Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.59807 * 122.61775 * 2 1 3 5 5 H 1.09000 * 110.75339 * 38.36092 * 4 2 1 6 6 N 1.46895 * 110.75897 * 274.99067 * 4 2 1 7 7 C 1.46896 * 111.00232 * 154.99683 * 6 4 2 8 8 C 1.52997 * 109.47345 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47547 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99808 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00549 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00433 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47433 * 89.99775 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00199 * 13 11 9 16 16 H 1.48507 * 109.47107 * 329.99585 * 13 11 9 17 17 C 1.54888 * 102.74611 * 156.67207 * 4 2 1 18 18 C 1.54265 * 104.19721 * 322.05788 * 17 4 2 19 19 C 1.53873 * 106.59997 * 23.61451 * 18 17 4 20 20 H 1.09002 * 110.03017 * 240.71676 * 19 18 17 21 21 C 1.52995 * 110.03536 * 119.28129 * 19 18 17 22 22 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 23 23 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 24 24 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 25 25 H 1.00904 * 110.99732 * 278.95497 * 6 4 2 26 26 H 1.08998 * 109.47530 * 300.00079 * 7 6 4 27 27 H 1.09007 * 109.46797 * 59.99900 * 7 6 4 28 28 H 1.09011 * 109.47151 * 300.00326 * 8 7 6 29 29 H 1.08995 * 109.47202 * 59.99866 * 8 7 6 30 30 H 0.96999 * 119.99692 * 179.97438 * 12 11 9 31 31 H 1.09007 * 110.48520 * 203.37936 * 17 4 2 32 32 H 1.08996 * 110.48377 * 80.74349 * 17 4 2 33 33 H 1.08993 * 110.03585 * 264.31946 * 18 17 4 34 34 H 1.09005 * 110.02598 * 142.89513 * 18 17 4 35 35 H 1.08997 * 109.47185 * 302.83244 * 21 19 18 36 36 H 1.08997 * 109.47310 * 62.83569 * 21 19 18 37 37 H 1.09001 * 109.47128 * 182.83452 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 1.2212 5 1 1.4627 -1.6608 1.4216 6 7 2.1463 0.0857 2.4047 7 6 2.0760 -0.7043 3.6412 8 6 2.1538 0.2313 4.8493 9 6 2.0824 -0.5790 6.1178 10 1 1.9903 -1.6540 6.0674 11 6 2.1346 0.0516 7.3427 12 7 2.0728 -0.6557 8.4498 13 14 2.2932 1.9109 7.4299 14 1 0.9402 2.5227 7.4512 15 1 3.0263 2.2877 8.6651 16 1 3.0392 2.4003 6.2428 17 6 3.4937 -1.1948 0.7571 18 6 3.3184 -1.5370 -0.7368 19 6 2.0699 -0.7773 -1.2183 20 1 1.3184 -1.4819 -1.5745 21 6 2.4476 0.1967 -2.3360 22 1 -0.3633 -1.0275 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 -0.3633 0.5247 -0.8837 25 1 2.9791 0.6550 2.3861 26 1 1.1358 -1.2550 3.6677 27 1 2.9093 -1.4064 3.6716 28 1 3.0943 0.7818 4.8226 29 1 1.3209 0.9337 4.8191 30 1 2.1099 -0.2119 9.3115 31 1 3.8368 -2.0687 1.3110 32 1 4.1914 -0.3664 0.8795 33 1 3.1729 -2.6102 -0.8595 34 1 4.1935 -1.2117 -1.2995 35 1 3.2171 0.8804 -1.9776 36 1 2.8275 -0.3617 -3.1915 37 1 1.5672 0.7654 -2.6353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083042932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = -35.318197 kcal Electronic energy + Delta-G solvation = -14196.284566 eV Core-core repulsion = 11971.866039 eV Total energy + Delta-G solvation = -2224.418527 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.08987 -35.21889 -32.77797 -31.18134 -30.81120 -28.75870 -25.26426 -23.86463 -23.22500 -20.65797 -20.05891 -19.31942 -16.76529 -15.46344 -15.19490 -14.53762 -14.17879 -13.97162 -13.51365 -13.27087 -12.81922 -12.61364 -12.47885 -12.36503 -11.79322 -11.67045 -11.33729 -11.09082 -10.82386 -10.72573 -10.53037 -10.45366 -10.32908 -10.07737 -9.76867 -9.57534 -9.19972 -8.51364 -7.79935 -6.02301 -4.00430 3.34602 3.41184 3.46266 4.45467 4.48309 4.66409 4.68394 5.04217 5.28124 5.29667 5.32418 5.38630 5.48583 5.55517 5.66598 5.71458 5.76139 5.86410 5.94476 6.02468 6.08833 6.18212 6.20340 6.27748 6.30873 6.39567 6.44970 6.56038 6.81853 7.20321 7.42956 7.67696 7.81054 7.97266 8.55847 9.01954 9.60346 11.11128 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053221 B = 0.005845 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.986345 B = 4788.984360 C = 4918.321465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 H 0.076 0.924 4 C 0.088 3.912 5 H 0.080 0.920 6 N -0.686 5.686 7 C 0.074 3.926 8 C -0.010 4.010 9 C -0.520 4.520 10 H 0.070 0.930 11 C 0.067 3.933 12 N -0.905 5.905 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.289 1.289 16 H -0.265 1.265 17 C -0.155 4.155 18 C -0.116 4.116 19 C -0.096 4.096 20 H 0.069 0.931 21 C -0.142 4.142 22 H 0.048 0.952 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.335 0.665 26 H 0.063 0.937 27 H 0.021 0.979 28 H 0.012 0.988 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.050 0.950 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.913 1.142 -19.668 19.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.099 4.099 3 H 0.094 0.906 4 C -0.023 4.023 5 H 0.098 0.902 6 N -0.315 5.315 7 C -0.054 4.054 8 C -0.048 4.048 9 C -0.559 4.559 10 H 0.088 0.912 11 C -0.134 4.134 12 N -0.544 5.544 13 Si 0.710 3.290 14 H -0.202 1.202 15 H -0.215 1.215 16 H -0.190 1.190 17 C -0.194 4.194 18 C -0.155 4.155 19 C -0.115 4.115 20 H 0.088 0.912 21 C -0.199 4.199 22 H 0.067 0.933 23 H 0.082 0.918 24 H 0.065 0.935 25 H 0.153 0.847 26 H 0.081 0.919 27 H 0.039 0.961 28 H 0.031 0.969 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.230 1.301 -19.454 19.498 hybrid contribution 1.019 0.456 0.250 1.144 sum 1.249 1.757 -19.203 19.324 Atomic orbital electron populations 1.21715 0.94987 1.01230 1.01555 1.21987 0.95646 0.99292 0.93009 0.90601 1.22619 0.94336 0.95007 0.90380 0.90190 1.60578 1.44927 1.24248 1.01748 1.21960 0.99573 0.95532 0.88312 1.19549 0.96565 0.95683 0.93016 1.21084 1.50453 0.95311 0.89040 0.91161 1.25009 0.94529 0.98284 0.95619 1.69923 1.51156 1.35746 0.97577 0.86730 0.78618 0.86164 0.77461 1.20245 1.21529 1.19009 1.23076 0.98859 1.01438 0.96037 1.22127 0.97641 0.99731 0.95965 1.21826 0.97111 0.97075 0.95461 0.91217 1.21860 1.01164 0.99042 0.97852 0.93284 0.91752 0.93535 0.84724 0.91898 0.96098 0.96939 0.96148 0.92759 0.91861 0.91662 0.92180 0.92073 0.92732 0.93132 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.13 37.16 0.34 -1.31 16 2 C -0.08 -0.98 2.67 -88.96 -0.24 -1.21 16 3 H 0.08 0.97 7.85 -51.93 -0.41 0.56 16 4 C 0.09 1.24 2.65 -65.72 -0.17 1.06 16 5 H 0.08 1.20 7.75 -51.93 -0.40 0.80 16 6 N -0.69 -11.68 6.39 -104.63 -0.67 -12.35 16 7 C 0.07 1.53 5.49 -3.83 -0.02 1.51 16 8 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 9 C -0.52 -15.13 9.66 -34.45 -0.33 -15.46 16 10 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 12 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 13 Si 0.88 22.20 27.47 -169.99 -4.67 17.53 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 16 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 17 C -0.15 -1.95 6.41 -25.07 -0.16 -2.11 16 18 C -0.12 -1.23 6.46 -25.61 -0.17 -1.40 16 19 C -0.10 -0.99 3.07 -89.50 -0.27 -1.27 16 20 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 21 C -0.14 -1.29 8.84 37.15 0.33 -0.96 16 22 H 0.05 0.56 8.12 -51.93 -0.42 0.14 16 23 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 25 H 0.33 5.47 8.21 -39.29 -0.32 5.15 16 26 H 0.06 1.32 8.08 -51.93 -0.42 0.91 16 27 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 28 H 0.01 0.30 7.20 -51.92 -0.37 -0.07 16 29 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 30 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 31 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.06 0.82 7.77 -51.93 -0.40 0.41 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.60 7.67 -51.93 -0.40 0.20 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 292.19 15.07 4.40 4.40 Total: -1.00 -30.06 292.19 -7.99 -38.06 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.92 Total: -0.47 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -0.92 Total: -19.64 kcal Atomic # 7 Polarization: -39.99 SS G_CDS: 0.11 Total: -39.88 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.67 Total: 17.53 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.06 -7.99 -38.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.737 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds