Wall clock time and date at job start Mon Mar 30 2020 02:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.78379 * 2 1 4 4 C 1.50477 * 109.62686 * 120.49005 * 2 1 3 5 5 C 1.54068 * 112.49584 * 213.86034 * 4 2 1 6 6 C 1.54072 * 112.81699 * 318.28237 * 5 4 2 7 7 C 1.50475 * 112.49585 * 318.28640 * 6 5 4 8 8 C 1.54240 * 108.52447 * 94.14983 * 7 6 5 9 9 C 1.45538 * 112.40297 * 280.01329 * 8 7 6 10 10 H 1.09000 * 108.90026 * 301.17758 * 9 8 7 11 11 N 1.46906 * 108.89323 * 182.69248 * 9 8 7 12 12 C 1.46900 * 110.99931 * 302.54498 * 11 9 8 13 13 C 1.50695 * 109.47198 * 180.02562 * 12 11 9 14 14 H 1.07994 * 120.00014 * 359.97438 * 13 12 11 15 15 C 1.37883 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00132 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99695 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47466 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46866 * 120.00025 * 17 15 13 20 20 H 1.48497 * 109.47197 * 239.99821 * 17 15 13 21 21 H 1.09002 * 109.47735 * 175.30504 * 1 2 3 22 22 H 1.09004 * 109.47179 * 295.31381 * 1 2 3 23 23 H 1.08999 * 109.47171 * 55.30606 * 1 2 3 24 24 H 1.09001 * 108.87379 * 334.63817 * 4 2 1 25 25 H 1.08994 * 108.87734 * 93.08081 * 4 2 1 26 26 H 1.09004 * 108.80789 * 197.42532 * 5 4 2 27 27 H 1.08998 * 108.81306 * 79.14356 * 5 4 2 28 28 H 1.09000 * 108.87522 * 197.50748 * 6 5 4 29 29 H 1.08998 * 108.79466 * 79.00981 * 6 5 4 30 30 H 1.09004 * 109.62704 * 334.43483 * 7 6 5 31 31 H 1.09006 * 109.62541 * 213.86272 * 7 6 5 32 32 H 1.09003 * 108.89259 * 159.25910 * 8 7 6 33 33 H 1.08996 * 108.89336 * 40.76401 * 8 7 6 34 34 H 1.00900 * 110.99872 * 66.49988 * 11 9 8 35 35 H 1.09001 * 109.47116 * 300.00439 * 12 11 9 36 36 H 1.09011 * 109.46754 * 59.99936 * 12 11 9 37 37 H 0.97000 * 119.99757 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0354 -0.7191 1.2213 5 6 3.3468 -0.1160 1.7601 6 6 4.3396 0.2516 0.6407 7 6 4.4028 -0.7944 -0.4392 8 6 3.4276 -0.3954 -1.5656 9 6 2.0481 -0.7370 -1.2519 10 1 1.9803 -1.8116 -1.0823 11 7 1.1984 -0.3843 -2.3973 12 6 1.3267 1.0410 -2.7287 13 6 0.4423 1.3648 -3.9051 14 1 -0.1550 0.5892 -4.3612 15 6 0.3965 2.6510 -4.3998 16 7 1.1242 3.5953 -3.8447 17 14 -0.6993 3.0521 -5.8585 18 1 -1.4106 1.8241 -6.2959 19 1 -1.6915 4.0840 -5.4633 20 1 0.1325 3.5673 -6.9756 21 1 -0.3635 -1.0242 -0.0841 22 1 -0.3634 0.4394 0.9290 23 1 -0.3633 0.5849 -0.8449 24 1 1.2760 -0.6658 2.0015 25 1 2.2061 -1.7656 0.9690 26 1 3.8190 -0.8390 2.4253 27 1 3.1120 0.7825 2.3308 28 1 5.3322 0.3708 1.0748 29 1 4.0332 1.1988 0.1967 30 1 4.1126 -1.7619 -0.0293 31 1 5.4167 -0.8508 -0.8355 32 1 3.7186 -0.9082 -2.4824 33 1 3.4968 0.6802 -1.7278 34 1 1.4111 -0.9621 -3.1967 35 1 1.0245 1.6421 -1.8711 36 1 2.3636 1.2635 -2.9811 37 1 1.0916 4.5002 -4.1925 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083949054.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:57 Heat of formation + Delta-G solvation = -41.404066 kcal Electronic energy + Delta-G solvation = -14965.592024 eV Core-core repulsion = 12740.909594 eV Total energy + Delta-G solvation = -2224.682430 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68486 -36.44590 -34.59844 -34.14414 -31.43079 -28.89472 -27.72314 -24.81716 -24.04056 -23.74896 -20.75563 -19.82384 -18.70474 -16.84473 -16.48712 -16.16284 -15.52870 -15.39974 -14.85437 -14.58902 -14.36520 -13.91285 -13.60276 -13.17952 -13.08019 -12.87348 -12.72600 -12.50171 -12.31268 -12.08589 -11.71060 -11.49802 -11.39999 -11.22661 -11.18462 -11.06817 -10.88104 -10.62148 -8.94952 -8.20382 -6.30241 1.39081 1.39846 1.53496 2.40116 3.12590 3.63297 3.69293 3.90073 4.08301 4.26032 4.33739 4.34462 4.43348 4.52070 4.66322 4.85298 4.92806 4.94792 5.01935 5.09290 5.16752 5.22696 5.25750 5.28347 5.36302 5.40683 5.42575 5.45714 5.61488 5.63985 5.71672 5.77715 6.09346 6.55425 6.81384 6.97582 7.40296 8.90785 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044547 B = 0.007905 C = 0.007572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.405625 B = 3541.230932 C = 3696.915102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.035 0.965 4 C -0.107 4.107 5 C -0.112 4.112 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.147 4.147 9 C 0.094 3.906 10 H 0.083 0.917 11 N -0.685 5.685 12 C 0.214 3.786 13 C -0.534 4.534 14 H 0.060 0.940 15 C 0.000 4.000 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.264 1.264 19 H -0.279 1.279 20 H -0.278 1.278 21 H 0.057 0.943 22 H 0.048 0.952 23 H 0.035 0.965 24 H 0.069 0.931 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.031 0.969 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.329 0.671 35 H 0.004 0.996 36 H -0.039 1.039 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.581 -9.266 9.445 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.054 0.946 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.158 4.158 7 C -0.140 4.140 8 C -0.186 4.186 9 C -0.016 4.016 10 H 0.101 0.899 11 N -0.314 5.314 12 C 0.086 3.914 13 C -0.572 4.572 14 H 0.078 0.922 15 C -0.198 4.198 16 N -0.574 5.574 17 Si 0.793 3.207 18 H -0.188 1.188 19 H -0.205 1.205 20 H -0.204 1.204 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.054 0.946 24 H 0.087 0.913 25 H 0.089 0.911 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.145 0.855 35 H 0.022 0.978 36 H -0.021 1.021 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.034 -9.000 9.814 13.913 hybrid contribution 0.437 0.942 -1.437 1.773 sum 4.471 -8.058 8.377 12.453 Atomic orbital electron populations 1.21598 0.95019 1.01529 0.99911 1.20757 0.95899 0.98039 0.94451 0.94619 1.21365 0.97039 0.99885 0.96227 1.21889 0.94824 1.00930 0.97262 1.21344 0.99687 0.98149 0.96618 1.21212 0.98334 0.99667 0.94779 1.21262 0.97577 1.00520 0.99276 1.20536 0.89922 0.99354 0.91740 0.89917 1.60844 1.56283 1.05565 1.08674 1.19150 0.92689 0.85223 0.94325 1.21661 1.25609 0.94981 1.14946 0.92168 1.25913 0.97356 0.96197 1.00292 1.70103 1.42040 1.02227 1.43027 0.85350 0.78422 0.78305 0.78606 1.18760 1.20483 1.20397 0.92365 0.93294 0.94586 0.91263 0.91056 0.90180 0.92777 0.90971 0.95002 0.90023 0.91488 0.93281 0.94793 0.85487 0.97755 1.02104 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.39 8.33 71.98 0.60 -3.79 16 2 C -0.07 -2.47 1.43 -11.19 -0.02 -2.48 16 3 H 0.04 1.43 6.46 -2.39 -0.02 1.42 16 4 C -0.11 -2.69 4.89 30.14 0.15 -2.55 16 5 C -0.11 -2.53 5.85 31.32 0.18 -2.35 16 6 C -0.12 -3.10 5.32 30.14 0.16 -2.93 16 7 C -0.10 -2.62 5.61 30.20 0.17 -2.45 16 8 C -0.15 -5.06 4.15 28.74 0.12 -4.94 16 9 C 0.09 3.30 2.14 43.05 0.09 3.39 16 10 H 0.08 2.53 7.47 -2.39 -0.02 2.51 16 11 N -0.68 -29.68 5.23 -505.29 -2.64 -32.32 16 12 C 0.21 11.54 4.14 85.56 0.35 11.89 16 13 C -0.53 -31.06 9.32 25.60 0.24 -30.82 16 14 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 15 C 0.00 0.02 5.46 84.66 0.46 0.48 16 16 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 17 Si 0.97 45.32 29.54 68.60 2.03 47.34 16 18 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.05 1.53 7.99 -2.39 -0.02 1.51 16 23 H 0.03 1.58 6.14 -2.39 -0.01 1.56 16 24 H 0.07 1.59 7.61 -2.39 -0.02 1.57 16 25 H 0.07 1.60 6.63 -2.39 -0.02 1.58 16 26 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.03 1.01 6.63 -2.39 -0.02 1.00 16 30 H 0.08 1.80 6.98 -2.38 -0.02 1.78 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.03 1.43 5.56 -2.39 -0.01 1.42 16 34 H 0.33 13.70 8.79 -89.69 -0.79 12.91 16 35 H 0.00 0.26 6.01 -2.39 -0.01 0.25 16 36 H -0.04 -2.26 6.27 -2.38 -0.01 -2.28 16 37 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -63.95 273.51 2.43 -61.52 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: 0.25 Total: 17.21 kcal Atomic # 6 Polarization: -39.05 SS G_CDS: 2.51 Total: -36.54 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -2.36 Total: -89.53 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -63.95 2.43 -61.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083949054.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.117 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds