Wall clock time and date at job start Mon Mar 30 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.50474 * 2 1 4 4 C 1.53118 * 109.53513 * 239.89643 * 2 1 3 5 5 C 1.53123 * 109.15585 * 182.38720 * 4 2 1 6 6 C 1.53030 * 109.28009 * 57.65675 * 5 4 2 7 7 H 1.08998 * 109.46592 * 60.83401 * 6 5 4 8 8 C 1.52996 * 109.46276 * 180.80267 * 6 5 4 9 9 N 1.46846 * 109.52377 * 300.82027 * 6 5 4 10 10 C 1.46909 * 111.00162 * 185.84294 * 9 6 5 11 11 C 1.53002 * 109.46665 * 301.83101 * 10 9 6 12 12 C 1.50699 * 109.46938 * 180.02562 * 11 10 9 13 13 H 1.08001 * 120.00092 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99932 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00300 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99975 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47086 * 59.99582 * 16 14 12 18 18 H 1.48497 * 109.47161 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47088 * 299.99805 * 16 14 12 20 20 C 1.46846 * 111.19997 * 61.74000 * 9 6 5 21 21 H 1.09002 * 109.47299 * 299.92647 * 1 2 3 22 22 H 1.09007 * 109.46923 * 59.92391 * 1 2 3 23 23 H 1.09000 * 109.47310 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.52399 * 302.29103 * 4 2 1 25 25 H 1.08996 * 109.51997 * 62.48311 * 4 2 1 26 26 H 1.09003 * 109.49962 * 177.59579 * 5 4 2 27 27 H 1.09003 * 109.50448 * 297.71148 * 5 4 2 28 28 H 1.09010 * 109.47425 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47194 * 300.04941 * 8 6 5 30 30 H 1.09000 * 109.47617 * 60.05247 * 8 6 5 31 31 H 1.09000 * 109.47118 * 61.82904 * 10 9 6 32 32 H 1.08998 * 109.47002 * 181.83489 * 10 9 6 33 33 H 1.09001 * 109.47440 * 300.00246 * 11 10 9 34 34 H 1.09007 * 109.47189 * 60.00239 * 11 10 9 35 35 H 0.96998 * 120.00122 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.45759 * 58.27846 * 20 9 6 37 37 H 1.09003 * 109.46299 * 178.25316 * 20 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0420 -0.7238 -1.2484 5 6 3.5720 -0.7710 -1.2098 6 6 4.0237 -1.4716 0.0736 7 1 3.6388 -2.4913 0.0855 8 6 5.5524 -1.5033 0.1261 9 7 3.5091 -0.7408 1.2388 10 6 4.0370 -1.3040 2.4887 11 6 3.6556 -2.7827 2.5828 12 6 4.1965 -3.3604 3.8652 13 1 4.7568 -2.7355 4.5450 14 6 3.9772 -4.6870 4.1703 15 7 3.2954 -5.4481 3.3424 16 14 4.6484 -5.4032 5.7597 17 1 4.0727 -4.6693 6.9153 18 1 4.2781 -6.8383 5.8511 19 1 6.1273 -5.2711 5.7764 20 6 2.0408 -0.7229 1.2484 21 1 -0.3634 0.5127 0.8906 22 1 -0.3633 0.5150 -0.8894 23 1 -0.3634 -1.0277 -0.0005 24 1 1.6466 -1.7393 -1.2686 25 1 1.7165 -0.1873 -2.1396 26 1 3.9410 -1.3225 -2.0746 27 1 3.9681 0.2443 -1.2289 28 1 5.8743 -2.0027 1.0400 29 1 5.9345 -2.0458 -0.7387 30 1 5.9377 -0.4838 0.1147 31 1 5.1227 -1.2074 2.5008 32 1 3.6147 -0.7652 3.3369 33 1 2.5699 -2.8795 2.5706 34 1 4.0779 -3.3216 1.7345 35 1 3.1408 -6.3813 3.5572 36 1 1.6653 -1.7461 1.2548 37 1 1.6898 -0.2016 2.1390 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084047639.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:37 Heat of formation + Delta-G solvation = -44.600542 kcal Electronic energy + Delta-G solvation = -14828.376104 eV Core-core repulsion = 12603.555065 eV Total energy + Delta-G solvation = -2224.821039 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.54246 -36.33162 -34.84710 -33.70203 -30.84450 -29.69340 -27.03656 -25.51185 -24.43269 -23.02923 -21.27859 -20.04284 -18.57794 -16.72394 -16.58719 -16.21751 -15.61182 -15.35747 -15.07165 -14.33720 -14.07033 -13.97704 -13.55684 -13.28102 -12.98747 -12.80652 -12.72051 -12.59268 -12.51146 -12.44825 -11.97591 -11.85071 -11.61436 -11.45304 -11.29918 -11.12189 -10.90277 -10.56331 -9.06816 -8.22829 -6.35614 1.36636 1.39975 1.47913 2.37498 3.09066 3.09536 3.83420 3.96625 3.98778 4.11112 4.41089 4.48343 4.49815 4.62369 4.70841 4.73026 4.80298 4.83824 4.91392 4.94092 5.00134 5.03293 5.13025 5.14233 5.26908 5.28859 5.31609 5.40473 5.48452 5.59376 5.60303 5.76808 6.05270 6.34324 6.36827 6.82148 7.33769 8.87821 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.039193 B = 0.007897 C = 0.007276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.232944 B = 3544.820043 C = 3847.340156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 H 0.085 0.915 4 C -0.114 4.114 5 C -0.103 4.103 6 C 0.074 3.926 7 H 0.008 0.992 8 C -0.140 4.140 9 N -0.528 5.528 10 C 0.067 3.933 11 C 0.007 3.993 12 C -0.544 4.544 13 H 0.061 0.939 14 C 0.000 4.000 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.266 1.266 18 H -0.283 1.283 19 H -0.265 1.265 20 C 0.058 3.942 21 H 0.058 0.942 22 H 0.076 0.924 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.058 0.942 33 H -0.017 1.017 34 H -0.007 1.007 35 H 0.263 0.737 36 H 0.004 0.996 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.425 10.582 -8.424 13.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.101 4.101 3 H 0.103 0.897 4 C -0.152 4.152 5 C -0.141 4.141 6 C -0.035 4.035 7 H 0.026 0.974 8 C -0.198 4.198 9 N -0.251 5.251 10 C -0.060 4.060 11 C -0.031 4.031 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.198 4.198 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.191 1.191 18 H -0.208 1.208 19 H -0.190 1.190 20 C -0.070 4.070 21 H 0.077 0.923 22 H 0.095 0.905 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.106 0.894 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.001 0.999 34 H 0.012 0.988 35 H 0.072 0.928 36 H 0.023 0.977 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.319 10.910 -8.491 13.888 hybrid contribution -0.152 -1.921 1.097 2.217 sum -1.470 8.989 -7.394 11.732 Atomic orbital electron populations 1.21769 0.93996 1.01464 1.02699 1.21150 0.95899 0.99862 0.93160 0.89711 1.21655 0.95430 0.99881 0.98233 1.21604 0.95908 1.01404 0.95152 1.21652 0.95876 0.94307 0.91617 0.97433 1.21828 0.94041 1.02445 1.01453 1.62417 1.07740 1.52692 1.02260 1.22115 0.99671 0.93413 0.90833 1.19458 0.94372 0.93689 0.95622 1.21610 1.34674 0.95826 1.06122 0.92048 1.26000 0.95358 0.97698 1.00698 1.70107 1.41569 1.07120 1.38555 0.85493 0.79173 0.77123 0.79236 1.19124 1.20835 1.18987 1.22149 0.87862 0.97725 0.99299 0.92316 0.90457 0.93961 0.93967 0.89353 0.90558 0.90199 0.94306 0.91333 0.90842 0.91136 0.92341 0.99914 0.98831 0.92844 0.97740 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.20 71.98 0.66 -2.56 16 2 C -0.08 -2.20 2.88 -10.74 -0.03 -2.23 16 3 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 4 C -0.11 -2.92 5.29 30.67 0.16 -2.76 16 5 C -0.10 -2.76 5.37 30.65 0.16 -2.60 16 6 C 0.07 2.63 1.84 44.93 0.08 2.71 16 7 H 0.01 0.33 6.61 -2.39 -0.02 0.32 16 8 C -0.14 -4.59 8.68 71.98 0.63 -3.97 16 9 N -0.53 -19.90 4.69 -871.12 -4.09 -23.99 16 10 C 0.07 2.97 4.73 86.30 0.41 3.38 16 11 C 0.01 0.38 4.17 29.85 0.12 0.50 16 12 C -0.54 -31.79 9.11 25.60 0.23 -31.55 16 13 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 14 C 0.00 0.02 5.46 84.65 0.46 0.48 16 15 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 16 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 18 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 20 C 0.06 2.08 4.33 86.33 0.37 2.45 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.04 1.48 6.07 -2.38 -0.01 1.46 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.07 3.03 6.32 -2.39 -0.02 3.02 16 32 H 0.06 2.55 8.06 -2.39 -0.02 2.53 16 33 H -0.02 -1.05 6.68 -2.39 -0.02 -1.07 16 34 H -0.01 -0.39 6.24 -2.38 -0.01 -0.41 16 35 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 36 H 0.00 0.18 6.75 -2.39 -0.02 0.17 16 37 H 0.07 2.32 8.06 -2.39 -0.02 2.30 16 Total: -1.00 -65.20 282.18 2.49 -62.71 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: 1.00 Total: 8.29 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.27 Total: -36.15 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -3.80 Total: -81.94 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -65.20 2.49 -62.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047639.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.108 kcal (2) G-P(sol) polarization free energy of solvation -65.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds