Wall clock time and date at job start Mon Mar 30 2020 02:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08998 * 110.01861 * 2 1 4 4 C 1.54266 * 110.03137 * 238.61270 * 2 1 3 5 5 C 1.54891 * 104.19488 * 264.27582 * 4 2 1 6 6 C 1.54889 * 102.74990 * 322.06007 * 5 4 2 7 7 H 1.09003 * 110.48432 * 279.13197 * 6 5 4 8 8 N 1.46898 * 110.48986 * 156.62178 * 6 5 4 9 9 C 1.46904 * 111.00074 * 88.23960 * 8 6 5 10 10 C 1.52998 * 109.46861 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46700 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00803 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99889 * 180.02562 * 11 10 9 14 14 N 1.31520 * 120.00186 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 0.02562 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.54085 * 110.15623 * 121.34601 * 2 1 3 20 20 H 1.08998 * 110.15780 * 238.48525 * 19 2 1 21 21 C 1.53003 * 110.00562 * 359.97438 * 19 2 1 22 22 H 1.09001 * 109.47537 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47661 * 299.93676 * 1 2 3 24 24 H 1.09000 * 109.47513 * 59.93484 * 1 2 3 25 25 H 1.08998 * 110.49206 * 145.59990 * 4 2 1 26 26 H 1.08999 * 110.59929 * 23.01075 * 4 2 1 27 27 H 1.09002 * 110.75944 * 203.74536 * 5 4 2 28 28 H 1.09000 * 110.75748 * 80.37054 * 5 4 2 29 29 H 1.00900 * 110.99642 * 324.28984 * 8 6 5 30 30 H 1.09004 * 109.47048 * 60.00131 * 9 8 6 31 31 H 1.08997 * 109.46845 * 300.00295 * 9 8 6 32 32 H 1.09004 * 109.47139 * 60.00240 * 10 9 8 33 33 H 1.08997 * 109.47675 * 299.99840 * 10 9 8 34 34 H 0.96998 * 120.00124 * 180.02562 * 14 13 11 35 35 H 1.08994 * 109.47155 * 177.02836 * 21 19 2 36 36 H 1.09003 * 109.47074 * 297.02577 * 21 19 2 37 37 H 1.08999 * 109.47182 * 57.02307 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7548 -1.2373 5 6 2.3292 -2.1895 -0.7199 6 6 2.8890 -1.9399 0.7026 7 1 3.9459 -1.6774 0.6559 8 7 2.6916 -3.1249 1.5480 9 6 3.8223 -4.0545 1.4238 10 6 3.5813 -5.2728 2.3173 11 6 4.7410 -6.2267 2.1894 12 1 5.5674 -5.9877 1.5365 13 6 4.7469 -7.4047 2.9059 14 7 5.7592 -8.2370 2.7947 15 14 3.3172 -7.8186 4.0346 16 1 2.2898 -8.5755 3.2750 17 1 2.7207 -6.5636 4.5585 18 1 3.8043 -8.6457 5.1677 19 6 2.0609 -0.7525 1.2354 20 1 2.6924 -0.0950 1.8329 21 6 0.8916 -1.2653 2.0785 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5128 0.8905 24 1 -0.3634 0.5148 -0.8894 25 1 2.9805 -0.2988 -1.5974 26 1 1.3074 -0.7696 -2.0272 27 1 3.0688 -2.6918 -1.3434 28 1 1.4046 -2.7651 -0.6756 29 1 1.8203 -3.5841 1.3291 30 1 4.7400 -3.5537 1.7326 31 1 3.9155 -4.3766 0.3867 32 1 2.6636 -5.7737 2.0089 33 1 3.4884 -4.9503 3.3543 34 1 5.7632 -9.0658 3.2985 35 1 1.2758 -1.8406 2.9207 36 1 0.3131 -0.4194 2.4500 37 1 0.2528 -1.9009 1.4653 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083042925.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:20 Heat of formation + Delta-G solvation = -43.739969 kcal Electronic energy + Delta-G solvation = -14371.796633 eV Core-core repulsion = 12147.012911 eV Total energy + Delta-G solvation = -2224.783722 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.40451 -36.73509 -34.78683 -32.33818 -32.01738 -29.66826 -26.30153 -26.03715 -24.79376 -22.30236 -21.16408 -19.29727 -18.92588 -17.36150 -16.51708 -16.14383 -16.00044 -15.26380 -14.82755 -14.62435 -13.80826 -13.75791 -13.61444 -13.55119 -13.30832 -13.05625 -12.82289 -12.27592 -12.01131 -11.86776 -11.75473 -11.63451 -11.55697 -11.42373 -11.26042 -11.15300 -11.02384 -10.77520 -9.17013 -8.30765 -6.35450 1.35885 1.38676 1.51919 2.36398 3.04852 3.29010 3.70563 3.74454 4.02704 4.35366 4.41340 4.46408 4.48719 4.56904 4.63188 4.67644 4.70096 4.85207 4.91483 4.95842 5.03997 5.09105 5.13977 5.24995 5.30297 5.35124 5.41777 5.45035 5.50112 5.58636 5.63223 5.75526 6.21424 6.27865 6.58130 6.73896 7.29587 8.86108 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054240 B = 0.006217 C = 0.005834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.104531 B = 4503.049161 C = 4798.027362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.076 0.924 4 C -0.112 4.112 5 C -0.151 4.151 6 C 0.081 3.919 7 H 0.066 0.934 8 N -0.681 5.681 9 C 0.088 3.912 10 C -0.003 4.003 11 C -0.535 4.535 12 H 0.030 0.970 13 C 0.005 3.995 14 N -0.952 5.952 15 Si 0.955 3.045 16 H -0.265 1.265 17 H -0.248 1.248 18 H -0.283 1.283 19 C -0.079 4.079 20 H 0.065 0.935 21 C -0.132 4.132 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.341 0.659 30 H 0.050 0.950 31 H 0.014 0.986 32 H 0.018 0.982 33 H 0.022 0.978 34 H 0.267 0.733 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.792 16.939 -5.288 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.095 0.905 4 C -0.150 4.150 5 C -0.190 4.190 6 C -0.029 4.029 7 H 0.084 0.916 8 N -0.311 5.311 9 C -0.041 4.041 10 C -0.041 4.041 11 C -0.573 4.573 12 H 0.048 0.952 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.778 3.222 16 H -0.190 1.190 17 H -0.171 1.171 18 H -0.209 1.209 19 C -0.099 4.099 20 H 0.083 0.917 21 C -0.189 4.189 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.071 0.929 28 H 0.086 0.914 29 H 0.160 0.840 30 H 0.069 0.931 31 H 0.032 0.968 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.469 17.082 -4.648 21.653 hybrid contribution 0.098 -1.147 -0.490 1.251 sum -12.371 15.935 -5.138 20.817 Atomic orbital electron populations 1.21933 0.94296 1.01809 1.01817 1.21791 0.96491 0.99021 0.93559 0.90522 1.22324 1.01185 0.93997 0.97464 1.23145 1.00477 0.98288 0.97112 1.22529 0.98979 0.91148 0.90263 0.91602 1.60611 1.04775 1.08513 1.57158 1.21618 0.93363 0.92430 0.96713 1.19425 0.95181 0.93105 0.96383 1.21425 1.05595 1.04191 1.26131 0.95182 1.26015 0.99025 0.95808 0.98303 1.70070 1.33387 1.11845 1.43927 0.85590 0.79075 0.79115 0.78437 1.19019 1.17123 1.20905 1.21758 0.96765 0.94980 0.96358 0.91664 1.21723 0.97043 1.00532 0.99632 0.92756 0.92052 0.92343 0.91508 0.90655 0.92882 0.91401 0.83975 0.93111 0.96814 0.96407 0.95951 0.92416 0.93135 0.92211 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.88 71.98 0.57 -1.63 16 2 C -0.09 -1.61 3.50 -10.00 -0.03 -1.64 16 3 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 4 C -0.11 -2.09 6.37 31.67 0.20 -1.88 16 5 C -0.15 -3.59 6.45 31.89 0.21 -3.38 16 6 C 0.08 2.20 3.02 45.99 0.14 2.34 16 7 H 0.07 1.94 7.85 -2.39 -0.02 1.92 16 8 N -0.68 -22.29 4.82 -486.04 -2.34 -24.63 16 9 C 0.09 3.61 5.48 86.30 0.47 4.08 16 10 C 0.00 -0.15 4.30 29.85 0.13 -0.02 16 11 C -0.53 -31.78 9.66 25.60 0.25 -31.53 16 12 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 13 C 0.01 0.31 5.47 84.65 0.46 0.78 16 14 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 15 Si 0.95 45.25 27.47 68.60 1.88 47.13 16 16 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 17 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 C -0.08 -1.78 3.49 -10.00 -0.03 -1.82 16 20 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 21 C -0.13 -2.90 7.05 71.98 0.51 -2.40 16 22 H 0.05 0.91 6.59 -2.39 -0.02 0.89 16 23 H 0.06 0.89 6.91 -2.39 -0.02 0.88 16 24 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.07 1.24 7.85 -2.39 -0.02 1.22 16 27 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 28 H 0.07 1.59 7.81 -2.39 -0.02 1.57 16 29 H 0.34 10.52 7.70 -89.69 -0.69 9.83 16 30 H 0.05 2.18 8.08 -2.39 -0.02 2.16 16 31 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 33 H 0.02 1.09 7.20 -2.39 -0.02 1.07 16 34 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 35 H 0.05 1.33 7.38 -2.39 -0.02 1.31 16 36 H 0.06 1.12 6.97 -2.39 -0.02 1.10 16 37 H 0.05 1.15 6.38 -2.39 -0.02 1.14 16 Total: -1.00 -64.68 283.11 2.98 -61.70 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 0.27 Total: 13.37 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 2.86 Total: -37.10 kcal Atomic # 7 Polarization: -83.07 SS G_CDS: -2.04 Total: -85.11 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.88 Total: 47.13 kcal Total: -64.68 2.98 -61.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042925.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.965 kcal (2) G-P(sol) polarization free energy of solvation -64.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds