Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.01655 * 2 1 4 4 C 1.54262 * 110.03340 * 238.60489 * 2 1 3 5 5 C 1.54895 * 104.19601 * 217.05539 * 4 2 1 6 6 C 1.54886 * 102.74707 * 37.94507 * 5 4 2 7 7 H 1.08998 * 110.48991 * 80.86853 * 6 5 4 8 8 N 1.46902 * 110.48580 * 203.38177 * 6 5 4 9 9 C 1.46906 * 110.99573 * 273.54317 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47332 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99871 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00534 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99727 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00639 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99777 * 15 13 11 17 17 H 1.48497 * 109.47267 * 210.00472 * 15 13 11 18 18 H 1.48503 * 109.46510 * 330.00340 * 15 13 11 19 19 C 1.53876 * 110.07066 * 121.41239 * 2 1 3 20 20 H 1.09002 * 110.03287 * 238.59270 * 19 2 1 21 21 C 1.52997 * 110.03524 * 0.02562 * 19 2 1 22 22 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47160 * 299.94277 * 1 2 3 24 24 H 1.09006 * 109.47256 * 59.94225 * 1 2 3 25 25 H 1.09008 * 110.48564 * 98.38163 * 4 2 1 26 26 H 1.08991 * 110.48743 * 335.73552 * 4 2 1 27 27 H 1.08997 * 110.75499 * 279.63213 * 5 4 2 28 28 H 1.09002 * 110.75560 * 156.25846 * 5 4 2 29 29 H 1.00896 * 111.00219 * 37.49956 * 8 6 5 30 30 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 31 31 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 32 32 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 33 33 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 34 34 H 0.97001 * 120.00114 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47109 * 177.16378 * 21 19 2 36 36 H 1.09003 * 109.46787 * 297.16993 * 21 19 2 37 37 H 1.09005 * 109.46948 * 57.16170 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7550 -1.2371 5 6 3.3144 -1.4994 -0.7199 6 6 2.8890 -1.9398 0.7028 7 1 2.2813 -2.8434 0.6568 8 7 4.0705 -2.1587 1.5480 9 6 4.5831 -3.5266 1.3919 10 6 5.8108 -3.7160 2.2850 11 6 6.3363 -5.1194 2.1255 12 1 5.8441 -5.8072 1.4539 13 6 7.4461 -5.5249 2.8360 14 7 8.0458 -4.6872 3.6534 15 14 8.0980 -7.2643 2.6378 16 1 9.0969 -7.2963 1.5395 17 1 8.7401 -7.6996 3.9040 18 1 6.9748 -8.1796 2.3121 19 6 2.0580 -0.7533 1.2335 20 1 2.6874 -0.0947 1.8320 21 6 0.8878 -1.2675 2.0743 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5129 0.8905 24 1 -0.3634 0.5148 -0.8895 25 1 2.3289 -0.0528 -2.0258 26 1 1.3146 -1.4659 -1.5966 27 1 4.1712 -0.8271 -0.6762 28 1 3.5336 -2.3663 -1.3432 29 1 4.7886 -1.4785 1.3489 30 1 3.8103 -4.2393 1.6801 31 1 4.8618 -3.6937 0.3515 32 1 6.5834 -3.0033 1.9966 33 1 5.5325 -3.5488 3.3256 34 1 8.8264 -4.9726 4.1536 35 1 1.2711 -1.8420 2.9175 36 1 0.3073 -0.4224 2.4442 37 1 0.2513 -1.9044 1.4600 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083042929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -32.849877 kcal Electronic energy + Delta-G solvation = -14192.387795 eV Core-core repulsion = 11968.076303 eV Total energy + Delta-G solvation = -2224.311492 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.18505 -35.15788 -32.85319 -31.32929 -30.32314 -28.10698 -24.85084 -24.55743 -23.18179 -20.67905 -20.46500 -18.38764 -16.44879 -15.88824 -15.14566 -14.41374 -14.20178 -13.90799 -13.73193 -13.34893 -12.83897 -12.34751 -12.24256 -11.93099 -11.57167 -11.47284 -11.08020 -10.94257 -10.80229 -10.69134 -10.58207 -10.48164 -10.36324 -10.09391 -9.92369 -9.28866 -9.10491 -8.32719 -7.66929 -5.97266 -3.99694 3.33494 3.39571 3.43122 4.44339 4.57610 4.68099 4.79557 5.08718 5.32689 5.38630 5.41148 5.45798 5.52454 5.58003 5.66870 5.75836 5.84463 5.94118 5.99641 6.04072 6.09624 6.26128 6.28165 6.36705 6.42145 6.48816 6.53661 6.62527 7.02985 7.57933 7.78255 7.88179 8.03377 8.13344 8.47229 9.07747 9.63948 11.14228 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063841 B = 0.005365 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.485645 B = 5217.730800 C = 5344.602973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.067 0.933 4 C -0.116 4.116 5 C -0.157 4.157 6 C 0.089 3.911 7 H 0.077 0.923 8 N -0.685 5.685 9 C 0.067 3.933 10 C 0.025 3.975 11 C -0.521 4.521 12 H 0.054 0.946 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.083 4.083 20 H 0.076 0.924 21 C -0.141 4.141 22 H 0.058 0.942 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.336 0.664 30 H 0.056 0.944 31 H 0.014 0.986 32 H 0.013 0.987 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.079 8.689 -7.538 17.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.085 0.915 4 C -0.154 4.154 5 C -0.196 4.196 6 C -0.022 4.022 7 H 0.096 0.904 8 N -0.314 5.314 9 C -0.061 4.061 10 C -0.013 4.013 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.102 4.102 20 H 0.094 0.906 21 C -0.198 4.198 22 H 0.077 0.923 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.154 0.846 30 H 0.074 0.926 31 H 0.032 0.968 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.068 0.932 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.297 8.531 -6.824 17.209 hybrid contribution 0.926 -0.895 -0.997 1.629 sum -12.371 7.636 -7.821 16.508 Atomic orbital electron populations 1.21973 0.95449 1.01778 1.00974 1.21788 0.95438 0.99112 0.95038 0.91470 1.22350 0.97331 0.98759 0.96957 1.23238 0.97753 0.99970 0.98657 1.22499 0.93074 0.97419 0.89229 0.90437 1.60620 1.08699 1.06002 1.56056 1.22147 0.98717 0.87202 0.98051 1.19071 0.90657 0.96321 0.95237 1.21186 1.12069 0.97709 1.24992 0.92816 1.25001 0.96766 0.97355 0.95234 1.69978 1.20918 1.35037 1.27383 0.86594 0.79062 0.84898 0.77445 1.20721 1.21188 1.19891 1.21749 0.96414 0.96605 0.95440 0.90567 1.21903 0.97526 1.00489 0.99869 0.92284 0.92580 0.93510 0.92247 0.91783 0.91509 0.91840 0.84642 0.92560 0.96759 0.96886 0.95706 0.93023 0.92335 0.93150 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 7.88 37.15 0.29 -1.06 16 2 C -0.09 -1.03 3.50 -89.51 -0.31 -1.34 16 3 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 4 C -0.12 -1.28 6.36 -25.07 -0.16 -1.44 16 5 C -0.16 -2.08 6.41 -24.74 -0.16 -2.24 16 6 C 0.09 1.32 2.69 -66.05 -0.18 1.14 16 7 H 0.08 1.21 7.59 -51.93 -0.39 0.82 16 8 N -0.68 -12.48 6.27 -104.97 -0.66 -13.14 16 9 C 0.07 1.45 5.47 -3.82 -0.02 1.42 16 10 C 0.02 0.65 5.23 -27.89 -0.15 0.51 16 11 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 12 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.89 -27.31 13.29 55.43 0.74 -26.57 16 15 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.08 -1.07 3.24 -89.50 -0.29 -1.36 16 20 H 0.08 1.05 8.04 -51.93 -0.42 0.64 16 21 C -0.14 -1.70 7.89 37.16 0.29 -1.41 16 22 H 0.06 0.56 6.58 -51.93 -0.34 0.22 16 23 H 0.06 0.50 6.91 -51.93 -0.36 0.14 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.68 7.85 -51.93 -0.41 0.27 16 27 H 0.07 0.90 7.82 -51.93 -0.41 0.49 16 28 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.34 5.97 8.30 -39.29 -0.33 5.65 16 30 H 0.06 1.23 8.08 -51.93 -0.42 0.81 16 31 H 0.01 0.30 8.12 -51.93 -0.42 -0.12 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.02 0.71 8.14 -51.92 -0.42 0.29 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.53 6.95 -51.93 -0.36 0.17 16 37 H 0.05 0.60 6.53 -51.93 -0.34 0.26 16 LS Contribution 289.47 15.07 4.36 4.36 Total: -1.00 -29.69 289.47 -8.36 -38.05 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -6.69 Total: -0.06 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -1.09 Total: -19.55 kcal Atomic # 7 Polarization: -39.79 SS G_CDS: 0.08 Total: -39.71 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -29.69 -8.36 -38.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.204 kcal (2) G-P(sol) polarization free energy of solvation -29.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds