Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62415 * 2 1 4 4 C 1.54241 * 109.62763 * 239.61757 * 2 1 3 5 5 C 1.45539 * 112.40874 * 160.30102 * 4 2 1 6 6 C 1.54244 * 112.40705 * 61.93497 * 5 4 2 7 7 C 1.50472 * 108.51608 * 280.01310 * 6 5 4 8 8 H 1.09003 * 108.87718 * 333.37445 * 7 6 5 9 9 N 1.46901 * 108.79804 * 214.87455 * 7 6 5 10 10 C 1.46899 * 111.00057 * 82.07393 * 9 7 6 11 11 C 1.50700 * 109.47232 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99991 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99877 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99796 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00132 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47308 * 89.99701 * 15 13 11 17 17 H 1.48504 * 109.47014 * 209.99447 * 15 13 11 18 18 H 1.48500 * 109.47429 * 329.99576 * 15 13 11 19 19 C 1.54066 * 112.49782 * 94.15109 * 7 6 5 20 20 C 1.50474 * 109.63213 * 120.58399 * 2 1 3 21 21 H 1.08997 * 109.46960 * 180.38928 * 1 2 3 22 22 H 1.08998 * 109.47026 * 300.38366 * 1 2 3 23 23 H 1.09005 * 109.47271 * 60.38173 * 1 2 3 24 24 H 1.09003 * 108.89715 * 39.54604 * 4 2 1 25 25 H 1.09002 * 108.89119 * 281.05265 * 4 2 1 26 26 H 1.09005 * 108.89585 * 301.18464 * 5 4 2 27 27 H 1.09001 * 108.89696 * 182.68971 * 5 4 2 28 28 H 1.09000 * 109.62948 * 160.30914 * 6 5 4 29 29 H 1.08998 * 109.78833 * 39.81465 * 6 5 4 30 30 H 1.00898 * 110.99971 * 318.12065 * 9 7 6 31 31 H 1.08994 * 109.46945 * 300.00145 * 10 9 7 32 32 H 1.09002 * 109.47024 * 59.99984 * 10 9 7 33 33 H 0.97001 * 120.00164 * 179.97438 * 14 13 11 34 34 H 1.09001 * 108.81117 * 79.14101 * 19 7 6 35 35 H 1.09002 * 108.81336 * 197.41990 * 19 7 6 36 36 H 1.09001 * 108.87514 * 93.07904 * 20 2 1 37 37 H 1.08996 * 108.87673 * 334.63621 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7348 -1.2533 5 6 3.4276 -0.3926 -1.5664 6 6 4.4029 -0.7936 -0.4407 7 6 4.3395 0.2507 0.6408 8 1 4.0349 1.1990 0.1981 9 7 5.6778 0.4081 1.2258 10 6 6.5105 1.2964 0.4038 11 6 7.8724 1.4339 1.0342 12 1 8.0970 0.9132 1.9533 13 6 8.8318 2.2237 0.4371 14 7 10.0205 2.3433 0.9870 15 14 8.4435 3.1238 -1.1530 16 1 7.8895 4.4656 -0.8397 17 1 9.6859 3.2755 -1.9521 18 1 7.4462 2.3460 -1.9313 19 6 3.3469 -0.1188 1.7597 20 6 2.0356 -0.7211 1.2201 21 1 -0.3633 -1.0276 0.0070 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5079 -0.8934 24 1 1.4177 -0.4716 -2.1027 25 1 1.9804 -1.8097 -1.0854 26 1 3.4968 0.6834 -1.7267 27 1 3.7185 -0.9038 -2.4841 28 1 5.4167 -0.8491 -0.8371 29 1 4.1160 -1.7623 -0.0316 30 1 6.1235 -0.4878 1.3553 31 1 6.6135 0.8753 -0.5962 32 1 6.0401 2.2775 0.3383 33 1 10.6957 2.8987 0.5667 34 1 3.8192 -0.8428 2.4236 35 1 3.1121 0.7788 2.3319 36 1 2.2062 -1.7673 0.9660 37 1 1.2763 -0.6691 2.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083427240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -27.644079 kcal Electronic energy + Delta-G solvation = -14585.456911 eV Core-core repulsion = 12361.371159 eV Total energy + Delta-G solvation = -2224.085752 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.24878 -35.51793 -32.77532 -32.43496 -30.82029 -27.64341 -26.09456 -23.92293 -22.61933 -21.11340 -20.33176 -18.88769 -16.73430 -15.23105 -15.12196 -14.75019 -14.43834 -14.02388 -13.65273 -13.15297 -12.85563 -12.65188 -12.58935 -12.21161 -11.86629 -11.71277 -11.24133 -11.06348 -10.83474 -10.55782 -10.44182 -10.33302 -10.21081 -10.11822 -9.89729 -9.68502 -9.24748 -8.56632 -7.35725 -6.03766 -4.01166 3.29981 3.36919 3.39695 4.43860 4.64645 4.72413 4.91444 5.09384 5.25933 5.29250 5.34153 5.39562 5.53342 5.55354 5.64218 5.76181 5.78751 5.93840 5.94910 6.12491 6.16461 6.21864 6.28998 6.31944 6.35957 6.48015 6.52486 6.65793 6.71440 6.87347 7.10351 7.65769 7.97635 8.42077 8.69656 9.04840 9.58741 11.09697 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047527 B = 0.007159 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.994744 B = 3910.250375 C = 4182.111770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.093 4.093 3 H 0.073 0.927 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.146 4.146 7 C 0.086 3.914 8 H 0.066 0.934 9 N -0.681 5.681 10 C 0.165 3.835 11 C -0.515 4.515 12 H 0.078 0.922 13 C 0.068 3.932 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.267 1.267 19 C -0.103 4.103 20 C -0.111 4.111 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.054 0.946 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.334 0.666 31 H -0.015 1.015 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.341 -6.087 -4.109 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.155 4.155 6 C -0.185 4.185 7 C -0.025 4.025 8 H 0.084 0.916 9 N -0.310 5.310 10 C 0.037 3.963 11 C -0.553 4.553 12 H 0.096 0.904 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.192 1.192 19 C -0.141 4.141 20 C -0.149 4.149 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.152 0.848 31 H 0.002 0.998 32 H 0.037 0.963 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.337 -5.481 -3.692 18.554 hybrid contribution 0.189 0.009 -1.647 1.658 sum -17.148 -5.472 -5.339 18.775 Atomic orbital electron populations 1.21885 0.95593 1.01350 1.01339 1.20938 0.94820 1.00345 0.95049 0.90830 1.20522 0.96451 1.00106 0.97443 1.20431 0.95122 1.01542 0.98409 1.22170 0.99480 1.00063 0.96801 1.21367 0.91309 0.97363 0.92471 0.91593 1.60542 1.01961 1.17492 1.51032 1.19991 0.93161 0.91902 0.91222 1.21097 0.94366 1.29377 1.10463 0.90358 1.24906 0.94890 0.96305 0.97255 1.69904 1.04292 1.39994 1.39887 0.86836 0.77910 0.80641 0.84226 1.20191 1.21242 1.19217 1.21846 0.93647 1.00814 0.97778 1.21412 0.97021 0.99588 0.96925 0.92988 0.92812 0.93040 0.92764 0.92485 0.92289 0.92774 0.91588 0.91931 0.84807 0.99785 0.96273 0.92699 0.92062 0.92207 0.92498 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.87 37.16 0.33 -1.02 16 2 C -0.09 -1.04 2.39 -91.23 -0.22 -1.26 16 3 H 0.07 0.92 7.00 -51.93 -0.36 0.56 16 4 C -0.11 -1.21 4.69 -29.60 -0.14 -1.35 16 5 C -0.12 -1.54 5.26 -29.60 -0.16 -1.70 16 6 C -0.15 -2.21 4.92 -27.34 -0.13 -2.34 16 7 C 0.09 1.44 1.99 -68.42 -0.14 1.31 16 8 H 0.07 1.18 6.28 -51.93 -0.33 0.85 16 9 N -0.68 -14.31 6.11 -108.74 -0.66 -14.98 16 10 C 0.17 4.08 4.21 -4.98 -0.02 4.06 16 11 C -0.51 -15.00 9.87 -34.44 -0.34 -15.34 16 12 H 0.08 2.47 8.06 -52.49 -0.42 2.05 16 13 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 14 N -0.90 -28.11 13.96 55.43 0.77 -27.33 16 15 Si 0.88 21.95 27.47 -169.99 -4.67 17.28 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 18 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 19 C -0.10 -1.48 5.46 -25.62 -0.14 -1.62 16 20 C -0.11 -1.30 4.89 -27.44 -0.13 -1.43 16 21 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 23 H 0.05 0.45 8.13 -51.93 -0.42 0.03 16 24 H 0.05 0.56 7.97 -51.93 -0.41 0.14 16 25 H 0.06 0.61 7.47 -51.93 -0.39 0.22 16 26 H 0.06 0.83 7.47 -51.93 -0.39 0.45 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.07 1.13 6.95 -51.93 -0.36 0.77 16 29 H 0.06 0.86 7.00 -51.93 -0.36 0.50 16 30 H 0.33 6.85 8.47 -39.29 -0.33 6.52 16 31 H -0.02 -0.38 6.27 -51.93 -0.33 -0.71 16 32 H 0.02 0.49 7.47 -51.93 -0.39 0.10 16 33 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 34 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.65 6.64 -51.93 -0.34 0.30 16 37 H 0.06 0.60 7.68 -51.93 -0.40 0.21 16 LS Contribution 278.14 15.07 4.19 4.19 Total: -1.00 -30.13 278.14 -8.07 -38.20 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -6.52 Total: 1.43 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: -1.19 Total: -18.79 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: 0.11 Total: -42.31 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -30.13 -8.07 -38.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083427240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.556 kcal (2) G-P(sol) polarization free energy of solvation -30.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds