Wall clock time and date at job start Mon Mar 30 2020 02:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.43771 * 2 1 4 4 C 1.54892 * 110.59807 * 122.61775 * 2 1 3 5 5 H 1.09000 * 110.75339 * 38.36092 * 4 2 1 6 6 N 1.46895 * 110.75897 * 274.99067 * 4 2 1 7 7 C 1.46896 * 111.00232 * 154.99683 * 6 4 2 8 8 C 1.52997 * 109.47345 * 179.97438 * 7 6 4 9 9 C 1.50694 * 109.47547 * 180.02562 * 8 7 6 10 10 H 1.08009 * 119.99808 * 359.97438 * 9 8 7 11 11 C 1.37870 * 120.00549 * 179.97438 * 9 8 7 12 12 N 1.31524 * 120.00433 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99913 * 0.02562 * 11 9 8 14 14 H 1.48499 * 109.47433 * 89.99775 * 13 11 9 15 15 H 1.48505 * 109.47195 * 210.00199 * 13 11 9 16 16 H 1.48507 * 109.47107 * 329.99585 * 13 11 9 17 17 C 1.54888 * 102.74611 * 156.67207 * 4 2 1 18 18 C 1.54265 * 104.19721 * 322.05788 * 17 4 2 19 19 C 1.53873 * 106.59997 * 23.61451 * 18 17 4 20 20 H 1.09002 * 110.03017 * 240.71676 * 19 18 17 21 21 C 1.52995 * 110.03536 * 119.28129 * 19 18 17 22 22 H 1.08992 * 109.47134 * 179.29834 * 1 2 3 23 23 H 1.08998 * 109.47101 * 299.30158 * 1 2 3 24 24 H 1.09002 * 109.46834 * 59.29823 * 1 2 3 25 25 H 1.00904 * 110.99732 * 278.95497 * 6 4 2 26 26 H 1.08998 * 109.47530 * 300.00079 * 7 6 4 27 27 H 1.09007 * 109.46797 * 59.99900 * 7 6 4 28 28 H 1.09011 * 109.47151 * 300.00326 * 8 7 6 29 29 H 1.08995 * 109.47202 * 59.99866 * 8 7 6 30 30 H 0.96999 * 119.99692 * 179.97438 * 12 11 9 31 31 H 1.09007 * 110.48520 * 203.37936 * 17 4 2 32 32 H 1.08996 * 110.48377 * 80.74349 * 17 4 2 33 33 H 1.08993 * 110.03585 * 264.31946 * 18 17 4 34 34 H 1.09005 * 110.02598 * 142.89513 * 18 17 4 35 35 H 1.08997 * 109.47185 * 302.83244 * 21 19 18 36 36 H 1.08997 * 109.47310 * 62.83569 * 21 19 18 37 37 H 1.09001 * 109.47128 * 182.83452 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0749 -0.7815 1.2212 5 1 1.4627 -1.6608 1.4216 6 7 2.1463 0.0857 2.4047 7 6 2.0760 -0.7043 3.6412 8 6 2.1538 0.2313 4.8493 9 6 2.0824 -0.5790 6.1178 10 1 1.9903 -1.6540 6.0674 11 6 2.1346 0.0516 7.3427 12 7 2.0728 -0.6557 8.4498 13 14 2.2932 1.9109 7.4299 14 1 0.9402 2.5227 7.4512 15 1 3.0263 2.2877 8.6651 16 1 3.0392 2.4003 6.2428 17 6 3.4937 -1.1948 0.7571 18 6 3.3184 -1.5370 -0.7368 19 6 2.0699 -0.7773 -1.2183 20 1 1.3184 -1.4819 -1.5745 21 6 2.4476 0.1967 -2.3360 22 1 -0.3633 -1.0275 -0.0126 23 1 -0.3633 0.5029 0.8962 24 1 -0.3633 0.5247 -0.8837 25 1 2.9791 0.6550 2.3861 26 1 1.1358 -1.2550 3.6677 27 1 2.9093 -1.4064 3.6716 28 1 3.0943 0.7818 4.8226 29 1 1.3209 0.9337 4.8191 30 1 2.1099 -0.2119 9.3115 31 1 3.8368 -2.0687 1.3110 32 1 4.1914 -0.3664 0.8795 33 1 3.1729 -2.6102 -0.8595 34 1 4.1935 -1.2117 -1.2995 35 1 3.2171 0.8804 -1.9776 36 1 2.8275 -0.3617 -3.1915 37 1 1.5672 0.7654 -2.6353 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083042932.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:29 Heat of formation + Delta-G solvation = -54.043638 kcal Electronic energy + Delta-G solvation = -14197.096562 eV Core-core repulsion = 11971.866039 eV Total energy + Delta-G solvation = -2225.230523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.12042 -36.74241 -34.79278 -32.35030 -32.12491 -30.15661 -26.72797 -24.77833 -24.73814 -22.38609 -21.27289 -20.27124 -18.97072 -16.60535 -16.54223 -16.13352 -15.70379 -15.29772 -14.73513 -14.65008 -14.27404 -13.92376 -13.55380 -13.44965 -13.24296 -12.93156 -12.74342 -12.57782 -12.30818 -11.87800 -11.73338 -11.67565 -11.52323 -11.42425 -11.39759 -11.24591 -11.03591 -10.77743 -9.18861 -8.30837 -6.35606 1.37069 1.38150 1.51010 2.36228 3.04780 3.26194 3.71360 3.74695 3.98493 4.33627 4.37365 4.42373 4.49763 4.56929 4.59408 4.69833 4.72517 4.80880 4.87397 4.95636 5.01015 5.06011 5.17373 5.22992 5.26163 5.32233 5.34926 5.41014 5.49367 5.51899 5.62066 5.66898 6.21115 6.27168 6.57131 6.73531 7.29480 8.85996 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.053221 B = 0.005845 C = 0.005692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.986345 B = 4788.984360 C = 4918.321465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.075 4.075 3 H 0.073 0.927 4 C 0.081 3.919 5 H 0.068 0.932 6 N -0.684 5.684 7 C 0.090 3.910 8 C -0.004 4.004 9 C -0.535 4.535 10 H 0.030 0.970 11 C 0.006 3.994 12 N -0.951 5.951 13 Si 0.956 3.044 14 H -0.267 1.267 15 H -0.283 1.283 16 H -0.247 1.247 17 C -0.153 4.153 18 C -0.112 4.112 19 C -0.091 4.091 20 H 0.075 0.925 21 C -0.139 4.139 22 H 0.050 0.950 23 H 0.043 0.957 24 H 0.064 0.936 25 H 0.341 0.659 26 H 0.051 0.949 27 H 0.014 0.986 28 H 0.019 0.981 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.062 0.938 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.304 2.742 -21.791 22.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.094 4.094 3 H 0.092 0.908 4 C -0.029 4.029 5 H 0.086 0.914 6 N -0.314 5.314 7 C -0.039 4.039 8 C -0.042 4.042 9 C -0.574 4.574 10 H 0.049 0.951 11 C -0.191 4.191 12 N -0.592 5.592 13 Si 0.779 3.221 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.170 1.170 17 C -0.192 4.192 18 C -0.150 4.150 19 C -0.110 4.110 20 H 0.094 0.906 21 C -0.197 4.197 22 H 0.069 0.931 23 H 0.062 0.938 24 H 0.083 0.917 25 H 0.160 0.840 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.038 0.962 29 H 0.039 0.961 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.624 2.894 -21.609 21.811 hybrid contribution 0.878 -0.146 0.912 1.274 sum 1.501 2.747 -20.696 20.932 Atomic orbital electron populations 1.21696 0.94861 1.01359 1.01398 1.21952 0.95726 0.99053 0.92706 0.90847 1.22722 0.95572 0.94651 0.89946 0.91369 1.60509 1.45395 1.24322 1.01192 1.21606 0.98736 0.94759 0.88842 1.19433 0.96654 0.95660 0.92409 1.21417 1.50336 0.94124 0.91480 0.95149 1.26009 0.93981 1.04127 0.95003 1.70072 1.52432 1.38267 0.98424 0.85582 0.79231 0.79051 0.78272 1.19256 1.20839 1.17048 1.23027 0.97581 1.01078 0.97526 1.22118 0.98349 1.00218 0.94328 1.21794 0.96992 0.97213 0.94981 0.90634 1.21838 1.01399 0.98797 0.97618 0.93100 0.93776 0.91741 0.84043 0.93039 0.96788 0.96243 0.96092 0.92405 0.92872 0.91417 0.91632 0.90759 0.92859 0.91874 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 9.13 71.98 0.66 -2.37 16 2 C -0.08 -1.69 2.67 -9.72 -0.03 -1.72 16 3 H 0.07 1.71 7.85 -2.39 -0.02 1.69 16 4 C 0.08 2.22 2.65 46.21 0.12 2.34 16 5 H 0.07 2.03 7.75 -2.39 -0.02 2.01 16 6 N -0.68 -22.69 6.39 -484.94 -3.10 -25.79 16 7 C 0.09 3.70 5.49 86.30 0.47 4.17 16 8 C 0.00 -0.18 4.30 29.85 0.13 -0.05 16 9 C -0.54 -31.81 9.66 25.60 0.25 -31.56 16 10 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 11 C 0.01 0.34 5.47 84.65 0.46 0.80 16 12 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 13 Si 0.96 45.33 27.47 68.60 1.88 47.21 16 14 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 15 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 17 C -0.15 -3.63 6.41 31.67 0.20 -3.43 16 18 C -0.11 -2.09 6.46 31.32 0.20 -1.89 16 19 C -0.09 -1.64 3.07 -10.07 -0.03 -1.67 16 20 H 0.08 1.31 7.82 -2.39 -0.02 1.29 16 21 C -0.14 -2.08 8.84 71.98 0.64 -1.44 16 22 H 0.05 1.10 8.12 -2.39 -0.02 1.08 16 23 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.34 10.62 8.21 -89.69 -0.74 9.88 16 26 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 27 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.02 0.91 7.20 -2.38 -0.02 0.90 16 29 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 30 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 31 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.07 1.57 7.77 -2.39 -0.02 1.56 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.07 1.22 7.67 -2.38 -0.02 1.20 16 35 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -64.79 292.19 2.38 -62.41 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.21 Total: 13.42 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.08 Total: -36.82 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -2.80 Total: -86.23 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.88 Total: 47.21 kcal Total: -64.79 2.38 -62.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083042932.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.369 kcal (2) G-P(sol) polarization free energy of solvation -64.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds