Wall clock time and date at job start Mon Mar 30 2020 02:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46935 * 2 1 4 4 N 1.46901 * 109.47172 * 119.99777 * 2 1 3 5 5 C 1.46898 * 110.99863 * 167.67746 * 4 2 1 6 6 C 1.50706 * 109.47045 * 293.95435 * 5 4 2 7 7 H 1.07995 * 119.99870 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99989 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00115 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47291 * 90.00174 * 10 8 6 12 12 H 1.48509 * 109.47086 * 210.00300 * 10 8 6 13 13 H 1.48497 * 109.47110 * 329.99615 * 10 8 6 14 14 C 1.46898 * 110.99949 * 291.63065 * 4 2 1 15 15 C 1.52999 * 109.47049 * 164.90500 * 14 4 2 16 16 C 1.52999 * 109.47179 * 185.24424 * 15 14 4 17 17 C 1.53001 * 117.49643 * 243.74807 * 16 15 14 18 18 C 1.53010 * 117.49867 * 175.08869 * 16 15 14 19 19 H 1.09002 * 109.47440 * 306.36036 * 1 2 3 20 20 H 1.09006 * 109.46876 * 66.35829 * 1 2 3 21 21 H 1.08996 * 109.46933 * 186.35808 * 1 2 3 22 22 H 1.08996 * 109.47031 * 240.00474 * 2 1 3 23 23 H 1.08998 * 109.46867 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.46710 * 299.99973 * 3 2 1 25 25 H 1.09001 * 109.46587 * 59.99985 * 3 2 1 26 26 H 1.08992 * 109.47355 * 53.95633 * 5 4 2 27 27 H 1.09005 * 109.47134 * 173.95794 * 5 4 2 28 28 H 0.97004 * 120.00103 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.47547 * 44.90606 * 14 4 2 30 30 H 1.09003 * 109.47087 * 284.90587 * 14 4 2 31 31 H 1.09007 * 109.47411 * 305.24705 * 15 14 4 32 32 H 1.09005 * 109.47153 * 65.24625 * 15 14 4 33 33 H 1.08997 * 115.55124 * 29.41642 * 16 15 14 34 34 H 1.09001 * 117.50310 * 0.02562 * 17 16 15 35 35 H 1.09007 * 117.49758 * 145.02345 * 17 16 15 36 36 H 1.08987 * 117.49594 * 214.97982 * 18 16 15 37 37 H 1.09003 * 117.49649 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4584 -0.9708 1.0962 6 6 3.6999 -1.9614 -0.0135 7 1 2.8679 -2.3461 -0.5846 8 6 4.9830 -2.3774 -0.2990 9 7 5.1938 -3.2424 -1.2671 10 14 6.4219 -1.7137 0.6901 11 1 6.6640 -2.5923 1.8625 12 1 7.6367 -1.6817 -0.1636 13 1 6.1092 -0.3393 1.1575 14 6 1.7185 0.0792 2.4126 15 6 1.8916 -0.8150 3.6419 16 6 1.4530 -0.0520 4.8935 17 6 2.5180 0.2391 5.9528 18 6 1.4415 -0.8162 6.2190 19 1 -0.3634 0.6093 0.8276 20 1 -0.3633 0.4121 -0.9415 21 1 -0.3633 -1.0213 0.1138 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.9928 -0.0458 0.8801 27 1 3.8167 -1.3859 2.0382 28 1 6.0966 -3.5348 -1.4682 29 1 0.6911 0.4404 2.3679 30 1 2.3992 0.9278 2.4818 31 1 1.2800 -1.7102 3.5291 32 1 2.9391 -1.1005 3.7390 33 1 0.6784 0.6991 4.7388 34 1 3.5311 -0.1125 5.7579 35 1 2.4437 1.1816 6.4954 36 1 0.6596 -0.5676 6.9364 37 1 1.7460 -1.8627 6.1993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083926678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:48 Heat of formation + Delta-G solvation = 15.363711 kcal Electronic energy + Delta-G solvation = -14551.349565 eV Core-core repulsion = 12329.128771 eV Total energy + Delta-G solvation = -2222.220794 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.28947 -36.93263 -32.68211 -31.76971 -29.65002 -26.66714 -26.54377 -22.89879 -22.27411 -21.76134 -20.15149 -18.51670 -16.69725 -15.67424 -15.13574 -14.71652 -14.14889 -13.87791 -13.54102 -13.03705 -12.93940 -12.39876 -12.08323 -11.71728 -11.48891 -11.46439 -11.29021 -11.02799 -10.87615 -10.59662 -10.53703 -10.35450 -10.01059 -9.82534 -9.78448 -9.57584 -9.16047 -8.52911 -7.25408 -6.02295 -3.98429 3.29416 3.36937 3.39278 3.91228 4.44254 4.62317 5.00811 5.06450 5.11571 5.30111 5.50695 5.52770 5.68599 5.71185 5.74628 5.90779 5.93898 6.01443 6.09340 6.13608 6.18087 6.19722 6.28514 6.35861 6.48094 6.56757 6.72898 6.73347 6.84888 7.03790 7.12828 7.67795 8.01264 8.17106 8.71677 9.07057 9.60312 11.10978 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.010377 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.069634 B = 2697.743003 C = 3548.337503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.079 3.921 3 C -0.180 4.180 4 N -0.522 5.522 5 C 0.159 3.841 6 C -0.506 4.506 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.902 5.902 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.268 1.268 14 C 0.056 3.944 15 C -0.086 4.086 16 C -0.145 4.145 17 C -0.186 4.186 18 C -0.183 4.183 19 H 0.044 0.956 20 H 0.048 0.952 21 H 0.060 0.940 22 H 0.097 0.903 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.046 0.954 26 H -0.010 1.010 27 H 0.024 0.976 28 H 0.263 0.737 29 H 0.064 0.936 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.010 8.184 9.720 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.030 4.030 3 C -0.239 4.239 4 N -0.245 5.245 5 C 0.032 3.968 6 C -0.544 4.544 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.073 4.073 15 C -0.124 4.124 16 C -0.164 4.164 17 C -0.223 4.223 18 C -0.220 4.220 19 H 0.063 0.937 20 H 0.067 0.933 21 H 0.079 0.921 22 H 0.115 0.885 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.104 7.624 9.652 14.205 hybrid contribution 1.395 1.096 0.476 1.836 sum -5.710 8.720 10.129 14.534 Atomic orbital electron populations 1.21840 0.95939 1.01809 1.00085 1.21622 0.93960 0.91783 0.95588 1.22444 1.01963 0.98807 1.00719 1.62160 1.18591 1.43610 1.00152 1.20214 0.83561 0.95467 0.97526 1.21067 0.94060 1.23684 1.15586 0.90164 1.24890 0.98542 0.94850 0.95060 1.69898 1.21359 1.32376 1.30479 0.86911 0.82651 0.80022 0.80493 1.20199 1.21273 1.19291 1.22044 0.99721 0.94610 0.90890 1.21193 1.01619 0.98331 0.91232 1.22363 1.01249 1.02213 0.90563 1.23041 0.95444 1.00021 1.03777 1.22946 1.01785 0.97670 0.99635 0.93747 0.93252 0.92058 0.88490 0.92426 0.93104 0.93454 0.99238 0.95816 0.92758 0.91778 0.95786 0.90751 0.91790 0.88207 0.88876 0.89349 0.89267 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 9.06 37.16 0.34 -1.85 16 2 C 0.08 1.51 2.77 -67.71 -0.19 1.33 16 3 C -0.18 -3.09 8.46 37.16 0.31 -2.78 16 4 N -0.52 -10.86 4.39 -228.08 -1.00 -11.86 16 5 C 0.16 3.85 3.54 -4.97 -0.02 3.84 16 6 C -0.51 -14.39 8.89 -34.44 -0.31 -14.69 16 7 H 0.08 2.48 7.45 -52.49 -0.39 2.09 16 8 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 9 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 10 Si 0.87 21.72 27.47 -169.99 -4.67 17.05 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 13 H -0.27 -6.47 6.54 56.52 0.37 -6.10 16 14 C 0.06 0.96 3.60 -3.83 -0.01 0.95 16 15 C -0.09 -1.39 5.44 -26.73 -0.15 -1.53 16 16 C -0.15 -1.91 5.73 -90.61 -0.52 -2.43 16 17 C -0.19 -2.26 10.18 -26.69 -0.27 -2.54 16 18 C -0.18 -2.15 10.26 -26.68 -0.27 -2.42 16 19 H 0.04 0.63 6.64 -51.93 -0.34 0.29 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 22 H 0.10 2.14 6.62 -51.93 -0.34 1.80 16 23 H 0.06 1.09 6.67 -51.93 -0.35 0.75 16 24 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 25 H 0.05 0.74 6.65 -51.93 -0.35 0.39 16 26 H -0.01 -0.25 5.58 -51.93 -0.29 -0.54 16 27 H 0.02 0.58 5.87 -51.93 -0.30 0.28 16 28 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 29 H 0.06 1.00 6.20 -51.93 -0.32 0.68 16 30 H 0.02 0.42 7.10 -51.93 -0.37 0.05 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.13 6.50 -51.93 -0.34 0.79 16 33 H 0.10 1.21 8.07 -51.93 -0.42 0.79 16 34 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 35 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 36 H 0.09 0.90 8.14 -51.94 -0.42 0.48 16 37 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 286.66 15.07 4.32 4.32 Total: -1.00 -29.67 286.66 -8.12 -37.78 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -6.36 Total: -0.04 kcal Atomic # 6 Polarization: -19.08 SS G_CDS: -1.18 Total: -20.26 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.23 Total: -38.86 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.67 -8.12 -37.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.148 kcal (2) G-P(sol) polarization free energy of solvation -29.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds