Wall clock time and date at job start Mon Mar 30 2020 03:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46361 * 2 1 4 4 C 1.50693 * 109.47177 * 119.99898 * 2 1 3 5 5 H 1.08005 * 119.99764 * 114.70834 * 4 2 1 6 6 C 1.37876 * 120.00407 * 294.70338 * 4 2 1 7 7 N 1.31516 * 119.99814 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00309 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46868 * 60.00624 * 8 6 4 10 10 H 1.48497 * 109.47466 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47347 * 300.00848 * 8 6 4 12 12 N 1.46894 * 109.47008 * 240.00291 * 2 1 3 13 13 C 1.46846 * 110.99838 * 177.72208 * 12 2 1 14 14 C 1.53037 * 109.51597 * 174.16353 * 13 12 2 15 15 H 1.09006 * 109.50707 * 299.23810 * 14 13 12 16 16 C 1.52998 * 109.50828 * 179.12057 * 14 13 12 17 17 C 1.53104 * 109.28816 * 59.18949 * 14 13 12 18 18 C 1.53113 * 109.15286 * 302.33950 * 17 14 13 19 19 C 1.46849 * 111.00394 * 53.51918 * 12 2 1 20 20 H 1.09003 * 109.45748 * 305.85726 * 19 12 2 21 21 C 1.53001 * 109.46312 * 65.81901 * 19 12 2 22 22 H 1.08999 * 109.46994 * 299.99671 * 1 2 3 23 23 H 1.08997 * 109.46961 * 60.00015 * 1 2 3 24 24 H 1.09004 * 109.46675 * 179.97438 * 1 2 3 25 25 H 0.96993 * 120.00221 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.47067 * 294.17767 * 13 12 2 27 27 H 1.09004 * 109.46044 * 54.16132 * 13 12 2 28 28 H 1.08998 * 109.47031 * 59.99429 * 16 14 13 29 29 H 1.08997 * 109.47548 * 180.02562 * 16 14 13 30 30 H 1.09002 * 109.46929 * 300.00499 * 16 14 13 31 31 H 1.08996 * 109.52275 * 182.43423 * 17 14 13 32 32 H 1.08992 * 109.52074 * 62.24389 * 17 14 13 33 33 H 1.09007 * 109.50453 * 297.71353 * 18 17 14 34 34 H 1.09004 * 109.53586 * 177.61747 * 18 17 14 35 35 H 1.08997 * 109.46957 * 64.23970 * 21 19 12 36 36 H 1.09000 * 109.46852 * 184.24192 * 21 19 12 37 37 H 1.08998 * 109.47162 * 304.23829 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5810 -1.6356 1.1336 6 6 1.7918 -0.1791 2.4798 7 7 1.1234 0.9474 2.5977 8 14 2.4138 -1.0601 4.0050 9 1 3.8932 -1.1734 3.9423 10 1 2.0268 -0.2897 5.2141 11 1 1.8158 -2.4177 4.0711 12 7 2.0197 -0.6924 -1.1994 13 6 3.4866 -0.6650 -1.2609 14 6 3.9649 -1.5162 -2.4393 15 1 3.6382 -2.5468 -2.3002 16 6 5.4923 -1.4698 -2.5164 17 6 3.3709 -0.9624 -3.7372 18 6 1.8437 -0.9567 -3.6284 19 6 1.4267 -0.1217 -2.4156 20 1 0.3403 -0.1273 -2.3269 21 6 1.9158 1.3169 -2.5946 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 0.9537 1.3209 3.4766 26 1 3.8255 0.3623 -1.3938 27 1 3.8965 -1.0655 -0.3337 28 1 5.9148 -1.8608 -1.5909 29 1 5.8323 -2.0758 -3.3561 30 1 5.8178 -0.4391 -2.6573 31 1 3.6742 -1.5915 -4.5741 32 1 3.7286 0.0547 -3.8966 33 1 1.4835 -1.9784 -3.5079 34 1 1.4154 -0.5241 -4.5327 35 1 2.9935 1.3165 -2.7580 36 1 1.4181 1.7655 -3.4543 37 1 1.6843 1.8935 -1.6990 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084047668.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:44 Heat of formation + Delta-G solvation = -30.765113 kcal Electronic energy + Delta-G solvation = -15236.651137 eV Core-core repulsion = 13012.430047 eV Total energy + Delta-G solvation = -2224.221090 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.63347 -36.38690 -34.50097 -33.14198 -30.52039 -29.19802 -27.33446 -26.16382 -24.64443 -22.82657 -21.10249 -19.25022 -18.35907 -17.35399 -16.32442 -15.85103 -15.69298 -14.87918 -14.73981 -14.34629 -14.09678 -13.72046 -13.46536 -13.01844 -12.95001 -12.86057 -12.78688 -12.58069 -12.48370 -12.14698 -11.99374 -11.85990 -11.67217 -11.35018 -11.14693 -10.76946 -10.71774 -10.47111 -8.76659 -8.11073 -6.21280 1.40497 1.42388 1.49934 2.42224 3.18189 3.39307 3.91684 4.04732 4.10500 4.27731 4.45660 4.54689 4.64186 4.73528 4.76898 4.81675 4.88651 4.97823 4.99233 5.04138 5.06702 5.08594 5.16066 5.18181 5.33919 5.37842 5.41762 5.50727 5.55912 5.67135 5.77856 5.84050 6.28762 6.51184 6.87390 6.96572 7.47796 8.95774 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034645 B = 0.010477 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.996246 B = 2671.829327 C = 3203.496153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.218 3.782 3 H -0.031 1.031 4 C -0.516 4.516 5 H 0.053 0.947 6 C 0.010 3.990 7 N -0.923 5.923 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.272 1.272 12 N -0.536 5.536 13 C 0.072 3.928 14 C -0.087 4.087 15 H 0.065 0.935 16 C -0.139 4.139 17 C -0.108 4.108 18 C -0.103 4.103 19 C 0.067 3.933 20 H 0.071 0.929 21 C -0.177 4.177 22 H 0.048 0.952 23 H 0.033 0.967 24 H 0.032 0.968 25 H 0.261 0.739 26 H 0.012 0.988 27 H 0.049 0.951 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.329 -2.886 -11.802 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.111 3.889 3 H -0.014 1.014 4 C -0.554 4.554 5 H 0.071 0.929 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.197 1.197 12 N -0.260 5.260 13 C -0.056 4.056 14 C -0.105 4.105 15 H 0.083 0.917 16 C -0.196 4.196 17 C -0.145 4.145 18 C -0.141 4.141 19 C -0.042 4.042 20 H 0.089 0.911 21 C -0.235 4.235 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.051 0.949 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.109 -3.255 -11.625 12.752 hybrid contribution 0.286 0.805 1.365 1.610 sum 4.395 -2.450 -10.260 11.427 Atomic orbital electron populations 1.21655 0.97792 0.99009 0.99212 1.18970 0.92080 0.90541 0.87321 1.01362 1.21369 1.34668 1.08013 0.91354 0.92880 1.25707 0.95590 0.95706 1.01838 1.70043 1.41581 1.20451 1.24188 0.85633 0.78806 0.78647 0.78683 1.19743 1.20936 1.19708 1.62161 1.06564 1.55219 1.02009 1.21928 0.88365 0.97026 0.98304 1.21169 0.95851 0.99199 0.94327 0.91668 1.21741 0.93998 1.01901 1.01993 1.21628 0.94955 1.01170 0.96794 1.21553 0.96446 0.99873 0.96214 1.21843 0.99034 0.92276 0.91024 0.91127 1.22389 1.01878 0.98279 1.00977 0.93353 0.94770 0.94927 0.93039 0.97005 0.93216 0.93327 0.90678 0.92900 0.90058 0.92046 0.91984 0.89918 0.92209 0.90732 0.95467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.58 71.98 0.62 -5.33 16 2 C 0.22 11.40 1.53 44.17 0.07 11.47 16 3 H -0.03 -1.82 6.69 -2.39 -0.02 -1.84 16 4 C -0.52 -29.29 7.67 25.60 0.20 -29.10 16 5 H 0.05 3.03 7.09 -2.91 -0.02 3.01 16 6 C 0.01 0.56 5.32 84.65 0.45 1.01 16 7 N -0.92 -54.63 11.72 21.45 0.25 -54.38 16 8 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 N -0.54 -23.39 4.46 -850.41 -3.80 -27.19 16 13 C 0.07 2.89 4.27 86.33 0.37 3.26 16 14 C -0.09 -2.62 2.88 -10.75 -0.03 -2.66 16 15 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 16 C -0.14 -3.45 9.20 71.98 0.66 -2.79 16 17 C -0.11 -2.76 4.98 30.67 0.15 -2.60 16 18 C -0.10 -2.86 5.61 30.64 0.17 -2.69 16 19 C 0.07 2.40 2.54 44.94 0.11 2.51 16 20 H 0.07 2.64 5.86 -2.39 -0.01 2.62 16 21 C -0.18 -6.04 8.25 71.98 0.59 -5.44 16 22 H 0.05 2.66 6.50 -2.39 -0.02 2.65 16 23 H 0.03 1.51 6.20 -2.39 -0.01 1.49 16 24 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 25 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 26 H 0.01 0.49 6.29 -2.39 -0.02 0.48 16 27 H 0.05 2.26 6.56 -2.39 -0.02 2.24 16 28 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.06 1.54 6.46 -2.39 -0.02 1.53 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.85 16 35 H 0.06 1.97 4.82 -2.39 -0.01 1.96 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.03 1.09 6.49 -2.39 -0.02 1.07 16 Total: -1.00 -61.59 272.43 2.87 -58.72 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: 1.02 Total: 8.35 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: 3.36 Total: -32.35 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -3.54 Total: -81.57 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -61.59 2.87 -58.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084047668.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.960 kcal (2) G-P(sol) polarization free energy of solvation -61.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds