Wall clock time and date at job start Mon Mar 30 2020 02:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53011 * 109.46935 * 2 1 4 4 N 1.46901 * 109.47172 * 119.99777 * 2 1 3 5 5 C 1.46898 * 110.99863 * 167.67746 * 4 2 1 6 6 C 1.50706 * 109.47045 * 293.95435 * 5 4 2 7 7 H 1.07995 * 119.99870 * 359.97438 * 6 5 4 8 8 C 1.37871 * 119.99949 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99989 * 179.97438 * 8 6 5 10 10 Si 1.86800 * 120.00115 * 0.02562 * 8 6 5 11 11 H 1.48496 * 109.47291 * 90.00174 * 10 8 6 12 12 H 1.48509 * 109.47086 * 210.00300 * 10 8 6 13 13 H 1.48497 * 109.47110 * 329.99615 * 10 8 6 14 14 C 1.46898 * 110.99949 * 291.63065 * 4 2 1 15 15 C 1.52999 * 109.47049 * 164.90500 * 14 4 2 16 16 C 1.52999 * 109.47179 * 185.24424 * 15 14 4 17 17 C 1.53001 * 117.49643 * 243.74807 * 16 15 14 18 18 C 1.53010 * 117.49867 * 175.08869 * 16 15 14 19 19 H 1.09002 * 109.47440 * 306.36036 * 1 2 3 20 20 H 1.09006 * 109.46876 * 66.35829 * 1 2 3 21 21 H 1.08996 * 109.46933 * 186.35808 * 1 2 3 22 22 H 1.08996 * 109.47031 * 240.00474 * 2 1 3 23 23 H 1.08998 * 109.46867 * 179.97438 * 3 2 1 24 24 H 1.08998 * 109.46710 * 299.99973 * 3 2 1 25 25 H 1.09001 * 109.46587 * 59.99985 * 3 2 1 26 26 H 1.08992 * 109.47355 * 53.95633 * 5 4 2 27 27 H 1.09005 * 109.47134 * 173.95794 * 5 4 2 28 28 H 0.97004 * 120.00103 * 179.97438 * 9 8 6 29 29 H 1.08996 * 109.47547 * 44.90606 * 14 4 2 30 30 H 1.09003 * 109.47087 * 284.90587 * 14 4 2 31 31 H 1.09007 * 109.47411 * 305.24705 * 15 14 4 32 32 H 1.09005 * 109.47153 * 65.24625 * 15 14 4 33 33 H 1.08997 * 115.55124 * 29.41642 * 16 15 14 34 34 H 1.09001 * 117.50310 * 0.02562 * 17 16 15 35 35 H 1.09007 * 117.49758 * 145.02345 * 17 16 15 36 36 H 1.08987 * 117.49594 * 214.97982 * 18 16 15 37 37 H 1.09003 * 117.49649 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 3.4584 -0.9708 1.0962 6 6 3.6999 -1.9614 -0.0135 7 1 2.8679 -2.3461 -0.5846 8 6 4.9830 -2.3774 -0.2990 9 7 5.1938 -3.2424 -1.2671 10 14 6.4219 -1.7137 0.6901 11 1 6.6640 -2.5923 1.8625 12 1 7.6367 -1.6817 -0.1636 13 1 6.1092 -0.3393 1.1575 14 6 1.7185 0.0792 2.4126 15 6 1.8916 -0.8150 3.6419 16 6 1.4530 -0.0520 4.8935 17 6 2.5180 0.2391 5.9528 18 6 1.4415 -0.8162 6.2190 19 1 -0.3634 0.6093 0.8276 20 1 -0.3633 0.4121 -0.9415 21 1 -0.3633 -1.0213 0.1138 22 1 1.8933 -0.5137 -0.8900 23 1 3.1300 1.4426 0.0005 24 1 1.6766 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.9928 -0.0458 0.8801 27 1 3.8167 -1.3859 2.0382 28 1 6.0966 -3.5348 -1.4682 29 1 0.6911 0.4404 2.3679 30 1 2.3992 0.9278 2.4818 31 1 1.2800 -1.7102 3.5291 32 1 2.9391 -1.1005 3.7390 33 1 0.6784 0.6991 4.7388 34 1 3.5311 -0.1125 5.7579 35 1 2.4437 1.1816 6.4954 36 1 0.6596 -0.5676 6.9364 37 1 1.7460 -1.8627 6.1993 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083926678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:47 Heat of formation + Delta-G solvation = -2.900583 kcal Electronic energy + Delta-G solvation = -14552.141565 eV Core-core repulsion = 12329.128771 eV Total energy + Delta-G solvation = -2223.012793 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74176 -38.07334 -34.84040 -33.21166 -31.36834 -28.34764 -27.99039 -24.42298 -23.58207 -23.17169 -21.25438 -20.12768 -18.85042 -16.99835 -16.63173 -16.18746 -15.93015 -15.18884 -14.92973 -14.64547 -14.55205 -14.26260 -13.41722 -13.32833 -12.89525 -12.75603 -12.60026 -12.43810 -12.34438 -12.15371 -11.99523 -11.88947 -11.76608 -11.44795 -11.23818 -10.98189 -10.77652 -10.67298 -8.89926 -8.28526 -6.30112 1.31439 1.32379 1.43163 2.32612 2.94048 3.04572 3.23940 3.86107 4.06513 4.10607 4.13367 4.28567 4.32054 4.50229 4.55906 4.66781 4.71527 4.80917 4.81254 4.85684 4.90193 4.98800 5.04663 5.07866 5.16655 5.23077 5.25999 5.30301 5.41892 5.47536 5.52205 5.61380 6.06056 6.49721 6.73340 6.77380 7.33060 8.88282 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.021817 B = 0.010377 C = 0.007889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1283.069634 B = 2697.743003 C = 3548.337503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.073 3.927 3 C -0.172 4.172 4 N -0.538 5.538 5 C 0.173 3.827 6 C -0.511 4.511 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.948 5.948 10 Si 0.942 3.058 11 H -0.266 1.266 12 H -0.281 1.281 13 H -0.254 1.254 14 C 0.059 3.941 15 C -0.082 4.082 16 C -0.154 4.154 17 C -0.185 4.185 18 C -0.176 4.176 19 H 0.067 0.933 20 H 0.068 0.932 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.032 0.968 24 H 0.070 0.930 25 H 0.069 0.931 26 H -0.014 1.014 27 H 0.023 0.977 28 H 0.266 0.734 29 H 0.088 0.912 30 H 0.026 0.974 31 H 0.062 0.938 32 H 0.042 0.958 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.617 10.265 11.813 17.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.036 4.036 3 C -0.231 4.231 4 N -0.262 5.262 5 C 0.045 3.955 6 C -0.549 4.549 7 H 0.055 0.945 8 C -0.189 4.189 9 N -0.590 5.590 10 Si 0.765 3.235 11 H -0.191 1.191 12 H -0.206 1.206 13 H -0.178 1.178 14 C -0.068 4.068 15 C -0.120 4.120 16 C -0.172 4.172 17 C -0.222 4.222 18 C -0.213 4.213 19 H 0.086 0.914 20 H 0.087 0.913 21 H 0.067 0.933 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.089 0.911 25 H 0.087 0.913 26 H 0.004 0.996 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.106 0.894 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.060 0.940 33 H 0.135 0.865 34 H 0.100 0.900 35 H 0.126 0.874 36 H 0.129 0.871 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.734 9.716 11.754 17.099 hybrid contribution 1.491 0.401 -0.235 1.562 sum -6.243 10.117 11.519 16.553 Atomic orbital electron populations 1.21747 0.92954 1.01756 1.02167 1.21641 0.96295 0.92387 0.93247 1.22345 1.00294 0.97594 1.02818 1.62090 1.16116 1.45715 1.02278 1.19908 0.86156 0.93899 0.95507 1.21294 0.93030 1.24293 1.16293 0.94455 1.25798 1.01751 0.95117 0.96208 1.70050 1.22287 1.34142 1.32477 0.85795 0.78613 0.80030 0.79026 1.19068 1.20621 1.17788 1.22125 1.00984 0.94321 0.89397 1.21104 1.00111 0.98239 0.92544 1.22278 1.02404 1.02943 0.89598 1.23111 0.94783 1.01084 1.03259 1.23031 1.02052 0.97270 0.98911 0.91408 0.91283 0.93288 0.92899 0.94882 0.91055 0.91253 0.99593 0.95856 0.92521 0.89357 0.95617 0.91978 0.93962 0.86502 0.90004 0.87374 0.87071 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.06 71.98 0.65 -3.17 16 2 C 0.07 2.77 2.77 44.92 0.12 2.89 16 3 C -0.17 -5.60 8.46 71.99 0.61 -4.99 16 4 N -0.54 -22.37 4.39 -875.51 -3.84 -26.21 16 5 C 0.17 8.47 3.54 85.56 0.30 8.77 16 6 C -0.51 -30.21 8.89 25.60 0.23 -29.98 16 7 H 0.04 2.46 7.45 -2.91 -0.02 2.44 16 8 C 0.01 0.49 5.47 84.65 0.46 0.95 16 9 N -0.95 -60.34 13.96 21.45 0.30 -60.04 16 10 Si 0.94 45.19 27.47 68.60 1.88 47.08 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 13 H -0.25 -11.51 6.54 99.48 0.65 -10.86 16 14 C 0.06 1.94 3.60 86.30 0.31 2.25 16 15 C -0.08 -2.55 5.44 30.59 0.17 -2.38 16 16 C -0.15 -3.63 5.73 -10.79 -0.06 -3.69 16 17 C -0.19 -4.02 10.18 30.62 0.31 -3.70 16 18 C -0.18 -3.64 10.26 30.62 0.31 -3.33 16 19 H 0.07 1.70 6.64 -2.39 -0.02 1.68 16 20 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 21 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 22 H 0.05 2.45 6.62 -2.39 -0.02 2.44 16 23 H 0.03 1.22 6.67 -2.39 -0.02 1.20 16 24 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 25 H 0.07 1.94 6.65 -2.39 -0.02 1.93 16 26 H -0.01 -0.67 5.58 -2.39 -0.01 -0.68 16 27 H 0.02 1.15 5.87 -2.38 -0.01 1.14 16 28 H 0.27 15.77 8.31 -92.70 -0.77 15.00 16 29 H 0.09 2.46 6.20 -2.39 -0.01 2.44 16 30 H 0.03 0.84 7.10 -2.39 -0.02 0.82 16 31 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 32 H 0.04 1.47 6.50 -2.38 -0.02 1.46 16 33 H 0.12 2.39 8.07 -2.39 -0.02 2.37 16 34 H 0.08 1.96 8.03 -2.39 -0.02 1.94 16 35 H 0.11 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 1.91 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.02 286.66 2.72 -63.30 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.96 Total: 12.26 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 3.42 Total: -36.38 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -3.54 Total: -86.26 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.88 Total: 47.08 kcal Total: -66.02 2.72 -63.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083926678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.401 kcal (2) G-P(sol) polarization free energy of solvation -66.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds