Wall clock time and date at job start Mon Mar 30 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.45949 * 2 1 4 4 C 1.53036 * 109.45558 * 240.02371 * 2 1 3 5 5 C 1.53118 * 109.28007 * 299.17106 * 4 2 1 6 6 C 1.53123 * 109.15585 * 302.34276 * 5 4 2 7 7 H 1.09003 * 109.50448 * 297.71148 * 6 5 4 8 8 C 1.53005 * 109.49984 * 177.59503 * 6 5 4 9 9 C 1.53030 * 109.28009 * 57.65675 * 6 5 4 10 10 N 1.46846 * 109.46228 * 119.97704 * 2 1 3 11 11 C 1.46909 * 111.00243 * 294.16452 * 10 2 1 12 12 C 1.52999 * 109.47025 * 170.00251 * 11 10 2 13 13 C 1.50706 * 109.46778 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99657 * 359.97438 * 13 12 11 15 15 C 1.37871 * 119.99650 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99603 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00457 * 359.97438 * 15 13 12 18 18 H 1.48500 * 109.47240 * 89.99629 * 17 15 13 19 19 H 1.48499 * 109.47119 * 210.00064 * 17 15 13 20 20 H 1.48505 * 109.46962 * 330.00157 * 17 15 13 21 21 H 1.09006 * 109.47181 * 300.02239 * 1 2 3 22 22 H 1.08992 * 109.47535 * 60.02277 * 1 2 3 23 23 H 1.09003 * 109.46894 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.49869 * 59.10696 * 4 2 1 25 25 H 1.09000 * 109.50168 * 179.22564 * 4 2 1 26 26 H 1.08993 * 109.52399 * 62.24659 * 5 4 2 27 27 H 1.08996 * 109.51997 * 182.43867 * 5 4 2 28 28 H 1.09007 * 109.46955 * 59.99941 * 8 6 5 29 29 H 1.09002 * 109.46994 * 179.97438 * 8 6 5 30 30 H 1.08996 * 109.47470 * 300.00106 * 8 6 5 31 31 H 1.08999 * 109.46586 * 180.80053 * 9 6 5 32 32 H 1.08998 * 109.46592 * 60.83401 * 9 6 5 33 33 H 1.09000 * 109.47285 * 290.00268 * 11 10 2 34 34 H 1.09003 * 109.46644 * 50.00315 * 11 10 2 35 35 H 1.09000 * 109.47102 * 300.00128 * 12 11 10 36 36 H 1.08999 * 109.47491 * 59.99991 * 12 11 10 37 37 H 0.97004 * 119.99648 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0397 -0.7210 -1.2500 5 6 1.5439 -2.1696 -1.2356 6 6 2.0266 -2.8532 0.0467 7 1 3.1163 -2.8752 0.0593 8 6 1.4853 -4.2834 0.0979 9 6 1.5172 -2.0705 1.2591 10 7 2.0192 -0.6918 1.1993 11 6 1.6653 0.0506 2.4166 12 6 1.9654 -0.8110 3.6448 13 6 1.6018 -0.0496 4.8935 14 1 1.1975 0.9491 4.8185 15 6 1.7852 -0.6280 6.1315 16 7 1.4683 0.0367 7.2212 17 14 2.4838 -2.3556 6.2612 18 1 3.9645 -2.2854 6.3502 19 1 1.9456 -3.0172 7.4768 20 1 2.0967 -3.1375 5.0595 21 1 -0.3634 0.5142 0.8898 22 1 -0.3634 0.5134 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6634 -0.2164 -2.1399 25 1 3.1296 -0.7094 -1.2577 26 1 0.4545 -2.1820 -1.2671 27 1 1.9403 -2.6988 -2.1020 28 1 1.8455 -4.8394 -0.7677 29 1 1.8295 -4.7697 1.0107 30 1 0.3956 -4.2601 0.0870 31 1 1.8711 -2.5465 2.1735 32 1 0.4273 -2.0606 1.2533 33 1 2.2505 0.9689 2.4652 34 1 0.6037 0.2969 2.3962 35 1 1.3802 -1.7293 3.5962 36 1 3.0270 -1.0574 3.6653 37 1 1.5970 -0.3704 8.0923 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084047642.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:41 Heat of formation + Delta-G solvation = -16.927259 kcal Electronic energy + Delta-G solvation = -14851.048742 eV Core-core repulsion = 12627.427706 eV Total energy + Delta-G solvation = -2223.621036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52396 -34.71226 -33.24751 -32.15911 -29.49744 -28.08511 -25.97466 -24.73967 -23.00438 -21.00024 -19.90201 -18.30488 -16.93742 -15.59591 -14.94863 -14.61974 -14.11798 -13.97193 -13.80422 -13.06175 -12.77908 -12.68799 -12.52177 -12.03195 -11.80625 -11.74055 -11.33709 -11.25012 -10.95102 -10.72388 -10.32721 -10.21756 -10.08323 -9.92177 -9.71037 -9.56398 -9.10460 -8.51658 -7.66249 -6.03290 -4.01090 3.32703 3.39486 3.43135 4.40172 4.46640 4.86875 5.00417 5.04120 5.24970 5.31280 5.42983 5.56837 5.65186 5.67528 5.77589 5.83430 5.90953 5.95670 6.01516 6.06818 6.12036 6.23503 6.26922 6.29260 6.36299 6.49425 6.55203 6.69604 6.80830 7.20823 7.39190 7.63818 7.74294 7.89657 8.55011 9.01154 9.59288 11.10188 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037231 B = 0.008790 C = 0.007529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.886855 B = 3184.564999 C = 3717.882822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.079 3.921 3 H 0.077 0.923 4 C -0.109 4.109 5 C -0.115 4.115 6 C -0.091 4.091 7 H 0.075 0.925 8 C -0.146 4.146 9 C 0.051 3.949 10 N -0.536 5.536 11 C 0.067 3.933 12 C -0.014 4.014 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.904 5.904 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.266 1.266 21 H 0.060 0.940 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.084 0.916 32 H 0.033 0.967 33 H 0.066 0.934 34 H 0.030 0.970 35 H 0.018 0.982 36 H 0.019 0.981 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 -5.260 -16.471 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.030 4.030 3 H 0.095 0.905 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.110 4.110 7 H 0.093 0.907 8 C -0.203 4.203 9 C -0.076 4.076 10 N -0.259 5.259 11 C -0.059 4.059 12 C -0.051 4.051 13 C -0.558 4.558 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.543 5.543 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.191 1.191 21 H 0.079 0.921 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.049 0.951 35 H 0.036 0.964 36 H 0.038 0.962 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.239 -5.281 -16.295 17.131 hybrid contribution -0.579 -0.761 0.347 1.017 sum -0.340 -6.042 -15.948 17.058 Atomic orbital electron populations 1.22507 0.98223 1.02186 1.01873 1.21622 0.92446 0.97974 0.90950 0.90496 1.21573 1.01196 0.95400 0.96541 1.21654 1.00509 0.95755 0.97289 1.21192 1.00967 0.94063 0.94750 0.90669 1.21793 1.00865 0.96182 1.01507 1.22250 0.97350 0.89665 0.98375 1.62252 1.59179 1.02035 1.02478 1.22154 0.98161 0.97340 0.88291 1.19711 0.96760 0.95704 0.92955 1.21093 1.42683 1.02887 0.89173 0.91114 1.25000 0.95007 0.97673 0.95720 1.69920 1.48855 1.37757 0.97786 0.86761 0.79632 0.85223 0.77563 1.20215 1.21476 1.19051 0.92098 0.92806 0.92150 0.92190 0.91406 0.92228 0.92515 0.92917 0.92558 0.92977 0.89777 0.94899 0.91522 0.95134 0.96389 0.96248 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.20 37.16 0.30 -2.32 16 2 C 0.08 1.16 2.93 -67.72 -0.20 0.96 16 3 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 4 C -0.11 -1.34 5.61 -26.65 -0.15 -1.49 16 5 C -0.11 -1.36 4.98 -26.61 -0.13 -1.49 16 6 C -0.09 -1.23 2.88 -90.54 -0.26 -1.49 16 7 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 8 C -0.15 -1.72 9.20 37.16 0.34 -1.38 16 9 C 0.05 0.86 3.84 -3.84 -0.01 0.85 16 10 N -0.54 -9.50 4.75 -226.69 -1.08 -10.57 16 11 C 0.07 1.40 5.09 -3.82 -0.02 1.38 16 12 C -0.01 -0.34 3.29 -27.88 -0.09 -0.43 16 13 C -0.52 -15.06 9.66 -34.44 -0.33 -15.39 16 14 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -28.21 13.96 55.43 0.77 -27.44 16 17 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 21 H 0.06 0.93 6.36 -51.93 -0.33 0.60 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.06 0.84 4.80 -51.93 -0.25 0.59 16 24 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.70 6.56 -51.93 -0.34 0.36 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 1.59 5.81 -51.93 -0.30 1.29 16 32 H 0.03 0.56 6.19 -51.93 -0.32 0.24 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.03 0.64 6.07 -51.93 -0.32 0.33 16 35 H 0.02 0.44 5.26 -51.93 -0.27 0.17 16 36 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -30.09 274.40 -7.83 -37.92 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -6.34 Total: -2.54 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -0.65 Total: -18.93 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.30 Total: -38.01 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -30.09 -7.83 -37.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047642.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.990 kcal (2) G-P(sol) polarization free energy of solvation -30.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds