Wall clock time and date at job start Mon Mar 30 2020 02:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09007 * 110.01655 * 2 1 4 4 C 1.54262 * 110.03340 * 238.60489 * 2 1 3 5 5 C 1.54895 * 104.19601 * 217.05539 * 4 2 1 6 6 C 1.54886 * 102.74707 * 37.94507 * 5 4 2 7 7 H 1.08998 * 110.48991 * 80.86853 * 6 5 4 8 8 N 1.46902 * 110.48580 * 203.38177 * 6 5 4 9 9 C 1.46906 * 110.99573 * 273.54317 * 8 6 5 10 10 C 1.52998 * 109.47020 * 179.97438 * 9 8 6 11 11 C 1.50696 * 109.47332 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99871 * 0.02562 * 11 10 9 13 13 C 1.37873 * 120.00534 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99727 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00639 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47022 * 89.99777 * 15 13 11 17 17 H 1.48497 * 109.47267 * 210.00472 * 15 13 11 18 18 H 1.48503 * 109.46510 * 330.00340 * 15 13 11 19 19 C 1.53876 * 110.07066 * 121.41239 * 2 1 3 20 20 H 1.09002 * 110.03287 * 238.59270 * 19 2 1 21 21 C 1.52997 * 110.03524 * 0.02562 * 19 2 1 22 22 H 1.08998 * 109.47297 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47160 * 299.94277 * 1 2 3 24 24 H 1.09006 * 109.47256 * 59.94225 * 1 2 3 25 25 H 1.09008 * 110.48564 * 98.38163 * 4 2 1 26 26 H 1.08991 * 110.48743 * 335.73552 * 4 2 1 27 27 H 1.08997 * 110.75499 * 279.63213 * 5 4 2 28 28 H 1.09002 * 110.75560 * 156.25846 * 5 4 2 29 29 H 1.00896 * 111.00219 * 37.49956 * 8 6 5 30 30 H 1.09002 * 109.46991 * 299.99841 * 9 8 6 31 31 H 1.09000 * 109.47202 * 60.00133 * 9 8 6 32 32 H 1.08995 * 109.47213 * 300.00679 * 10 9 8 33 33 H 1.09008 * 109.47264 * 60.00068 * 10 9 8 34 34 H 0.97001 * 120.00114 * 179.97438 * 14 13 11 35 35 H 1.08994 * 109.47109 * 177.16378 * 21 19 2 36 36 H 1.09003 * 109.46787 * 297.16993 * 21 19 2 37 37 H 1.09005 * 109.46948 * 57.16170 * 21 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7550 -1.2371 5 6 3.3144 -1.4994 -0.7199 6 6 2.8890 -1.9398 0.7028 7 1 2.2813 -2.8434 0.6568 8 7 4.0705 -2.1587 1.5480 9 6 4.5831 -3.5266 1.3919 10 6 5.8108 -3.7160 2.2850 11 6 6.3363 -5.1194 2.1255 12 1 5.8441 -5.8072 1.4539 13 6 7.4461 -5.5249 2.8360 14 7 8.0458 -4.6872 3.6534 15 14 8.0980 -7.2643 2.6378 16 1 9.0969 -7.2963 1.5395 17 1 8.7401 -7.6996 3.9040 18 1 6.9748 -8.1796 2.3121 19 6 2.0580 -0.7533 1.2335 20 1 2.6874 -0.0947 1.8320 21 6 0.8878 -1.2675 2.0743 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5129 0.8905 24 1 -0.3634 0.5148 -0.8895 25 1 2.3289 -0.0528 -2.0258 26 1 1.3146 -1.4659 -1.5966 27 1 4.1712 -0.8271 -0.6762 28 1 3.5336 -2.3663 -1.3432 29 1 4.7886 -1.4785 1.3489 30 1 3.8103 -4.2393 1.6801 31 1 4.8618 -3.6937 0.3515 32 1 6.5834 -3.0033 1.9966 33 1 5.5325 -3.5488 3.3256 34 1 8.8264 -4.9726 4.1536 35 1 1.2711 -1.8420 2.9175 36 1 0.3073 -0.4224 2.4442 37 1 0.2513 -1.9044 1.4600 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083042929.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:26 Heat of formation + Delta-G solvation = -50.752042 kcal Electronic energy + Delta-G solvation = -14193.164091 eV Core-core repulsion = 11968.076303 eV Total energy + Delta-G solvation = -2225.087788 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.26206 -36.76150 -34.85353 -32.44320 -31.77462 -29.61492 -26.48345 -25.52361 -24.66033 -22.48704 -21.68432 -19.38907 -18.54265 -17.12603 -16.60698 -16.30654 -15.58477 -15.06869 -14.79740 -14.58398 -14.27504 -14.17386 -13.35663 -13.22670 -13.06318 -12.84786 -12.60626 -12.47006 -12.34130 -12.14241 -11.77609 -11.61781 -11.57486 -11.37739 -11.34971 -11.13854 -10.95836 -10.57223 -9.15771 -8.21026 -6.32904 1.39658 1.41572 1.52799 2.40104 3.12262 3.31435 3.68403 3.79599 3.98643 4.33380 4.42519 4.43576 4.53362 4.59417 4.60299 4.66857 4.74062 4.83254 4.91786 5.02166 5.05115 5.07828 5.11827 5.23174 5.28902 5.32547 5.42283 5.46003 5.52319 5.66957 5.69095 5.79874 6.16497 6.34058 6.57993 6.84375 7.36533 8.91272 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063841 B = 0.005365 C = 0.005238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.485645 B = 5217.730800 C = 5344.602973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.073 0.927 4 C -0.109 4.109 5 C -0.156 4.156 6 C 0.084 3.916 7 H 0.070 0.930 8 N -0.691 5.691 9 C 0.087 3.913 10 C 0.032 3.968 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.968 3.032 16 H -0.271 1.271 17 H -0.281 1.281 18 H -0.263 1.263 19 C -0.081 4.081 20 H 0.064 0.936 21 C -0.137 4.137 22 H 0.058 0.942 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.337 0.663 30 H 0.053 0.947 31 H 0.017 0.983 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.183 8.512 -8.797 18.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.109 4.109 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.195 4.195 6 C -0.026 4.026 7 H 0.089 0.911 8 N -0.320 5.320 9 C -0.041 4.041 10 C -0.006 4.006 11 C -0.584 4.584 12 H 0.078 0.922 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.792 3.208 16 H -0.196 1.196 17 H -0.206 1.206 18 H -0.187 1.187 19 C -0.100 4.100 20 H 0.082 0.918 21 C -0.195 4.195 22 H 0.077 0.923 23 H 0.080 0.920 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.090 0.910 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.155 0.845 30 H 0.071 0.929 31 H 0.035 0.965 32 H 0.009 0.991 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.086 0.914 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.423 8.368 -8.097 18.537 hybrid contribution 1.266 -0.786 -0.581 1.600 sum -13.157 7.581 -8.678 17.490 Atomic orbital electron populations 1.21948 0.93957 1.02053 1.01956 1.21760 0.96634 0.98954 0.93539 0.90806 1.22334 0.96106 0.98922 0.97345 1.23185 0.98950 0.99991 0.97370 1.22612 0.91713 0.98195 0.90046 0.91124 1.60553 1.09587 1.04210 1.57690 1.21740 0.96430 0.89223 0.96755 1.18925 0.92117 0.95212 0.94332 1.21610 1.12677 0.98747 1.25370 0.92240 1.25987 0.96930 1.02189 0.94596 1.70114 1.21457 1.37442 1.28211 0.85406 0.78625 0.79028 0.77728 1.19635 1.20612 1.18741 1.21727 0.96205 0.95624 0.96479 0.91786 1.21886 0.97452 1.01028 0.99091 0.92349 0.92037 0.92167 0.90759 0.91042 0.91804 0.92484 0.84493 0.92860 0.96482 0.99120 0.98886 0.92709 0.94592 0.91389 0.91930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 7.88 71.98 0.57 -1.66 16 2 C -0.09 -1.73 3.50 -10.07 -0.04 -1.77 16 3 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 4 C -0.11 -2.14 6.36 31.67 0.20 -1.94 16 5 C -0.16 -3.96 6.41 31.89 0.20 -3.76 16 6 C 0.08 2.47 2.69 45.99 0.12 2.60 16 7 H 0.07 2.17 7.59 -2.39 -0.02 2.15 16 8 N -0.69 -25.62 6.27 -486.01 -3.05 -28.67 16 9 C 0.09 3.84 5.47 86.30 0.47 4.31 16 10 C 0.03 1.74 5.23 29.85 0.16 1.90 16 11 C -0.55 -31.96 9.11 25.60 0.23 -31.73 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 13 C 0.00 0.05 5.46 84.65 0.46 0.51 16 14 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 15 Si 0.97 44.90 29.54 68.60 2.03 46.92 16 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 18 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 19 C -0.08 -2.00 3.24 -10.07 -0.03 -2.03 16 20 H 0.06 1.73 8.04 -2.39 -0.02 1.71 16 21 C -0.14 -3.15 7.89 71.98 0.57 -2.58 16 22 H 0.06 0.93 6.58 -2.39 -0.02 0.92 16 23 H 0.06 0.91 6.91 -2.39 -0.02 0.89 16 24 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 25 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 26 H 0.07 1.32 7.85 -2.39 -0.02 1.30 16 27 H 0.06 1.66 7.82 -2.39 -0.02 1.64 16 28 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.34 12.28 8.30 -89.70 -0.74 11.53 16 30 H 0.05 2.36 8.08 -2.39 -0.02 2.34 16 31 H 0.02 0.73 8.12 -2.39 -0.02 0.71 16 32 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 34 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.31 6.95 -2.39 -0.02 1.29 16 37 H 0.06 1.30 6.53 -2.38 -0.02 1.29 16 Total: -1.00 -63.86 289.47 2.45 -61.41 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.27 Total: 14.12 kcal Atomic # 6 Polarization: -39.06 SS G_CDS: 2.92 Total: -36.14 kcal Atomic # 7 Polarization: -83.56 SS G_CDS: -2.76 Total: -86.32 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -63.86 2.45 -61.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042929.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.656 kcal (2) G-P(sol) polarization free energy of solvation -63.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds