Wall clock time and date at job start Mon Mar 30 2020 02:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.62787 * 2 1 4 4 C 1.50471 * 109.78720 * 120.49152 * 2 1 3 5 5 C 1.54070 * 112.49546 * 213.95287 * 4 2 1 6 6 C 1.53821 * 112.88761 * 318.13309 * 5 4 2 7 7 C 1.50467 * 112.63856 * 318.57022 * 6 5 4 8 8 H 1.09000 * 109.63114 * 334.08711 * 7 6 5 9 9 N 1.46906 * 109.63053 * 213.69817 * 7 6 5 10 10 C 1.46904 * 110.99820 * 85.38984 * 9 7 6 11 11 C 1.50695 * 109.46907 * 180.02562 * 10 9 7 12 12 H 1.07999 * 120.00538 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99661 * 179.97438 * 11 10 9 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00030 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47297 * 89.99863 * 15 13 11 17 17 H 1.48503 * 109.47261 * 330.00044 * 15 13 11 18 18 H 1.48500 * 109.47454 * 210.00037 * 15 13 11 19 19 C 1.54242 * 108.68415 * 93.89359 * 7 6 5 20 20 C 1.45540 * 112.40857 * 280.11116 * 19 7 6 21 21 H 1.09007 * 109.47152 * 180.38349 * 1 2 3 22 22 H 1.09001 * 109.47114 * 300.38211 * 1 2 3 23 23 H 1.08997 * 109.47388 * 60.38503 * 1 2 3 24 24 H 1.08996 * 108.87894 * 334.72675 * 4 2 1 25 25 H 1.08994 * 108.88105 * 93.17870 * 4 2 1 26 26 H 1.09005 * 108.81484 * 79.14114 * 5 4 2 27 27 H 1.08997 * 108.81511 * 197.53042 * 5 4 2 28 28 H 1.08998 * 108.93301 * 197.66735 * 6 5 4 29 29 H 1.09000 * 108.67728 * 79.30152 * 6 5 4 30 30 H 1.00901 * 110.99794 * 321.43769 * 9 7 6 31 31 H 1.09002 * 109.47117 * 59.99885 * 10 9 7 32 32 H 1.09000 * 109.46655 * 300.00218 * 10 9 7 33 33 H 0.97001 * 119.99697 * 359.97438 * 14 13 11 34 34 H 1.09005 * 108.89137 * 40.85949 * 19 7 6 35 35 H 1.09001 * 108.89771 * 159.44883 * 19 7 6 36 36 H 1.08995 * 108.89537 * 182.68821 * 20 19 7 37 37 H 1.09005 * 108.89383 * 301.18010 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0394 -0.7184 1.2201 5 6 3.3500 -0.1120 1.7570 6 6 4.3410 0.2556 0.6395 7 6 4.4042 -0.7862 -0.4443 8 1 4.1194 -1.7563 -0.0369 9 7 5.7700 -0.8581 -0.9808 10 6 6.6068 -1.7544 -0.1718 11 6 7.9972 -1.8020 -0.7508 12 1 8.2354 -1.2247 -1.6319 13 6 8.9654 -2.5828 -0.1557 14 7 8.6756 -3.2855 0.9176 15 14 10.6888 -2.6425 -0.8738 16 1 11.5198 -1.5781 -0.2559 17 1 10.6212 -2.4280 -2.3417 18 1 11.2957 -3.9688 -0.5949 19 6 3.4262 -0.3893 -1.5690 20 6 2.0480 -0.7348 -1.2533 21 1 -0.3634 -1.0277 0.0069 22 1 -0.3633 0.5198 0.8865 23 1 -0.3634 0.5078 -0.8934 24 1 1.2812 -0.6676 2.0015 25 1 2.2126 -1.7643 0.9669 26 1 3.1137 0.7856 2.3286 27 1 3.8262 -0.8347 2.4195 28 1 5.3342 0.3746 1.0726 29 1 4.0344 1.2044 0.1991 30 1 6.1818 0.0608 -1.0455 31 1 6.1764 -2.7558 -0.1762 32 1 6.6524 -1.3830 0.8520 33 1 7.7807 -3.2542 1.2907 34 1 3.4921 0.6867 -1.7306 35 1 3.7160 -0.9020 -2.4862 36 1 1.4156 -0.4743 -2.1019 37 1 1.9835 -1.8097 -1.0842 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083427241.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:03 Heat of formation + Delta-G solvation = -55.442261 kcal Electronic energy + Delta-G solvation = -14549.292596 eV Core-core repulsion = 12324.001424 eV Total energy + Delta-G solvation = -2225.291172 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.45607 -37.07097 -35.01287 -33.49065 -32.32910 -28.66650 -27.24939 -25.15404 -23.94816 -23.60056 -21.44400 -20.20661 -18.98400 -16.72994 -16.26822 -15.82450 -15.68270 -15.51489 -15.26348 -14.88226 -14.29762 -13.95757 -13.82424 -13.50407 -13.24741 -12.96957 -12.66133 -12.53197 -12.34162 -12.00074 -11.92269 -11.75108 -11.45528 -11.34079 -11.21880 -10.99370 -10.73304 -10.63469 -9.19150 -8.73705 -6.44589 1.52129 1.62053 1.80721 2.54480 3.11264 3.38547 3.61963 3.78138 3.95427 4.13580 4.18380 4.23952 4.32619 4.49503 4.52209 4.69879 4.74795 4.80328 4.85031 4.91005 5.00825 5.08341 5.10949 5.14171 5.18463 5.28213 5.36329 5.40431 5.43026 5.49292 5.60088 5.74819 6.00679 6.37926 6.55087 6.71113 7.38371 8.65723 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062779 B = 0.006227 C = 0.005956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.900645 B = 4495.596829 C = 4699.967910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.087 4.087 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.111 4.111 6 C -0.139 4.139 7 C 0.087 3.913 8 H 0.048 0.952 9 N -0.682 5.682 10 C 0.200 3.800 11 C -0.613 4.613 12 H 0.056 0.944 13 C -0.038 4.038 14 N -0.936 5.936 15 Si 1.128 2.872 16 H -0.270 1.270 17 H -0.270 1.270 18 H -0.282 1.282 19 C -0.097 4.097 20 C -0.108 4.108 21 H 0.053 0.947 22 H 0.061 0.939 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.045 0.955 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.031 0.969 29 H 0.077 0.923 30 H 0.334 0.666 31 H -0.011 1.011 32 H -0.045 1.045 33 H 0.252 0.748 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.890 8.269 -1.588 17.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.105 4.105 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.178 4.178 7 C -0.023 4.023 8 H 0.066 0.934 9 N -0.311 5.311 10 C 0.072 3.928 11 C -0.651 4.651 12 H 0.074 0.926 13 C -0.235 4.235 14 N -0.574 5.574 15 Si 0.948 3.052 16 H -0.195 1.195 17 H -0.194 1.194 18 H -0.207 1.207 19 C -0.135 4.135 20 C -0.145 4.145 21 H 0.072 0.928 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.093 0.907 25 H 0.063 0.937 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.096 0.904 30 H 0.152 0.848 31 H 0.007 0.993 32 H -0.027 1.027 33 H 0.061 0.939 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -13.567 7.108 -1.865 15.429 hybrid contribution -1.174 0.831 0.958 1.728 sum -14.741 7.939 -0.907 16.767 Atomic orbital electron populations 1.21847 0.93672 1.01960 1.02295 1.20893 0.96310 0.99605 0.93711 0.90837 1.21401 0.95965 0.99155 0.98276 1.21787 0.95374 1.00817 0.96919 1.21997 0.98434 1.00141 0.97195 1.21372 0.89274 0.97565 0.94097 0.93364 1.60588 1.02294 1.14866 1.53359 1.19297 0.92612 0.90965 0.89937 1.22424 0.96571 1.31193 1.14873 0.92608 1.27543 1.09054 0.92113 0.94789 1.70903 1.22752 1.41271 1.22440 0.82808 0.69687 0.77127 0.75588 1.19549 1.19440 1.20704 1.20371 0.94316 1.01393 0.97394 1.20514 0.95371 0.99979 0.98681 0.92751 0.91968 0.91855 0.90687 0.93657 0.90735 0.94381 0.95046 0.90434 0.84838 0.99348 1.02719 0.93865 0.91574 0.92763 0.90457 0.93280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 8.88 71.98 0.64 -1.60 16 2 C -0.09 -1.78 2.39 -11.19 -0.03 -1.81 16 3 H 0.07 1.50 6.99 -2.39 -0.02 1.49 16 4 C -0.11 -2.59 4.89 30.14 0.15 -2.44 16 5 C -0.11 -3.03 5.84 31.23 0.18 -2.85 16 6 C -0.14 -4.44 4.70 30.05 0.14 -4.30 16 7 C 0.09 3.16 2.13 44.52 0.10 3.26 16 8 H 0.05 1.95 6.66 -2.39 -0.02 1.94 16 9 N -0.68 -30.86 6.16 -497.63 -3.07 -33.92 16 10 C 0.20 11.13 4.48 85.55 0.38 11.52 16 11 C -0.61 -36.51 9.32 25.60 0.24 -36.27 16 12 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 13 C -0.04 -2.25 5.46 84.65 0.46 -1.79 16 14 N -0.94 -59.62 13.65 21.45 0.29 -59.32 16 15 Si 1.13 51.46 29.90 68.60 2.05 53.51 16 16 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 C -0.10 -2.81 4.90 28.74 0.14 -2.66 16 20 C -0.11 -2.53 4.69 28.74 0.13 -2.39 16 21 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 22 H 0.06 0.88 8.11 -2.39 -0.02 0.86 16 23 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 24 H 0.07 1.48 7.69 -2.39 -0.02 1.46 16 25 H 0.04 1.20 6.64 -2.39 -0.02 1.18 16 26 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.03 1.17 7.19 -2.39 -0.02 1.16 16 29 H 0.08 2.13 6.66 -2.39 -0.02 2.12 16 30 H 0.33 14.51 8.43 -89.69 -0.76 13.75 16 31 H -0.01 -0.69 7.93 -2.39 -0.02 -0.71 16 32 H -0.04 -2.63 7.36 -2.39 -0.02 -2.64 16 33 H 0.25 16.38 7.22 -92.71 -0.67 15.71 16 34 H 0.07 1.73 7.49 -2.38 -0.02 1.72 16 35 H 0.05 1.73 8.12 -2.39 -0.02 1.71 16 36 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 37 H 0.05 1.25 7.47 -2.38 -0.02 1.23 16 Total: -1.00 -66.40 281.02 2.18 -64.22 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.36 Total: 16.85 kcal Atomic # 6 Polarization: -43.87 SS G_CDS: 2.54 Total: -41.33 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -2.77 Total: -93.25 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -66.40 2.18 -64.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083427241.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.778 kcal (2) G-P(sol) polarization free energy of solvation -66.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds