C -0.14 -4.07 5.52 30.59 0.17 -3.90 16 6 C 0.08 2.49 2.86 44.91 0.13 2.62 16 7 H 0.06 2.07 7.80 -2.39 -0.02 2.06 16 8 N -0.68 -28.87 5.75 -495.58 -2.85 -31.72 16 9 C 0.18 8.77 4.31 85.56 0.37 9.13 16 10 C -0.53 -31.70 9.87 25.60 0.25 -31.44 16 11 H 0.03 2.33 8.06 -2.92 -0.02 2.30 16 12 C 0.01 0.47 5.47 84.66 0.46 0.93 16 13 N -0.95 -60.47 13.96 21.45 0.30 -60.17 16 14 Si 0.95 45.23 27.47 68.60 1.88 47.12 16 15 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 16 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.25 -11.28 6.54 99.48 0.65 -10.63 16 18 C -0.09 -2.49 4.92 30.58 0.15 -2.34 16 19 C -0.09 -2.18 2.01 -10.81 -0.02 -2.20 16 20 H 0.05 1.59 7.21 -2.39 -0.02 1.57 16 21 C -0.14 -2.84 8.84 71.98 0.64 -2.21 16 22 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 23 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 24 H 0.07 1.17 6.43 -2.39 -0.02 1.16 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.04 1.31 6.25 -2.39 -0.01 1.30 16 27 H 0.04 1.34 7.45 -2.39 -0.02 1.32 16 28 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.34 14.20 5.56 -89.69 -0.50 13.71 16 30 H -0.02 -0.86 6.87 -2.39 -0.02 -0.87 16 31 H 0.02 1.03 7.10 -2.39 -0.02 1.02 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.06 1.15 6.43 -2.39 -0.02 1.13 16 37 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -65.71 278.50 2.71 -63.01 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.46 Total: 18.02 kcal Atomic # 6 Polarization: -39.16 SS G_CDS: 2.91 Total: -36.25 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -2.55 Total: -91.89 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.88 Total: 47.12 kcal Total: -65.71 2.71 -63.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082836121.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.083 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds