Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.01861 * 2 1 4 4 C 1.54266 * 110.03137 * 238.61270 * 2 1 3 5 5 C 1.54891 * 104.19488 * 264.27582 * 4 2 1 6 6 C 1.54889 * 102.74990 * 322.06007 * 5 4 2 7 7 H 1.09003 * 110.48432 * 279.13197 * 6 5 4 8 8 N 1.46898 * 110.48986 * 156.62178 * 6 5 4 9 9 C 1.46904 * 111.00074 * 88.23960 * 8 6 5 10 10 C 1.52998 * 109.46861 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.54085 * 110.15623 * 121.34601 * 2 1 3 20 20 H 1.08998 * 110.15780 * 238.48525 * 19 2 1 21 21 C 1.53003 * 110.00562 * 359.97438 * 19 2 1 22 22 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47661 * 299.93676 * 1 2 3 24 24 H 1.09000 * 109.47513 * 59.93484 * 1 2 3 25 25 H 1.08998 * 110.49206 * 145.59990 * 4 2 1 26 26 H 1.08999 * 110.59929 * 23.01075 * 4 2 1 27 27 H 1.09002 * 110.75944 * 203.74536 * 5 4 2 28 28 H 1.09000 * 110.75748 * 80.37054 * 5 4 2 29 29 H 1.00900 * 110.99642 * 324.28984 * 8 6 5 30 30 H 1.09004 * 109.47048 * 60.00131 * 9 8 6 31 31 H 1.08997 * 109.46845 * 300.00295 * 9 8 6 32 32 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 33 33 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 34 34 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47155 * 177.02836 * 21 19 2 36 36 H 1.09003 * 109.47074 * 297.02577 * 21 19 2 37 37 H 1.08999 * 109.47182 * 57.02307 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7548 -1.2373 5 6 2.3292 -2.1895 -0.7199 6 6 2.8890 -1.9399 0.7026 7 1 3.9459 -1.6774 0.6559 8 7 2.6916 -3.1249 1.5480 9 6 3.8223 -4.0545 1.4238 10 6 3.5813 -5.2728 2.3173 11 6 4.7410 -6.2267 2.1894 12 1 5.5674 -5.9877 1.5365 13 6 4.7469 -7.4047 2.9059 14 7 5.7592 -8.2370 2.7947 15 14 3.3172 -7.8186 4.0346 16 1 2.2898 -8.5755 3.2750 17 1 2.7207 -6.5636 4.5585 18 1 3.8043 -8.6457 5.1677 19 6 2.0609 -0.7525 1.2354 20 1 2.6924 -0.0950 1.8329 21 6 0.8916 -1.2653 2.0785 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5128 0.8905 24 1 -0.3634 0.5148 -0.8894 25 1 2.9805 -0.2988 -1.5974 26 1 1.3074 -0.7696 -2.0272 27 1 3.0688 -2.6918 -1.3434 28 1 1.4046 -2.7651 -0.6756 29 1 1.8203 -3.5841 1.3291 30 1 4.7400 -3.5537 1.7326 31 1 3.9155 -4.3766 0.3867 32 1 2.6636 -5.7737 2.0089 33 1 3.4884 -4.9503 3.3543 34 1 5.7632 -9.0658 3.2985 35 1 1.2758 -1.8406 2.9207 36 1 0.3131 -0.4194 2.4500 37 1 0.2528 -1.9009 1.4653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083042925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -25.591766 kcal Electronic energy + Delta-G solvation = -14371.009668 eV Core-core repulsion = 12147.012911 eV Total energy + Delta-G solvation = -2223.996757 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.38264 -35.21214 -32.76965 -31.18364 -30.60202 -28.28556 -25.10753 -24.85983 -23.33535 -20.42728 -20.11954 -18.30507 -16.78427 -16.29743 -15.20272 -14.75603 -14.25778 -13.80340 -13.53210 -12.87500 -12.79026 -12.69434 -12.41004 -12.24816 -12.02844 -11.44508 -11.33397 -10.98057 -10.81757 -10.64431 -10.42666 -10.37199 -10.22748 -10.01920 -9.81672 -9.59600 -9.20054 -8.51444 -7.78696 -6.02315 -4.00386 3.33545 3.41006 3.47269 4.48145 4.48332 4.64035 4.71151 5.05873 5.32335 5.34139 5.36437 5.44761 5.45338 5.54532 5.61963 5.73081 5.81344 5.93590 5.96756 6.00441 6.12243 6.16394 6.28521 6.28865 6.35599 6.41550 6.51077 6.68529 6.81916 7.20289 7.42601 7.68956 7.81375 7.97389 8.55929 9.02084 9.60329 11.11137 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054240 B = 0.006217 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.104531 B = 4503.049161 C = 4798.027362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.095 4.095 3 H 0.065 0.935 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.087 3.913 7 H 0.078 0.922 8 N -0.684 5.684 9 C 0.073 3.927 10 C -0.010 4.010 11 C -0.520 4.520 12 H 0.070 0.930 13 C 0.067 3.933 14 N -0.905 5.905 15 Si 0.881 3.119 16 H -0.278 1.278 17 H -0.263 1.263 18 H -0.288 1.288 19 C -0.082 4.082 20 H 0.067 0.933 21 C -0.136 4.136 22 H 0.059 0.941 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.335 0.665 30 H 0.062 0.938 31 H 0.020 0.980 32 H 0.008 0.992 33 H 0.025 0.975 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 15.615 -5.440 19.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.114 4.114 3 H 0.084 0.916 4 C -0.155 4.155 5 C -0.193 4.193 6 C -0.024 4.024 7 H 0.096 0.904 8 N -0.313 5.313 9 C -0.055 4.055 10 C -0.048 4.048 11 C -0.559 4.559 12 H 0.088 0.912 13 C -0.134 4.134 14 N -0.544 5.544 15 Si 0.709 3.291 16 H -0.204 1.204 17 H -0.188 1.188 18 H -0.215 1.215 19 C -0.101 4.101 20 H 0.086 0.914 21 C -0.194 4.194 22 H 0.078 0.922 23 H 0.074 0.926 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.153 0.847 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.026 0.974 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.090 0.910 36 H 0.062 0.938 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.052 15.731 -4.784 19.272 hybrid contribution -0.739 -0.763 -0.386 1.131 sum -10.791 14.968 -5.170 19.163 Atomic orbital electron populations 1.21950 0.95327 1.01864 1.00897 1.21815 0.95692 0.98881 0.94967 0.91645 1.22334 1.00491 0.95669 0.97005 1.23205 1.00904 0.96781 0.98367 1.22426 0.98940 0.91620 0.89404 0.90412 1.60680 1.05937 1.08743 1.55975 1.21969 0.92332 0.93117 0.98105 1.19544 0.96879 0.92600 0.95748 1.21089 1.05110 1.02839 1.26844 0.91170 1.25012 0.95871 0.96069 0.96494 1.69920 1.30924 1.11077 1.42488 0.86748 0.82899 0.78731 0.80754 1.20435 1.18750 1.21454 1.21770 0.97012 0.95893 0.95423 0.91422 1.21769 0.97041 1.00121 1.00425 0.92243 0.92590 0.93559 0.91906 0.91998 0.91790 0.91585 0.84653 0.91912 0.96129 0.97411 0.95717 0.92761 0.91032 0.93838 0.93092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.88 37.15 0.29 -1.06 16 2 C -0.09 -0.98 3.50 -89.39 -0.31 -1.29 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.24 6.37 -25.07 -0.16 -1.40 16 5 C -0.15 -1.93 6.45 -24.74 -0.16 -2.09 16 6 C 0.09 1.22 3.02 -66.06 -0.20 1.02 16 7 H 0.08 1.15 7.85 -51.93 -0.41 0.75 16 8 N -0.68 -11.49 4.82 -104.98 -0.51 -12.00 16 9 C 0.07 1.49 5.48 -3.82 -0.02 1.47 16 10 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 11 C -0.52 -15.11 9.66 -34.44 -0.33 -15.45 16 12 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -28.32 13.96 55.43 0.77 -27.54 16 15 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 C -0.08 -1.00 3.49 -89.39 -0.31 -1.31 16 20 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.14 -1.65 7.05 37.16 0.26 -1.38 16 22 H 0.06 0.59 6.59 -51.93 -0.34 0.25 16 23 H 0.06 0.50 6.91 -51.93 -0.36 0.14 16 24 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.60 7.85 -51.93 -0.41 0.20 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.07 0.83 7.81 -51.93 -0.41 0.43 16 29 H 0.34 5.42 7.70 -39.29 -0.30 5.11 16 30 H 0.06 1.32 8.08 -51.93 -0.42 0.90 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.01 0.18 7.57 -51.93 -0.39 -0.21 16 33 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 34 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 35 H 0.07 1.00 7.38 -51.93 -0.38 0.62 16 36 H 0.04 0.46 6.97 -51.93 -0.36 0.10 16 37 H 0.05 0.60 6.38 -51.93 -0.33 0.27 16 LS Contribution 283.11 15.07 4.27 4.27 Total: -1.00 -29.98 283.11 -7.90 -37.88 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.61 Total: -0.12 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: -1.16 Total: -19.97 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.27 Total: -39.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.98 -7.90 -37.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.293 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds