Wall clock time and date at job start Mon Mar 30 2020 02:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.78379 * 2 1 4 4 C 1.50477 * 109.62686 * 120.49005 * 2 1 3 5 5 C 1.54068 * 112.49584 * 213.86034 * 4 2 1 6 6 C 1.54072 * 112.81699 * 318.28237 * 5 4 2 7 7 C 1.50475 * 112.49585 * 318.28640 * 6 5 4 8 8 C 1.54240 * 108.52447 * 94.14983 * 7 6 5 9 9 C 1.45538 * 112.40297 * 280.01329 * 8 7 6 10 10 H 1.09000 * 108.90026 * 301.17758 * 9 8 7 11 11 N 1.46906 * 108.89323 * 182.69248 * 9 8 7 12 12 C 1.46900 * 110.99931 * 302.54498 * 11 9 8 13 13 C 1.50695 * 109.47198 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00132 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99695 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47466 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46866 * 120.00025 * 17 15 13 20 20 H 1.48497 * 109.47197 * 239.99821 * 17 15 13 21 21 H 1.09002 * 109.47735 * 175.30504 * 1 2 3 22 22 H 1.09004 * 109.47179 * 295.31381 * 1 2 3 23 23 H 1.08999 * 109.47171 * 55.30606 * 1 2 3 24 24 H 1.09001 * 108.87379 * 334.63817 * 4 2 1 25 25 H 1.08994 * 108.87734 * 93.08081 * 4 2 1 26 26 H 1.09004 * 108.80789 * 197.42532 * 5 4 2 27 27 H 1.08998 * 108.81306 * 79.14356 * 5 4 2 28 28 H 1.09000 * 108.87522 * 197.50748 * 6 5 4 29 29 H 1.08998 * 108.79466 * 79.00981 * 6 5 4 30 30 H 1.09004 * 109.62704 * 334.43483 * 7 6 5 31 31 H 1.09006 * 109.62541 * 213.86272 * 7 6 5 32 32 H 1.09003 * 108.89259 * 159.25910 * 8 7 6 33 33 H 1.08996 * 108.89336 * 40.76401 * 8 7 6 34 34 H 1.00900 * 110.99872 * 66.49988 * 11 9 8 35 35 H 1.09001 * 109.47116 * 300.00439 * 12 11 9 36 36 H 1.09011 * 109.46754 * 59.99936 * 12 11 9 37 37 H 0.97000 * 119.99757 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0354 -0.7191 1.2213 5 6 3.3468 -0.1160 1.7601 6 6 4.3396 0.2516 0.6407 7 6 4.4028 -0.7944 -0.4392 8 6 3.4276 -0.3954 -1.5656 9 6 2.0481 -0.7370 -1.2519 10 1 1.9803 -1.8116 -1.0823 11 7 1.1984 -0.3843 -2.3973 12 6 1.3267 1.0410 -2.7287 13 6 0.4423 1.3648 -3.9051 14 1 -0.1550 0.5892 -4.3612 15 6 0.3965 2.6510 -4.3998 16 7 1.1242 3.5953 -3.8447 17 14 -0.6993 3.0521 -5.8585 18 1 -1.4106 1.8241 -6.2959 19 1 -1.6915 4.0840 -5.4633 20 1 0.1325 3.5673 -6.9756 21 1 -0.3635 -1.0242 -0.0841 22 1 -0.3634 0.4394 0.9290 23 1 -0.3633 0.5849 -0.8449 24 1 1.2760 -0.6658 2.0015 25 1 2.2061 -1.7656 0.9690 26 1 3.8190 -0.8390 2.4253 27 1 3.1120 0.7825 2.3308 28 1 5.3322 0.3708 1.0748 29 1 4.0332 1.1988 0.1967 30 1 4.1126 -1.7619 -0.0293 31 1 5.4167 -0.8508 -0.8355 32 1 3.7186 -0.9082 -2.4824 33 1 3.4968 0.6802 -1.7278 34 1 1.4111 -0.9621 -3.1967 35 1 1.0245 1.6421 -1.8711 36 1 2.3636 1.2635 -2.9811 37 1 1.0916 4.5002 -4.1925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083949054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:57 Heat of formation + Delta-G solvation = -23.781148 kcal Electronic energy + Delta-G solvation = -14964.827837 eV Core-core repulsion = 12740.909594 eV Total energy + Delta-G solvation = -2223.918243 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.29535 -34.87643 -32.90105 -32.50108 -29.83167 -27.32933 -25.99790 -23.27729 -22.67214 -22.02224 -19.39914 -18.49407 -16.61668 -15.15121 -14.95035 -14.50180 -14.21339 -14.02053 -13.20377 -13.04866 -12.83806 -12.36352 -11.99934 -11.80104 -11.50685 -11.28794 -10.95534 -10.88962 -10.63832 -10.34978 -10.32485 -10.26197 -9.94631 -9.85824 -9.77810 -9.47829 -9.06269 -8.42938 -7.14442 -5.99473 -4.00322 3.32462 3.39905 3.44986 4.46380 4.90981 5.03515 5.10879 5.36288 5.41917 5.46943 5.51380 5.58141 5.64694 5.84596 5.98568 6.00854 6.15492 6.26013 6.33217 6.37238 6.43681 6.45575 6.49564 6.57024 6.69272 6.74756 6.82485 7.07758 7.19513 7.44048 7.54514 7.84552 8.20257 8.49245 8.71521 9.10143 9.64273 11.11392 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044547 B = 0.007905 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.405625 B = 3541.230932 C = 3696.915102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.075 4.075 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.111 4.111 8 C -0.153 4.153 9 C 0.096 3.904 10 H 0.057 0.943 11 N -0.686 5.686 12 C 0.189 3.811 13 C -0.512 4.512 14 H 0.061 0.939 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.895 3.105 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.286 1.286 21 H 0.045 0.955 22 H 0.031 0.969 23 H 0.079 0.921 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.325 0.675 35 H 0.033 0.967 36 H -0.011 1.011 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 -7.600 8.735 12.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.192 4.192 9 C -0.015 4.015 10 H 0.075 0.925 11 N -0.314 5.314 12 C 0.063 3.937 13 C -0.551 4.551 14 H 0.079 0.921 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.723 3.277 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.212 1.212 21 H 0.064 0.936 22 H 0.050 0.950 23 H 0.098 0.902 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.092 0.908 34 H 0.141 0.859 35 H 0.051 0.949 36 H 0.007 0.993 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.979 -7.314 9.095 12.331 hybrid contribution 0.439 0.433 -1.242 1.386 sum 4.418 -6.882 7.853 11.338 Atomic orbital electron populations 1.21684 0.94434 1.01566 1.00951 1.20791 0.96445 0.99305 0.92865 0.91402 1.21427 0.96088 0.99690 0.97789 1.21895 0.95607 1.00206 0.97451 1.21343 0.98244 0.99766 0.96339 1.21252 0.98751 0.98825 0.96101 1.21361 0.96853 1.03219 0.97737 1.20348 0.90146 0.97991 0.92973 0.92481 1.60951 1.54808 1.08111 1.07575 1.19628 0.94959 0.82902 0.96243 1.21282 1.25167 0.94576 1.14058 0.92121 1.24976 0.95958 0.96392 0.97276 1.69970 1.40599 1.01759 1.41414 0.86486 0.80425 0.78333 0.82425 1.19720 1.21066 1.21193 0.93602 0.94964 0.90236 0.92554 0.92597 0.92991 0.92660 0.93034 0.91762 0.92131 0.92736 0.93012 0.90767 0.85886 0.94925 0.99340 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.30 8.33 37.16 0.31 -1.99 16 2 C -0.08 -1.28 1.43 -91.23 -0.13 -1.41 16 3 H 0.07 1.30 6.46 -51.93 -0.34 0.96 16 4 C -0.11 -1.55 4.89 -27.43 -0.13 -1.69 16 5 C -0.11 -1.45 5.85 -25.61 -0.15 -1.60 16 6 C -0.12 -1.62 5.32 -27.43 -0.15 -1.76 16 7 C -0.11 -1.54 5.61 -27.34 -0.15 -1.69 16 8 C -0.15 -2.60 4.15 -29.60 -0.12 -2.72 16 9 C 0.10 1.70 2.14 -70.58 -0.15 1.54 16 10 H 0.06 0.95 7.47 -51.93 -0.39 0.56 16 11 N -0.69 -14.53 5.23 -111.06 -0.58 -15.11 16 12 C 0.19 4.86 4.14 -4.98 -0.02 4.84 16 13 C -0.51 -14.49 9.32 -34.44 -0.32 -14.82 16 14 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 15 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 17 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 22 H 0.03 0.51 7.99 -51.93 -0.42 0.10 16 23 H 0.08 1.70 6.14 -51.93 -0.32 1.38 16 24 H 0.06 0.74 7.61 -51.93 -0.40 0.34 16 25 H 0.06 0.74 6.63 -51.93 -0.34 0.40 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.00 6.63 -51.93 -0.34 0.65 16 30 H 0.06 0.79 6.98 -51.93 -0.36 0.42 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 33 H 0.07 1.48 5.56 -51.93 -0.29 1.19 16 34 H 0.32 6.70 8.79 -39.29 -0.35 6.36 16 35 H 0.03 0.90 6.01 -51.93 -0.31 0.59 16 36 H -0.01 -0.30 6.27 -51.92 -0.33 -0.63 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 273.51 15.07 4.12 4.12 Total: -1.00 -28.78 273.51 -8.12 -36.90 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -6.26 Total: 3.17 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: -1.12 Total: -19.82 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 0.16 Total: -41.21 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.78 -8.12 -36.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083949054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.117 kcal (2) G-P(sol) polarization free energy of solvation -28.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds