Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.62787 * 2 1 4 4 C 1.50471 * 109.78720 * 120.49152 * 2 1 3 5 5 C 1.54070 * 112.49546 * 213.95287 * 4 2 1 6 6 C 1.53821 * 112.88761 * 318.13309 * 5 4 2 7 7 C 1.50467 * 112.63856 * 318.57022 * 6 5 4 8 8 H 1.09000 * 109.63114 * 334.08711 * 7 6 5 9 9 N 1.46906 * 109.63053 * 213.69817 * 7 6 5 10 10 C 1.46904 * 110.99820 * 85.38984 * 9 7 6 11 11 C 1.50695 * 109.46907 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00538 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99661 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.54242 * 108.68415 * 93.89359 * 7 6 5 20 20 C 1.45540 * 112.40857 * 280.11116 * 19 7 6 21 21 H 1.09007 * 109.47152 * 180.38349 * 1 2 3 22 22 H 1.09001 * 109.47114 * 300.38211 * 1 2 3 23 23 H 1.08997 * 109.47388 * 60.38503 * 1 2 3 24 24 H 1.08996 * 108.87894 * 334.72675 * 4 2 1 25 25 H 1.08994 * 108.88105 * 93.17870 * 4 2 1 26 26 H 1.09005 * 108.81484 * 79.14114 * 5 4 2 27 27 H 1.08997 * 108.81511 * 197.53042 * 5 4 2 28 28 H 1.08998 * 108.93301 * 197.66735 * 6 5 4 29 29 H 1.09000 * 108.67728 * 79.30152 * 6 5 4 30 30 H 1.00901 * 110.99794 * 321.43769 * 9 7 6 31 31 H 1.09002 * 109.47117 * 59.99885 * 10 9 7 32 32 H 1.09000 * 109.46655 * 300.00218 * 10 9 7 33 33 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 34 34 H 1.09005 * 108.89137 * 40.85949 * 19 7 6 35 35 H 1.09001 * 108.89771 * 159.44883 * 19 7 6 36 36 H 1.08995 * 108.89537 * 182.68821 * 20 19 7 37 37 H 1.09005 * 108.89383 * 301.18010 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0394 -0.7184 1.2201 5 6 3.3500 -0.1120 1.7570 6 6 4.3410 0.2556 0.6395 7 6 4.4042 -0.7862 -0.4443 8 1 4.1194 -1.7563 -0.0369 9 7 5.7700 -0.8581 -0.9808 10 6 6.6068 -1.7544 -0.1718 11 6 7.9972 -1.8020 -0.7508 12 1 8.2354 -1.2247 -1.6319 13 6 8.9654 -2.5828 -0.1557 14 7 8.6756 -3.2855 0.9176 15 14 10.6888 -2.6425 -0.8738 16 1 11.5198 -1.5781 -0.2559 17 1 10.6212 -2.4280 -2.3417 18 1 11.2957 -3.9688 -0.5949 19 6 3.4262 -0.3893 -1.5690 20 6 2.0480 -0.7348 -1.2533 21 1 -0.3634 -1.0277 0.0069 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5078 -0.8934 24 1 1.2812 -0.6676 2.0015 25 1 2.2126 -1.7643 0.9669 26 1 3.1137 0.7856 2.3286 27 1 3.8262 -0.8347 2.4195 28 1 5.3342 0.3746 1.0726 29 1 4.0344 1.2044 0.1991 30 1 6.1818 0.0608 -1.0455 31 1 6.1764 -2.7558 -0.1762 32 1 6.6524 -1.3830 0.8520 33 1 7.7807 -3.2542 1.2907 34 1 3.4921 0.6867 -1.7306 35 1 3.7160 -0.9020 -2.4862 36 1 1.4156 -0.4743 -2.1019 37 1 1.9835 -1.8097 -1.0842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083427241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = -36.467016 kcal Electronic energy + Delta-G solvation = -14548.469767 eV Core-core repulsion = 12324.001424 eV Total energy + Delta-G solvation = -2224.468343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.20981 -35.44424 -33.03745 -32.31885 -30.77016 -27.26622 -25.56300 -23.55269 -22.81697 -21.65200 -20.18526 -19.03164 -16.80185 -15.25303 -14.94712 -14.54637 -14.26419 -13.84912 -13.67812 -13.23317 -13.08537 -12.79492 -12.35245 -11.88594 -11.77376 -11.51940 -11.31905 -10.84041 -10.67903 -10.57196 -10.48807 -10.39285 -10.18720 -10.08009 -10.01640 -9.77579 -8.58843 -8.38528 -7.32322 -6.35245 -4.03707 3.45391 3.50091 3.66054 4.54742 4.69545 4.76489 4.94197 5.16223 5.26424 5.33121 5.41376 5.43496 5.50090 5.60818 5.67540 5.72274 5.80953 5.93980 5.98784 6.09055 6.22916 6.26840 6.33242 6.39505 6.43840 6.48540 6.58212 6.68671 6.71192 7.02609 7.22851 7.86231 8.21192 8.53788 8.62353 8.90495 9.68231 11.04625 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062779 B = 0.006227 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.900645 B = 4495.596829 C = 4699.967910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.145 4.145 7 C 0.089 3.911 8 H 0.070 0.930 9 N -0.680 5.680 10 C 0.185 3.815 11 C -0.595 4.595 12 H 0.055 0.945 13 C 0.014 3.986 14 N -0.915 5.915 15 Si 1.076 2.924 16 H -0.289 1.289 17 H -0.288 1.288 18 H -0.285 1.285 19 C -0.108 4.108 20 C -0.108 4.108 21 H 0.052 0.948 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.330 0.670 31 H 0.016 0.984 32 H -0.024 1.024 33 H 0.267 0.733 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.009 6.925 -0.809 15.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.088 0.912 4 C -0.151 4.151 5 C -0.151 4.151 6 C -0.184 4.184 7 C -0.022 4.022 8 H 0.088 0.912 9 N -0.309 5.309 10 C 0.058 3.942 11 C -0.633 4.633 12 H 0.074 0.926 13 C -0.190 4.190 14 N -0.552 5.552 15 Si 0.904 3.096 16 H -0.216 1.216 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.146 4.146 20 C -0.146 4.146 21 H 0.071 0.929 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.146 0.854 31 H 0.034 0.966 32 H -0.007 1.007 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.645 5.742 -1.085 13.930 hybrid contribution -1.390 1.242 0.708 1.994 sum -14.035 6.984 -0.377 15.681 Atomic orbital electron populations 1.21884 0.95607 1.01504 1.01184 1.20921 0.94748 1.00047 0.95227 0.91151 1.21402 0.96485 1.00121 0.97049 1.21794 0.95173 1.00264 0.97831 1.22115 0.99188 0.99905 0.97216 1.21259 0.91029 0.97732 0.92152 0.91208 1.60660 1.01044 1.15244 1.53937 1.19650 0.92631 0.91433 0.90477 1.22056 0.95312 1.31172 1.14803 0.92621 1.25866 1.04699 0.93108 0.95312 1.70765 1.23493 1.39818 1.21096 0.83449 0.74424 0.76491 0.75226 1.21556 1.21390 1.21031 1.20460 0.93836 1.00788 0.99565 1.20525 0.96706 1.00291 0.97064 0.92854 0.93033 0.92939 0.92620 0.92084 0.92851 0.92456 0.92152 0.92598 0.85354 0.96606 1.00663 0.92296 0.93029 0.91327 0.92606 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 8.88 37.16 0.33 -1.07 16 2 C -0.09 -1.05 2.39 -91.23 -0.22 -1.27 16 3 H 0.07 0.84 6.99 -51.93 -0.36 0.48 16 4 C -0.11 -1.41 4.89 -27.44 -0.13 -1.54 16 5 C -0.11 -1.58 5.84 -25.75 -0.15 -1.73 16 6 C -0.15 -2.33 4.70 -27.57 -0.13 -2.46 16 7 C 0.09 1.60 2.13 -68.32 -0.15 1.45 16 8 H 0.07 1.35 6.66 -51.93 -0.35 1.01 16 9 N -0.68 -15.03 6.16 -108.64 -0.67 -15.70 16 10 C 0.19 4.94 4.48 -4.98 -0.02 4.92 16 11 C -0.59 -17.41 9.32 -34.44 -0.32 -17.73 16 12 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 13 C 0.01 0.40 5.46 -17.82 -0.10 0.30 16 14 N -0.92 -28.50 13.65 55.43 0.76 -27.74 16 15 Si 1.08 25.83 29.90 -169.99 -5.08 20.74 16 16 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 19 C -0.11 -1.64 4.90 -29.60 -0.15 -1.78 16 20 C -0.11 -1.37 4.69 -29.60 -0.14 -1.51 16 21 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 22 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 23 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 24 H 0.06 0.62 7.69 -51.93 -0.40 0.22 16 25 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.10 7.19 -51.93 -0.37 0.73 16 29 H 0.06 0.82 6.66 -51.93 -0.35 0.47 16 30 H 0.33 7.07 8.43 -39.29 -0.33 6.74 16 31 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 32 H -0.02 -0.67 7.36 -51.93 -0.38 -1.05 16 33 H 0.27 8.30 7.22 -40.82 -0.29 8.01 16 34 H 0.05 0.74 7.49 -51.93 -0.39 0.35 16 35 H 0.07 1.12 8.12 -51.93 -0.42 0.70 16 36 H 0.06 0.64 7.96 -51.93 -0.41 0.22 16 37 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 LS Contribution 281.02 15.07 4.23 4.23 Total: -1.00 -30.42 281.02 -8.46 -38.88 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.52 Total: 2.01 kcal Atomic # 6 Polarization: -21.25 SS G_CDS: -1.17 Total: -22.42 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.09 Total: -43.44 kcal Atomic # 14 Polarization: 25.83 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.42 -8.46 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083427241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.411 kcal (2) G-P(sol) polarization free energy of solvation -30.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds