Wall clock time and date at job start Mon Mar 30 2020 02:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46896 * 2 1 4 4 C 1.53001 * 109.47342 * 120.00029 * 2 1 3 5 5 C 1.52994 * 109.47312 * 180.02562 * 4 2 1 6 6 C 1.53001 * 109.47134 * 299.99759 * 5 4 2 7 7 H 1.08991 * 109.47502 * 300.00146 * 6 5 4 8 8 C 1.52997 * 109.47134 * 179.97438 * 6 5 4 9 9 C 1.53008 * 109.46763 * 60.00213 * 6 5 4 10 10 H 1.08997 * 109.46694 * 180.02562 * 9 6 5 11 11 N 1.46895 * 109.47174 * 59.99931 * 9 6 5 12 12 C 1.46904 * 111.00014 * 155.00047 * 11 9 6 13 13 C 1.50701 * 109.47195 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99761 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99694 * 180.27796 * 13 12 11 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 12 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 12 18 18 H 1.48504 * 109.47266 * 60.00049 * 17 15 13 19 19 H 1.48504 * 109.46970 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47383 * 299.99456 * 17 15 13 21 21 C 1.52997 * 109.46807 * 299.99602 * 9 6 5 22 22 H 1.09000 * 109.46896 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47301 * 299.99707 * 1 2 3 24 24 H 1.09001 * 109.47140 * 59.99973 * 1 2 3 25 25 H 1.09003 * 109.46820 * 300.00686 * 4 2 1 26 26 H 1.09000 * 109.46932 * 59.99618 * 4 2 1 27 27 H 1.09000 * 109.47018 * 59.99914 * 5 4 2 28 28 H 1.09001 * 109.47110 * 179.97438 * 5 4 2 29 29 H 1.09000 * 109.47856 * 300.00294 * 8 6 5 30 30 H 1.09001 * 109.46795 * 60.00431 * 8 6 5 31 31 H 1.08997 * 109.47089 * 179.97438 * 8 6 5 32 32 H 1.00901 * 110.99972 * 278.95051 * 11 9 6 33 33 H 1.09000 * 109.47038 * 59.99386 * 12 11 9 34 34 H 1.09007 * 109.46566 * 299.99918 * 12 11 9 35 35 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.46795 * 180.02562 * 21 9 6 37 37 H 1.09000 * 109.47856 * 300.00332 * 21 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7207 1.2495 6 6 4.0806 -1.4416 0.0003 7 1 3.7177 -2.4693 0.0000 8 6 5.6105 -1.4405 0.0003 9 6 3.5705 -0.7203 -1.2490 10 1 3.9339 -1.2341 -2.1389 11 7 4.0597 0.6648 -1.2486 12 6 4.1225 1.2013 -2.6148 13 6 4.6281 2.6204 -2.5744 14 1 4.8773 3.0781 -1.6285 15 6 4.7664 3.3363 -3.7445 16 7 4.4626 2.7791 -4.8964 17 14 5.3857 5.0980 -3.6939 18 1 6.7429 5.1285 -3.0920 19 1 5.4447 5.6418 -5.0745 20 1 4.4623 5.9240 -2.8751 21 6 2.0406 -0.7209 -1.2492 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6766 -0.2074 2.1392 26 1 1.6767 -1.7489 1.2492 27 1 3.9330 0.3071 1.2498 28 1 3.9334 -1.2341 2.1398 29 1 5.9732 -0.4126 0.0003 30 1 5.9742 -1.9541 0.8903 31 1 5.9742 -1.9545 -0.8894 32 1 3.4892 1.2496 -0.6565 33 1 3.1272 1.1821 -3.0588 34 1 4.7993 0.5917 -3.2136 35 1 4.5596 3.2829 -5.7195 36 1 1.6772 -0.2075 -2.1394 37 1 1.6775 -1.7487 -1.2494 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082858003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:51 Heat of formation + Delta-G solvation = -52.732822 kcal Electronic energy + Delta-G solvation = -14806.786796 eV Core-core repulsion = 12581.613115 eV Total energy + Delta-G solvation = -2225.173681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52753 -36.03661 -34.71383 -33.89204 -30.76100 -29.37162 -27.72965 -25.05790 -23.95410 -23.24118 -21.50440 -19.72098 -18.49505 -16.82771 -16.40603 -16.06807 -15.44695 -15.18561 -14.78994 -14.41939 -14.19144 -13.81523 -13.55340 -13.25386 -13.05355 -12.87546 -12.64480 -12.60621 -12.45841 -12.29051 -12.01313 -11.84599 -11.53169 -11.37156 -11.19830 -10.91634 -10.72171 -10.63985 -8.93887 -8.21828 -6.33032 1.39330 1.43150 1.51034 2.39475 3.10917 3.64532 3.80815 3.86787 3.99918 4.21739 4.26751 4.50462 4.61476 4.63801 4.75140 4.77105 4.84928 4.88814 4.99049 5.02972 5.08188 5.15112 5.20598 5.23643 5.27496 5.37715 5.40307 5.49747 5.57220 5.61478 5.63117 5.77876 6.05854 6.53374 6.79016 6.95769 7.38082 8.89405 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.033139 B = 0.008276 C = 0.007522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.710456 B = 3382.424709 C = 3721.717617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.093 4.093 3 H 0.049 0.951 4 C -0.103 4.103 5 C -0.110 4.110 6 C -0.070 4.070 7 H 0.079 0.921 8 C -0.134 4.134 9 C 0.083 3.917 10 H 0.044 0.956 11 N -0.673 5.673 12 C 0.213 3.787 13 C -0.534 4.534 14 H 0.063 0.937 15 C 0.000 4.000 16 N -0.935 5.935 17 Si 0.972 3.028 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.266 1.266 21 C -0.136 4.136 22 H 0.065 0.935 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.052 0.948 28 H 0.076 0.924 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.036 0.964 32 H 0.333 0.667 33 H -0.044 1.044 34 H -0.008 1.008 35 H 0.264 0.736 36 H 0.030 0.970 37 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -7.731 12.233 15.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.112 4.112 3 H 0.068 0.932 4 C -0.140 4.140 5 C -0.148 4.148 6 C -0.089 4.089 7 H 0.097 0.903 8 C -0.191 4.191 9 C -0.027 4.027 10 H 0.062 0.938 11 N -0.305 5.305 12 C 0.085 3.915 13 C -0.572 4.572 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.575 5.575 17 Si 0.796 3.204 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.191 1.191 21 C -0.175 4.175 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.055 0.945 32 H 0.152 0.848 33 H -0.026 1.026 34 H 0.010 0.990 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.471 -7.878 12.057 15.080 hybrid contribution -0.572 1.059 -1.097 1.628 sum -5.042 -6.819 10.960 13.858 Atomic orbital electron populations 1.21769 0.94176 1.02264 1.01527 1.21103 0.96288 0.98770 0.95037 0.93228 1.21536 0.95173 1.00841 0.96492 1.21528 0.95518 1.00644 0.97074 1.21057 0.95706 0.98357 0.93785 0.90299 1.21644 0.95396 1.01570 1.00508 1.21644 0.92576 0.90593 0.97897 0.93784 1.60687 1.56160 1.02258 1.11345 1.19136 0.92394 0.93963 0.85976 1.21523 1.43774 0.98504 0.93378 0.91927 1.25955 0.95623 1.03308 0.94883 1.70092 1.49824 1.39145 0.98443 0.85409 0.79131 0.78688 0.77203 1.19338 1.20781 1.19083 1.22148 0.96725 1.01180 0.97458 0.91577 0.91478 0.94166 0.90899 0.90874 0.92954 0.90556 0.93447 0.91684 0.94500 0.84775 1.02604 0.98988 0.92707 0.95150 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.20 71.98 0.66 -2.60 16 2 C -0.09 -2.57 2.47 -10.79 -0.03 -2.59 16 3 H 0.05 1.60 6.26 -2.39 -0.01 1.59 16 4 C -0.10 -2.30 5.20 30.59 0.16 -2.14 16 5 C -0.11 -2.75 4.96 30.59 0.15 -2.60 16 6 C -0.07 -2.00 2.54 -10.79 -0.03 -2.03 16 7 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 8 C -0.13 -3.98 9.03 71.98 0.65 -3.33 16 9 C 0.08 3.03 2.30 44.92 0.10 3.13 16 10 H 0.04 1.78 7.80 -2.39 -0.02 1.76 16 11 N -0.67 -29.51 4.99 -495.56 -2.47 -31.98 16 12 C 0.21 11.82 5.24 85.56 0.45 12.27 16 13 C -0.53 -31.25 9.32 25.60 0.24 -31.01 16 14 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 15 C 0.00 0.02 5.46 84.65 0.46 0.48 16 16 N -0.93 -57.88 13.29 21.45 0.28 -57.60 16 17 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 C -0.14 -4.38 4.80 30.59 0.15 -4.23 16 22 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 24 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.53 7.21 -2.39 -0.02 1.51 16 28 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.66 7.60 -2.39 -0.02 1.64 16 30 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.33 14.13 5.56 -89.69 -0.50 13.63 16 33 H -0.04 -2.62 7.44 -2.39 -0.02 -2.63 16 34 H -0.01 -0.49 8.06 -2.38 -0.02 -0.51 16 35 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.03 1.15 7.45 -2.39 -0.02 1.13 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -63.94 284.56 3.32 -60.62 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.51 Total: 16.38 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 2.97 Total: -34.66 kcal Atomic # 7 Polarization: -87.39 SS G_CDS: -2.19 Total: -89.58 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.94 3.32 -60.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082858003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.885 kcal (2) G-P(sol) polarization free energy of solvation -63.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds