Wall clock time and date at job start Mon Mar 30 2020 02:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.62415 * 2 1 4 4 C 1.54241 * 109.62763 * 239.61757 * 2 1 3 5 5 C 1.45539 * 112.40874 * 160.30102 * 4 2 1 6 6 C 1.54244 * 112.40705 * 61.93497 * 5 4 2 7 7 C 1.50472 * 108.51608 * 280.01310 * 6 5 4 8 8 H 1.09003 * 108.87718 * 333.37445 * 7 6 5 9 9 N 1.46901 * 108.79804 * 214.87455 * 7 6 5 10 10 C 1.46899 * 111.00057 * 82.07393 * 9 7 6 11 11 C 1.50700 * 109.47232 * 179.97438 * 10 9 7 12 12 H 1.07998 * 119.99991 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99877 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99796 * 180.02562 * 13 11 10 15 15 Si 1.86796 * 120.00132 * 0.02562 * 13 11 10 16 16 H 1.48503 * 109.47308 * 89.99701 * 15 13 11 17 17 H 1.48504 * 109.47014 * 209.99447 * 15 13 11 18 18 H 1.48500 * 109.47429 * 329.99576 * 15 13 11 19 19 C 1.54066 * 112.49782 * 94.15109 * 7 6 5 20 20 C 1.50474 * 109.63213 * 120.58399 * 2 1 3 21 21 H 1.08997 * 109.46960 * 180.38928 * 1 2 3 22 22 H 1.08998 * 109.47026 * 300.38366 * 1 2 3 23 23 H 1.09005 * 109.47271 * 60.38173 * 1 2 3 24 24 H 1.09003 * 108.89715 * 39.54604 * 4 2 1 25 25 H 1.09002 * 108.89119 * 281.05265 * 4 2 1 26 26 H 1.09005 * 108.89585 * 301.18464 * 5 4 2 27 27 H 1.09001 * 108.89696 * 182.68971 * 5 4 2 28 28 H 1.09000 * 109.62948 * 160.30914 * 6 5 4 29 29 H 1.08998 * 109.78833 * 39.81465 * 6 5 4 30 30 H 1.00898 * 110.99971 * 318.12065 * 9 7 6 31 31 H 1.08994 * 109.46945 * 300.00145 * 10 9 7 32 32 H 1.09002 * 109.47024 * 59.99984 * 10 9 7 33 33 H 0.97001 * 120.00164 * 179.97438 * 14 13 11 34 34 H 1.09001 * 108.81117 * 79.14101 * 19 7 6 35 35 H 1.09002 * 108.81336 * 197.41990 * 19 7 6 36 36 H 1.09001 * 108.87514 * 93.07904 * 20 2 1 37 37 H 1.08996 * 108.87673 * 334.63621 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0481 -0.7348 -1.2533 5 6 3.4276 -0.3926 -1.5664 6 6 4.4029 -0.7936 -0.4407 7 6 4.3395 0.2507 0.6408 8 1 4.0349 1.1990 0.1981 9 7 5.6778 0.4081 1.2258 10 6 6.5105 1.2964 0.4038 11 6 7.8724 1.4339 1.0342 12 1 8.0970 0.9132 1.9533 13 6 8.8318 2.2237 0.4371 14 7 10.0205 2.3433 0.9870 15 14 8.4435 3.1238 -1.1530 16 1 7.8895 4.4656 -0.8397 17 1 9.6859 3.2755 -1.9521 18 1 7.4462 2.3460 -1.9313 19 6 3.3469 -0.1188 1.7597 20 6 2.0356 -0.7211 1.2201 21 1 -0.3633 -1.0276 0.0070 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5079 -0.8934 24 1 1.4177 -0.4716 -2.1027 25 1 1.9804 -1.8097 -1.0854 26 1 3.4968 0.6834 -1.7267 27 1 3.7185 -0.9038 -2.4841 28 1 5.4167 -0.8491 -0.8371 29 1 4.1160 -1.7623 -0.0316 30 1 6.1235 -0.4878 1.3553 31 1 6.6135 0.8753 -0.5962 32 1 6.0401 2.2775 0.3383 33 1 10.6957 2.8987 0.5667 34 1 3.8192 -0.8428 2.4236 35 1 3.1121 0.7788 2.3319 36 1 2.2062 -1.7673 0.9660 37 1 1.2763 -0.6691 2.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083427240.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:00 Heat of formation + Delta-G solvation = -46.985074 kcal Electronic energy + Delta-G solvation = -14586.295600 eV Core-core repulsion = 12361.371159 eV Total energy + Delta-G solvation = -2224.924440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.38225 -36.98495 -34.76036 -33.55445 -32.36002 -29.16087 -27.47497 -25.17329 -23.75507 -23.00222 -21.42961 -20.08565 -18.85726 -16.77383 -16.34292 -16.23830 -15.70890 -15.33939 -15.09474 -14.66918 -14.27225 -14.02592 -13.72726 -13.54504 -13.28946 -12.93748 -12.72630 -12.61168 -12.20650 -11.92988 -11.87259 -11.62327 -11.50384 -11.34699 -11.23798 -11.06450 -10.97723 -10.82444 -9.05410 -8.32347 -6.36557 1.32077 1.33351 1.44738 2.31624 3.01594 3.44308 3.66517 3.87494 4.07374 4.20420 4.24632 4.28224 4.45399 4.54177 4.65255 4.73164 4.78784 4.87771 4.91075 5.03539 5.07336 5.09559 5.17750 5.19508 5.24453 5.34214 5.43791 5.45042 5.50960 5.52380 5.55838 5.67026 5.99547 6.57908 6.67003 6.79220 7.28704 8.84570 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.047527 B = 0.007159 C = 0.006694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.994744 B = 3910.250375 C = 4182.111770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 H 0.056 0.944 4 C -0.106 4.106 5 C -0.112 4.112 6 C -0.141 4.141 7 C 0.087 3.913 8 H 0.055 0.945 9 N -0.692 5.692 10 C 0.179 3.821 11 C -0.529 4.529 12 H 0.037 0.963 13 C 0.009 3.991 14 N -0.947 5.947 15 Si 0.949 3.051 16 H -0.266 1.266 17 H -0.278 1.278 18 H -0.252 1.252 19 C -0.098 4.098 20 C -0.104 4.104 21 H 0.062 0.938 22 H 0.056 0.944 23 H 0.057 0.943 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.046 0.954 27 H 0.063 0.937 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.335 0.665 31 H -0.013 1.013 32 H 0.017 0.983 33 H 0.268 0.732 34 H 0.057 0.943 35 H 0.050 0.950 36 H 0.065 0.935 37 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.689 -6.410 -5.677 21.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 H 0.075 0.925 4 C -0.143 4.143 5 C -0.150 4.150 6 C -0.180 4.180 7 C -0.023 4.023 8 H 0.073 0.927 9 N -0.321 5.321 10 C 0.051 3.949 11 C -0.567 4.567 12 H 0.055 0.945 13 C -0.189 4.189 14 N -0.588 5.588 15 Si 0.772 3.228 16 H -0.191 1.191 17 H -0.203 1.203 18 H -0.176 1.176 19 C -0.136 4.136 20 C -0.142 4.142 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.096 0.904 30 H 0.153 0.847 31 H 0.004 0.996 32 H 0.035 0.965 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.712 -5.819 -5.252 21.214 hybrid contribution 0.949 0.070 -1.053 1.419 sum -18.764 -5.750 -6.305 20.613 Atomic orbital electron populations 1.21841 0.93848 1.02208 1.01845 1.20936 0.96280 0.99254 0.94800 0.92519 1.20502 0.95157 1.00716 0.97965 1.20408 0.95922 1.00820 0.97896 1.22069 0.98914 1.00196 0.96863 1.21472 0.89315 0.97688 0.93776 0.92691 1.60476 1.03275 1.17238 1.51140 1.19693 0.91387 0.92604 0.91259 1.21373 0.96853 1.29100 1.09398 0.94514 1.25869 0.94477 0.97181 1.01345 1.70053 1.05581 1.41124 1.41996 0.85682 0.78332 0.79442 0.79298 1.19122 1.20339 1.17567 1.21799 0.94503 1.00544 0.96761 1.21371 0.95520 0.99732 0.97600 0.91911 0.92528 0.92440 0.91326 0.91390 0.93531 0.91848 0.93899 0.90366 0.84743 0.99565 0.96528 0.92308 0.92402 0.93105 0.91603 0.91057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.87 71.98 0.64 -1.53 16 2 C -0.09 -1.86 2.39 -11.19 -0.03 -1.89 16 3 H 0.06 1.32 7.00 -2.38 -0.02 1.31 16 4 C -0.11 -2.05 4.69 28.74 0.13 -1.91 16 5 C -0.11 -2.73 5.26 28.74 0.15 -2.57 16 6 C -0.14 -4.09 4.92 30.20 0.15 -3.94 16 7 C 0.09 2.88 1.99 44.46 0.09 2.97 16 8 H 0.05 1.94 6.28 -2.39 -0.01 1.92 16 9 N -0.69 -29.38 6.11 -497.96 -3.04 -32.43 16 10 C 0.18 8.91 4.21 85.56 0.36 9.27 16 11 C -0.53 -31.69 9.87 25.60 0.25 -31.44 16 12 H 0.04 2.43 8.06 -2.91 -0.02 2.41 16 13 C 0.01 0.53 5.47 84.65 0.46 0.99 16 14 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 15 Si 0.95 45.17 27.47 68.60 1.88 47.06 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 19 C -0.10 -2.70 5.46 31.31 0.17 -2.53 16 20 C -0.10 -2.16 4.89 30.14 0.15 -2.01 16 21 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 22 H 0.06 0.84 8.11 -2.39 -0.02 0.83 16 23 H 0.06 0.83 8.13 -2.38 -0.02 0.81 16 24 H 0.07 1.16 7.97 -2.39 -0.02 1.14 16 25 H 0.07 1.20 7.47 -2.39 -0.02 1.18 16 26 H 0.05 1.24 7.47 -2.38 -0.02 1.22 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.44 6.95 -2.39 -0.02 1.42 16 29 H 0.08 2.00 7.00 -2.39 -0.02 1.98 16 30 H 0.34 14.02 8.47 -89.70 -0.76 13.26 16 31 H -0.01 -0.65 6.27 -2.39 -0.01 -0.66 16 32 H 0.02 0.84 7.47 -2.39 -0.02 0.82 16 33 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 34 H 0.06 1.63 8.12 -2.39 -0.02 1.61 16 35 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.27 6.64 -2.39 -0.02 1.25 16 37 H 0.07 1.30 7.68 -2.39 -0.02 1.28 16 Total: -1.00 -65.52 278.14 1.88 -63.65 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.21 Total: 16.34 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 2.53 Total: -34.58 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -2.75 Total: -92.47 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 1.88 Total: 47.06 kcal Total: -65.52 1.88 -63.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083427240.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.663 kcal (2) G-P(sol) polarization free energy of solvation -65.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds