Wall clock time and date at job start Mon Mar 30 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46896 * 2 1 4 4 C 1.53001 * 109.47342 * 120.00029 * 2 1 3 5 5 C 1.52994 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47134 * 299.99759 * 5 4 2 7 7 H 1.08991 * 109.47502 * 300.00146 * 6 5 4 8 8 C 1.52997 * 109.47134 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.46763 * 60.00213 * 6 5 4 10 10 H 1.08997 * 109.46694 * 180.02562 * 9 6 5 11 11 N 1.46895 * 109.47174 * 59.99931 * 9 6 5 12 12 C 1.46904 * 111.00014 * 155.00047 * 11 9 6 13 13 C 1.50701 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.52997 * 109.46807 * 299.99602 * 9 6 5 22 22 H 1.09000 * 109.46896 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47301 * 299.99707 * 1 2 3 24 24 H 1.09001 * 109.47140 * 59.99973 * 1 2 3 25 25 H 1.09003 * 109.46820 * 300.00686 * 4 2 1 26 26 H 1.09000 * 109.46932 * 59.99618 * 4 2 1 27 27 H 1.09000 * 109.47018 * 59.99914 * 5 4 2 28 28 H 1.09001 * 109.47110 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.47856 * 300.00294 * 8 6 5 30 30 H 1.09001 * 109.46795 * 60.00431 * 8 6 5 31 31 H 1.08997 * 109.47089 * 179.97438 * 8 6 5 32 32 H 1.00901 * 110.99972 * 278.95051 * 11 9 6 33 33 H 1.09000 * 109.47038 * 59.99386 * 12 11 9 34 34 H 1.09007 * 109.46566 * 299.99918 * 12 11 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.46795 * 180.02562 * 21 9 6 37 37 H 1.09000 * 109.47856 * 300.00332 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4416 0.0003 7 1 3.7177 -2.4693 0.0000 8 6 5.6105 -1.4405 0.0003 9 6 3.5705 -0.7203 -1.2490 10 1 3.9339 -1.2341 -2.1389 11 7 4.0597 0.6648 -1.2486 12 6 4.1225 1.2013 -2.6148 13 6 4.6281 2.6204 -2.5744 14 1 4.8773 3.0781 -1.6285 15 6 4.7664 3.3363 -3.7445 16 7 4.4626 2.7791 -4.8964 17 14 5.3857 5.0980 -3.6939 18 1 6.7429 5.1285 -3.0920 19 1 5.4447 5.6418 -5.0745 20 1 4.4623 5.9240 -2.8751 21 6 2.0406 -0.7209 -1.2492 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2074 2.1392 26 1 1.6767 -1.7489 1.2492 27 1 3.9330 0.3071 1.2498 28 1 3.9334 -1.2341 2.1398 29 1 5.9732 -0.4126 0.0003 30 1 5.9742 -1.9541 0.8903 31 1 5.9742 -1.9545 -0.8894 32 1 3.4892 1.2496 -0.6565 33 1 3.1272 1.1821 -3.0588 34 1 4.7993 0.5917 -3.2136 35 1 4.5596 3.2829 -5.7195 36 1 1.6772 -0.2075 -2.1394 37 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082858003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:51 Heat of formation + Delta-G solvation = -35.790668 kcal Electronic energy + Delta-G solvation = -14806.052129 eV Core-core repulsion = 12581.613115 eV Total energy + Delta-G solvation = -2224.439014 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.19771 -34.28458 -33.29213 -32.04592 -29.29461 -28.06531 -25.78477 -23.84045 -22.23456 -21.66383 -20.25983 -18.35164 -16.37093 -15.11397 -14.91822 -14.39032 -14.04525 -13.80680 -13.59380 -12.91833 -12.58856 -12.16508 -12.07330 -11.78650 -11.65960 -11.35170 -11.21454 -11.10997 -10.83527 -10.67546 -10.61210 -10.30630 -10.05673 -9.89103 -9.73529 -9.47406 -9.07697 -8.43787 -7.12952 -5.99250 -4.00796 3.35221 3.39045 3.42170 4.45986 4.97712 4.99320 5.09510 5.36334 5.38754 5.42751 5.50980 5.69863 5.80474 5.83421 5.88926 5.94846 6.01059 6.09346 6.17880 6.21714 6.29659 6.36429 6.41544 6.51125 6.54465 6.71083 6.74459 6.85914 7.02186 7.35958 7.53004 7.83998 8.20254 8.50555 8.71787 9.09100 9.63931 11.11713 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033139 B = 0.008276 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.710456 B = 3382.424709 C = 3721.717617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.076 4.076 7 H 0.055 0.945 8 C -0.136 4.136 9 C 0.089 3.911 10 H 0.068 0.932 11 N -0.679 5.679 12 C 0.195 3.805 13 C -0.512 4.512 14 H 0.060 0.940 15 C 0.056 3.944 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.142 4.142 22 H 0.049 0.951 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.036 0.964 31 H 0.045 0.955 32 H 0.328 0.672 33 H -0.015 1.015 34 H 0.025 0.975 35 H 0.261 0.739 36 H 0.062 0.938 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.749 -7.542 10.119 13.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.150 4.150 6 C -0.095 4.095 7 H 0.074 0.926 8 C -0.193 4.193 9 C -0.022 4.022 10 H 0.086 0.914 11 N -0.311 5.311 12 C 0.068 3.932 13 C -0.551 4.551 14 H 0.078 0.922 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.214 1.214 20 H -0.203 1.203 21 C -0.181 4.181 22 H 0.068 0.932 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.147 0.853 33 H 0.003 0.997 34 H 0.043 0.957 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.076 -7.674 9.919 13.187 hybrid contribution -0.691 1.071 -0.420 1.342 sum -4.767 -6.603 9.499 12.512 Atomic orbital electron populations 1.21807 0.95827 1.01153 1.01360 1.21114 0.94878 1.00191 0.95051 0.90812 1.21569 0.96183 0.99907 0.97116 1.21545 0.94629 1.01777 0.97071 1.21072 0.96015 0.97516 0.94894 0.92621 1.21677 0.95045 1.03077 0.99545 1.21511 0.91078 0.92682 0.96917 0.91395 1.60783 1.55296 1.00593 1.14408 1.19544 0.95039 0.94767 0.83843 1.21163 1.43423 0.97469 0.93022 0.92178 1.24978 0.95724 0.98419 0.95442 1.69952 1.49002 1.37175 0.97677 0.86581 0.79441 0.84636 0.76837 1.20208 1.21397 1.20337 1.22231 0.98296 0.99972 0.97608 0.93190 0.93115 0.92794 0.92667 0.92682 0.90963 0.93005 0.90745 0.94474 0.93629 0.85287 0.99725 0.95691 0.92952 0.91927 0.92674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 2 C -0.09 -1.35 2.47 -90.62 -0.22 -1.57 16 3 H 0.07 1.19 6.26 -51.93 -0.32 0.87 16 4 C -0.11 -1.41 5.20 -26.73 -0.14 -1.55 16 5 C -0.11 -1.56 4.96 -26.73 -0.13 -1.69 16 6 C -0.08 -1.14 2.54 -90.62 -0.23 -1.37 16 7 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 8 C -0.14 -2.09 9.03 37.16 0.34 -1.76 16 9 C 0.09 1.59 2.30 -67.71 -0.16 1.43 16 10 H 0.07 1.31 7.80 -51.93 -0.41 0.90 16 11 N -0.68 -14.35 4.99 -107.99 -0.54 -14.89 16 12 C 0.19 5.11 5.24 -4.97 -0.03 5.09 16 13 C -0.51 -14.59 9.32 -34.44 -0.32 -14.91 16 14 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 15 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 16 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 17 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 C -0.14 -2.28 4.80 -26.73 -0.13 -2.41 16 22 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.11 7.21 -51.93 -0.37 0.73 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 1.30 7.60 -51.93 -0.39 0.91 16 30 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.33 6.76 5.56 -39.29 -0.22 6.54 16 33 H -0.02 -0.42 7.44 -51.93 -0.39 -0.81 16 34 H 0.02 0.71 8.06 -51.93 -0.42 0.30 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 36 H 0.06 1.14 7.45 -51.93 -0.39 0.75 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 284.56 15.07 4.29 4.29 Total: -1.00 -28.93 284.56 -7.99 -36.92 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.68 Total: 1.86 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: -0.78 Total: -18.72 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.20 Total: -41.25 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -28.93 -7.99 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082858003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.133 kcal (2) G-P(sol) polarization free energy of solvation -28.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds