Wall clock time and date at job start Mon Mar 30 2020 02:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09008 * 108.77853 * 2 1 4 4 C 1.54055 * 108.81517 * 241.69721 * 2 1 3 5 5 C 1.50480 * 112.49560 * 197.42380 * 4 2 1 6 6 C 1.54245 * 108.51794 * 94.15216 * 5 4 2 7 7 C 1.45541 * 112.40343 * 280.00745 * 6 5 4 8 8 C 1.54372 * 112.33953 * 61.96973 * 7 6 5 9 9 C 1.50475 * 108.45469 * 279.90198 * 8 7 6 10 10 H 1.09000 * 108.87849 * 333.53973 * 9 8 7 11 11 N 1.46901 * 108.87678 * 214.99326 * 9 8 7 12 12 C 1.46899 * 110.99998 * 83.55687 * 11 9 8 13 13 C 1.50702 * 109.47509 * 179.97438 * 12 11 9 14 14 H 1.08002 * 119.99441 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00075 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00481 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99886 * 179.73007 * 15 13 12 18 18 H 1.48502 * 109.46964 * 270.27509 * 17 15 13 19 19 H 1.48505 * 109.47036 * 30.26897 * 17 15 13 20 20 H 1.48490 * 109.47395 * 150.27411 * 17 15 13 21 21 H 1.09002 * 109.47602 * 301.59644 * 1 2 3 22 22 H 1.09002 * 109.46626 * 61.60183 * 1 2 3 23 23 H 1.08997 * 109.46664 * 181.59446 * 1 2 3 24 24 H 1.09004 * 108.87495 * 318.19745 * 4 2 1 25 25 H 1.08994 * 108.88022 * 76.74209 * 4 2 1 26 26 H 1.08998 * 109.62510 * 213.86086 * 5 4 2 27 27 H 1.08992 * 109.62694 * 334.24635 * 5 4 2 28 28 H 1.09000 * 108.89584 * 40.76085 * 6 5 4 29 29 H 1.08990 * 108.89611 * 159.35168 * 6 5 4 30 30 H 1.09000 * 108.89402 * 182.68982 * 7 6 5 31 31 H 1.08997 * 108.89798 * 301.27572 * 7 6 5 32 32 H 1.08998 * 109.60404 * 160.24799 * 8 7 6 33 33 H 1.08996 * 109.71988 * 39.62099 * 8 7 6 34 34 H 1.00891 * 111.00010 * 207.51384 * 11 9 8 35 35 H 1.09009 * 109.47165 * 60.00320 * 12 11 9 36 36 H 1.08998 * 109.47687 * 300.00771 * 12 11 9 37 37 H 0.97005 * 119.99656 * 359.72741 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8810 1.0321 0.0000 4 6 2.0269 -0.6914 -1.2839 5 6 3.4682 -1.1135 -1.1897 6 6 3.5189 -2.5823 -0.7214 7 6 3.3392 -2.7124 0.7170 8 6 1.9628 -2.1939 1.1856 9 6 2.0268 -0.6936 1.2829 10 1 3.0590 -0.3959 1.4676 11 7 1.1966 -0.2547 2.4125 12 6 1.9389 -0.3435 3.6771 13 6 1.0573 0.1144 4.8103 14 1 0.0466 0.4386 4.6110 15 6 1.5411 0.1195 6.1014 16 7 2.7717 -0.2758 6.3441 17 14 0.4508 0.6943 7.5051 18 1 0.6182 2.1576 7.6946 19 1 -0.9681 0.3959 7.1839 20 1 0.8354 -0.0136 8.7524 21 1 -0.3634 0.5384 0.8753 22 1 -0.3632 0.4888 -0.9040 23 1 -0.3632 -1.0273 0.0286 24 1 1.4129 -1.5725 -1.4702 25 1 1.9168 -0.0020 -2.1209 26 1 3.9404 -1.0245 -2.1680 27 1 3.9893 -0.4793 -0.4726 28 1 2.7320 -3.1415 -1.2275 29 1 4.4848 -3.0068 -0.9949 30 1 3.4326 -3.7633 0.9907 31 1 4.1207 -2.1456 1.2231 32 1 1.7271 -2.6144 2.1632 33 1 1.1968 -2.4817 0.4657 34 1 0.8476 0.6800 2.2630 35 1 2.8227 0.2924 3.6251 36 1 2.2438 -1.3760 3.8478 37 1 3.3378 -0.5746 5.6152 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083949053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:53 Heat of formation + Delta-G solvation = -49.207791 kcal Electronic energy + Delta-G solvation = -14782.842999 eV Core-core repulsion = 12557.822174 eV Total energy + Delta-G solvation = -2225.020825 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.54858 -36.82349 -35.07337 -34.04571 -31.61620 -28.61648 -27.69896 -25.00955 -24.14775 -23.40802 -21.40492 -19.80626 -18.92683 -17.13745 -16.47768 -16.09690 -15.63966 -15.21562 -15.09616 -14.72641 -14.55804 -13.94509 -13.63611 -13.49523 -13.16179 -12.81959 -12.73513 -12.55693 -12.47509 -11.93538 -11.86170 -11.62702 -11.43248 -11.27094 -11.13126 -11.05609 -10.69810 -10.63848 -9.22249 -8.73903 -6.44574 1.51404 1.61394 1.79970 2.54037 3.11032 3.37542 3.64816 3.74939 4.04344 4.11860 4.21102 4.29607 4.36226 4.49261 4.50607 4.69888 4.82707 4.83986 4.87532 4.95192 4.98945 5.06668 5.11744 5.21760 5.24752 5.27352 5.35346 5.43083 5.48330 5.49804 5.59604 5.77158 6.00686 6.38052 6.55421 6.71820 7.38539 8.65526 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.046408 B = 0.007319 C = 0.006658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.200029 B = 3824.790037 C = 4204.476815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.087 4.087 3 H 0.056 0.944 4 C -0.103 4.103 5 C -0.120 4.120 6 C -0.111 4.111 7 C -0.116 4.116 8 C -0.099 4.099 9 C 0.093 3.907 10 H 0.007 0.993 11 N -0.676 5.676 12 C 0.199 3.801 13 C -0.611 4.611 14 H 0.056 0.944 15 C -0.039 4.039 16 N -0.936 5.936 17 Si 1.127 2.873 18 H -0.270 1.270 19 H -0.269 1.269 20 H -0.282 1.282 21 H 0.046 0.954 22 H 0.068 0.932 23 H 0.052 0.948 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.044 0.956 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.036 0.964 32 H 0.034 0.966 33 H 0.078 0.922 34 H 0.332 0.668 35 H -0.054 1.054 36 H -0.006 1.006 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.478 -1.660 -16.170 16.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.106 4.106 3 H 0.075 0.925 4 C -0.141 4.141 5 C -0.157 4.157 6 C -0.149 4.149 7 C -0.154 4.154 8 C -0.137 4.137 9 C -0.017 4.017 10 H 0.025 0.975 11 N -0.307 5.307 12 C 0.071 3.929 13 C -0.649 4.649 14 H 0.074 0.926 15 C -0.236 4.236 16 N -0.574 5.574 17 Si 0.948 3.052 18 H -0.196 1.196 19 H -0.194 1.194 20 H -0.207 1.207 21 H 0.065 0.935 22 H 0.087 0.913 23 H 0.071 0.929 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.151 0.849 35 H -0.036 1.036 36 H 0.012 0.988 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.822 -2.035 -14.478 14.733 hybrid contribution 1.110 0.445 -1.259 1.736 sum -0.712 -1.590 -15.736 15.833 Atomic orbital electron populations 1.21716 0.94114 1.01989 1.01372 1.21665 0.96991 0.98470 0.93471 0.92530 1.21341 0.96235 1.00890 0.95640 1.21375 0.96900 0.95949 1.01482 1.20459 1.02594 0.97053 0.94749 1.20490 0.96095 1.00796 0.97972 1.21321 0.97712 0.94390 1.00233 1.21439 0.93328 0.96049 0.90892 0.97518 1.60804 1.38444 1.30074 1.01370 1.19333 0.91416 0.93254 0.88903 1.22417 1.00993 1.47336 0.94169 0.92574 1.27544 0.98494 0.94346 1.03216 1.70901 1.08388 1.42668 1.35418 0.82813 0.73570 0.76813 0.72042 1.19581 1.19397 1.20707 0.93454 0.91293 0.92895 0.91152 0.90541 0.89897 0.93689 0.90882 0.91294 0.91887 0.94530 0.94710 0.90297 0.84913 1.03635 0.98826 0.93898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 8.52 71.98 0.61 -2.98 16 2 C -0.09 -2.44 2.38 -10.07 -0.02 -2.46 16 3 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 4 C -0.10 -2.22 4.68 30.14 0.14 -2.08 16 5 C -0.12 -2.57 5.60 30.20 0.17 -2.40 16 6 C -0.11 -2.43 5.26 28.74 0.15 -2.28 16 7 C -0.12 -3.33 5.27 28.78 0.15 -3.18 16 8 C -0.10 -3.37 5.13 30.24 0.16 -3.21 16 9 C 0.09 3.39 1.72 44.46 0.08 3.47 16 10 H 0.01 0.28 6.25 -2.39 -0.01 0.27 16 11 N -0.68 -30.38 5.34 -497.94 -2.66 -33.04 16 12 C 0.20 11.12 4.45 85.56 0.38 11.50 16 13 C -0.61 -36.46 9.32 25.60 0.24 -36.23 16 14 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 15 C -0.04 -2.32 5.46 84.65 0.46 -1.86 16 16 N -0.94 -59.84 13.65 21.45 0.29 -59.54 16 17 Si 1.13 51.60 29.90 68.60 2.05 53.65 16 18 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H 0.05 1.44 6.37 -2.39 -0.02 1.42 16 22 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.05 1.44 7.37 -2.39 -0.02 1.42 16 24 H 0.07 1.43 6.47 -2.39 -0.02 1.42 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.04 1.15 6.99 -2.39 -0.02 1.13 16 28 H 0.07 1.42 7.47 -2.39 -0.02 1.40 16 29 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.04 1.19 7.46 -2.39 -0.02 1.17 16 32 H 0.03 1.43 7.08 -2.39 -0.02 1.42 16 33 H 0.08 2.38 6.19 -2.39 -0.01 2.37 16 34 H 0.33 14.42 6.93 -89.70 -0.62 13.80 16 35 H -0.05 -3.22 7.91 -2.38 -0.02 -3.24 16 36 H -0.01 -0.38 7.20 -2.39 -0.02 -0.39 16 37 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 Total: -1.00 -66.96 275.58 2.71 -64.25 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.51 Total: 16.39 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 2.52 Total: -41.71 kcal Atomic # 7 Polarization: -90.22 SS G_CDS: -2.37 Total: -92.58 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -66.96 2.71 -64.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083949053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.047 kcal (2) G-P(sol) polarization free energy of solvation -66.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds