Wall clock time and date at job start Mon Mar 30 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.50474 * 2 1 4 4 C 1.53118 * 109.53513 * 239.89643 * 2 1 3 5 5 C 1.53123 * 109.15585 * 182.38720 * 4 2 1 6 6 C 1.53030 * 109.28009 * 57.65675 * 5 4 2 7 7 H 1.08998 * 109.46592 * 60.83401 * 6 5 4 8 8 C 1.52996 * 109.46276 * 180.80267 * 6 5 4 9 9 N 1.46846 * 109.52377 * 300.82027 * 6 5 4 10 10 C 1.46909 * 111.00162 * 185.84294 * 9 6 5 11 11 C 1.53002 * 109.46665 * 301.83101 * 10 9 6 12 12 C 1.50699 * 109.46938 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99932 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00300 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47086 * 59.99582 * 16 14 12 18 18 H 1.48497 * 109.47161 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47088 * 299.99805 * 16 14 12 20 20 C 1.46846 * 111.19997 * 61.74000 * 9 6 5 21 21 H 1.09002 * 109.47299 * 299.92647 * 1 2 3 22 22 H 1.09007 * 109.46923 * 59.92391 * 1 2 3 23 23 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52399 * 302.29103 * 4 2 1 25 25 H 1.08996 * 109.51997 * 62.48311 * 4 2 1 26 26 H 1.09003 * 109.49962 * 177.59579 * 5 4 2 27 27 H 1.09003 * 109.50448 * 297.71148 * 5 4 2 28 28 H 1.09010 * 109.47425 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47194 * 300.04941 * 8 6 5 30 30 H 1.09000 * 109.47617 * 60.05247 * 8 6 5 31 31 H 1.09000 * 109.47118 * 61.82904 * 10 9 6 32 32 H 1.08998 * 109.47002 * 181.83489 * 10 9 6 33 33 H 1.09001 * 109.47440 * 300.00246 * 11 10 9 34 34 H 1.09007 * 109.47189 * 60.00239 * 11 10 9 35 35 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.45759 * 58.27846 * 20 9 6 37 37 H 1.09003 * 109.46299 * 178.25316 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2484 5 6 3.5720 -0.7710 -1.2098 6 6 4.0237 -1.4716 0.0736 7 1 3.6388 -2.4913 0.0855 8 6 5.5524 -1.5033 0.1261 9 7 3.5091 -0.7408 1.2388 10 6 4.0370 -1.3040 2.4887 11 6 3.6556 -2.7827 2.5828 12 6 4.1965 -3.3604 3.8652 13 1 4.7568 -2.7355 4.5450 14 6 3.9772 -4.6870 4.1703 15 7 3.2954 -5.4481 3.3424 16 14 4.6484 -5.4032 5.7597 17 1 4.0727 -4.6693 6.9153 18 1 4.2781 -6.8383 5.8511 19 1 6.1273 -5.2711 5.7764 20 6 2.0408 -0.7229 1.2484 21 1 -0.3634 0.5127 0.8906 22 1 -0.3633 0.5150 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6466 -1.7393 -1.2686 25 1 1.7165 -0.1873 -2.1396 26 1 3.9410 -1.3225 -2.0746 27 1 3.9681 0.2443 -1.2289 28 1 5.8743 -2.0027 1.0400 29 1 5.9345 -2.0458 -0.7387 30 1 5.9377 -0.4838 0.1147 31 1 5.1227 -1.2074 2.5008 32 1 3.6147 -0.7652 3.3369 33 1 2.5699 -2.8795 2.5706 34 1 4.0779 -3.3216 1.7345 35 1 3.1408 -6.3813 3.5572 36 1 1.6653 -1.7461 1.2548 37 1 1.6898 -0.2016 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084047639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:38 Heat of formation + Delta-G solvation = -26.558986 kcal Electronic energy + Delta-G solvation = -14827.593764 eV Core-core repulsion = 12603.555065 eV Total energy + Delta-G solvation = -2224.038699 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.11178 -34.79826 -32.99904 -32.11805 -28.92636 -28.48839 -25.25397 -24.09281 -22.78976 -21.42465 -19.96631 -18.51559 -16.40248 -15.27327 -14.74363 -14.52299 -14.18217 -14.04547 -13.63747 -12.76204 -12.56755 -12.29681 -12.14745 -11.70401 -11.37836 -11.32704 -11.26780 -11.14729 -10.86855 -10.75029 -10.48889 -10.38276 -9.95830 -9.83376 -9.76398 -9.51282 -9.09456 -8.33657 -7.38193 -6.00289 -4.03120 3.32676 3.36994 3.39595 4.43951 4.59044 5.02775 5.17093 5.19015 5.34888 5.39090 5.68365 5.77478 5.84276 5.88685 5.98037 6.05285 6.07683 6.13258 6.21707 6.30575 6.34493 6.39161 6.41526 6.53087 6.62525 6.68256 6.70866 6.86075 7.00375 7.62520 7.64532 7.76872 7.95080 8.02968 8.44646 9.04124 9.60864 11.10643 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039193 B = 0.007897 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.232944 B = 3544.820043 C = 3847.340156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.115 4.115 5 C -0.110 4.110 6 C 0.079 3.921 7 H 0.049 0.951 8 C -0.146 4.146 9 N -0.538 5.538 10 C 0.054 3.946 11 C -0.008 4.008 12 C -0.519 4.519 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.060 3.940 21 H 0.053 0.947 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.015 0.985 34 H 0.019 0.981 35 H 0.260 0.740 36 H 0.040 0.960 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.870 9.107 -8.021 12.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.152 4.152 5 C -0.148 4.148 6 C -0.030 4.030 7 H 0.067 0.933 8 C -0.203 4.203 9 N -0.262 5.262 10 C -0.073 4.073 11 C -0.046 4.046 12 C -0.558 4.558 13 H 0.073 0.927 14 C -0.144 4.144 15 N -0.535 5.535 16 Si 0.719 3.281 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.202 1.202 20 C -0.069 4.069 21 H 0.072 0.928 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.764 9.415 -8.080 12.532 hybrid contribution 0.008 -1.446 1.002 1.759 sum -1.756 7.969 -7.078 10.803 Atomic orbital electron populations 1.21792 0.95583 1.01747 1.01184 1.21166 0.94590 0.99965 0.95036 0.90983 1.21626 0.95982 1.00383 0.97238 1.21626 0.95327 1.00930 0.96886 1.21530 0.95137 0.96034 0.90276 0.93336 1.21874 0.94882 1.01436 1.02108 1.62320 1.07065 1.53705 1.03098 1.22351 0.99325 0.96519 0.89078 1.19651 0.96866 0.90802 0.97293 1.21147 1.34418 0.95105 1.05160 0.92709 1.25020 0.95254 0.97254 0.96835 1.69958 1.40373 1.06741 1.36383 0.86667 0.79454 0.77973 0.83968 1.20249 1.21322 1.20217 1.22055 0.88612 0.99208 0.96976 0.92776 0.93017 0.92751 0.92305 0.92545 0.92268 0.91728 0.91357 0.93153 0.92727 0.91610 0.92365 0.96712 0.96226 0.93005 0.94172 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.20 37.16 0.34 -1.44 16 2 C -0.09 -1.26 2.88 -90.54 -0.26 -1.52 16 3 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.58 5.29 -26.61 -0.14 -1.72 16 5 C -0.11 -1.59 5.37 -26.65 -0.14 -1.73 16 6 C 0.08 1.39 1.84 -67.73 -0.12 1.27 16 7 H 0.05 1.00 6.61 -51.93 -0.34 0.66 16 8 C -0.15 -2.42 8.68 37.16 0.32 -2.10 16 9 N -0.54 -10.07 4.69 -226.69 -1.06 -11.13 16 10 C 0.05 1.16 4.73 -3.82 -0.02 1.14 16 11 C -0.01 -0.21 4.17 -27.88 -0.12 -0.32 16 12 C -0.52 -14.81 9.11 -34.44 -0.31 -15.12 16 13 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.06 1.05 4.33 -3.84 -0.02 1.04 16 21 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.07 1.28 6.07 -51.92 -0.32 0.97 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.07 1.40 6.32 -51.93 -0.33 1.07 16 32 H 0.06 1.25 8.06 -51.93 -0.42 0.83 16 33 H 0.01 0.41 6.68 -51.93 -0.35 0.06 16 34 H 0.02 0.54 6.24 -51.92 -0.32 0.22 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.80 6.75 -51.93 -0.35 0.45 16 37 H 0.07 1.16 8.06 -51.93 -0.42 0.74 16 LS Contribution 282.18 15.07 4.25 4.25 Total: -1.00 -29.49 282.18 -8.28 -37.77 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.61 Total: -2.39 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -0.57 Total: -18.94 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.33 Total: -37.51 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.49 -8.28 -37.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.209 kcal (2) G-P(sol) polarization free energy of solvation -29.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds