Wall clock time and date at job start Mon Mar 30 2020 03:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46864 * 2 1 4 4 N 1.46497 * 109.47098 * 120.00023 * 2 1 3 5 5 C 1.36934 * 120.00009 * 275.00114 * 4 2 1 6 6 H 1.07994 * 120.00485 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00354 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99775 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47055 * 89.99833 * 9 7 5 11 11 H 1.48493 * 109.47083 * 210.00169 * 9 7 5 12 12 H 1.48503 * 109.46785 * 330.00329 * 9 7 5 13 13 C 1.52995 * 109.46847 * 240.00224 * 2 1 3 14 14 C 1.50475 * 108.87461 * 179.22312 * 13 2 1 15 15 C 1.54236 * 108.52263 * 214.93096 * 14 13 2 16 16 C 1.45548 * 112.40650 * 280.00764 * 15 14 13 17 17 C 1.54242 * 112.32667 * 61.98543 * 16 15 14 18 18 C 1.50552 * 108.47856 * 279.87890 * 17 16 15 19 19 C 1.54060 * 108.88031 * 302.19697 * 13 2 1 20 20 H 1.09003 * 109.47180 * 305.79939 * 1 2 3 21 21 H 1.09004 * 109.47448 * 65.79757 * 1 2 3 22 22 H 1.09003 * 109.47498 * 185.79820 * 1 2 3 23 23 H 0.96998 * 120.00172 * 95.00144 * 4 2 1 24 24 H 0.96997 * 120.00371 * 179.97438 * 8 7 5 25 25 H 1.09000 * 108.85909 * 60.66812 * 13 2 1 26 26 H 1.09005 * 109.62831 * 95.21963 * 14 13 2 27 27 H 1.08999 * 109.63153 * 334.64379 * 14 13 2 28 28 H 1.09000 * 108.89933 * 159.25812 * 15 14 13 29 29 H 1.09000 * 108.89849 * 40.75881 * 15 14 13 30 30 H 1.08999 * 108.89495 * 182.68567 * 16 15 14 31 31 H 1.08994 * 108.89478 * 301.27403 * 16 15 14 32 32 H 1.08995 * 109.62936 * 39.67969 * 17 16 15 33 33 H 1.08993 * 109.62884 * 160.25783 * 17 16 15 34 34 H 1.08993 * 108.92860 * 333.51507 * 18 17 16 35 35 H 1.09000 * 108.91827 * 215.01439 * 18 17 16 36 36 H 1.09007 * 108.81545 * 318.37196 * 19 13 2 37 37 H 1.09002 * 108.81208 * 76.64939 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6617 3.5090 8 7 2.7385 -0.0051 4.6427 9 14 3.0566 -2.4743 3.4251 10 1 4.4892 -2.6164 3.0606 11 1 2.8176 -3.1043 4.7484 12 1 2.2162 -3.1429 2.3994 13 6 2.0399 -0.7212 -1.2492 14 6 3.5445 -0.6967 -1.2454 15 6 4.0361 -0.5694 -2.7018 16 6 4.0132 -1.8417 -3.4083 17 6 2.5893 -2.4241 -3.5202 18 6 2.2424 -3.0905 -2.2156 19 6 1.4738 -2.1539 -1.2638 20 1 -0.3634 0.6011 0.8335 21 1 -0.3634 0.4213 -0.9374 22 1 -0.3634 -1.0224 0.1038 23 1 2.2490 -1.6317 1.1526 24 1 3.0618 -0.4623 5.4346 25 1 1.6809 -0.1927 -2.1324 26 1 3.9246 -1.6209 -0.8100 27 1 3.8954 0.1563 -0.6646 28 1 5.0566 -0.1864 -2.6977 29 1 3.3973 0.1388 -3.2294 30 1 4.4147 -1.6959 -4.4111 31 1 4.6446 -2.5527 -2.8756 32 1 1.8804 -1.6216 -3.7234 33 1 2.5562 -3.1581 -4.3253 34 1 3.1622 -3.4120 -1.7272 35 1 1.6282 -3.9677 -2.4191 36 1 1.5228 -2.5616 -0.2540 37 1 0.4298 -2.1162 -1.5749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088169260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:41 Heat of formation + Delta-G solvation = -16.036405 kcal Electronic energy + Delta-G solvation = -15043.800782 eV Core-core repulsion = 12820.218377 eV Total energy + Delta-G solvation = -2223.582405 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.14588 -35.67082 -32.52558 -32.02752 -30.38135 -28.66128 -24.96716 -24.15939 -23.12318 -20.67331 -20.29903 -18.19877 -17.66460 -15.49494 -14.89965 -14.66851 -14.06482 -13.81025 -13.57618 -13.05684 -12.68950 -12.56693 -12.36432 -12.02754 -11.80834 -11.33437 -11.03653 -10.85638 -10.78252 -10.54571 -10.28602 -10.22774 -10.15442 -9.94888 -9.89863 -9.48746 -9.43485 -8.85147 -7.17640 -5.71192 -3.04578 3.40244 3.43197 3.48061 4.63998 4.78711 4.88576 5.04536 5.32591 5.35919 5.44812 5.54169 5.56873 5.60459 5.67998 5.71096 5.89862 6.07412 6.15046 6.16970 6.26743 6.27436 6.32509 6.34153 6.40095 6.49986 6.53712 6.59172 6.66664 6.75619 6.86003 6.99126 7.14743 8.07737 8.48843 9.28935 10.01818 10.22910 11.47766 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.009788 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.179881 B = 2860.051681 C = 3053.305917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.178 3.822 3 H 0.053 0.947 4 N -0.746 5.746 5 C -0.236 4.236 6 H 0.089 0.911 7 C 0.002 3.998 8 N -0.937 5.937 9 Si 0.880 3.120 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.278 1.278 13 C -0.088 4.088 14 C -0.105 4.105 15 C -0.120 4.120 16 C -0.115 4.115 17 C -0.115 4.115 18 C -0.120 4.120 19 C -0.112 4.112 20 H 0.051 0.949 21 H 0.036 0.964 22 H 0.047 0.953 23 H 0.361 0.639 24 H 0.258 0.742 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.071 0.929 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.217 -4.296 -16.376 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.069 3.931 3 H 0.071 0.929 4 N -0.390 5.390 5 C -0.366 4.366 6 H 0.107 0.893 7 C -0.193 4.193 8 N -0.586 5.586 9 Si 0.711 3.289 10 H -0.211 1.211 11 H -0.219 1.219 12 H -0.204 1.204 13 C -0.108 4.108 14 C -0.142 4.142 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.150 4.150 20 H 0.071 0.929 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.195 0.805 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.082 0.918 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.206 -4.118 -16.192 16.709 hybrid contribution 0.268 -1.351 0.193 1.391 sum 0.062 -5.469 -16.000 16.909 Atomic orbital electron populations 1.22454 0.99335 1.01088 0.99661 1.20360 0.91646 0.95366 0.85766 0.92873 1.42852 1.79698 1.09372 1.07087 1.19108 1.36127 0.95485 0.85864 0.89330 1.24642 1.01822 0.97255 0.95624 1.69693 1.53171 1.35456 1.00265 0.86606 0.78469 0.87148 0.76677 1.21142 1.21889 1.20405 1.21228 0.95508 0.95688 0.98338 1.21307 0.95324 1.02779 0.94838 1.20525 1.00929 0.97407 0.96854 1.20492 0.96962 0.98050 0.99755 1.21335 0.96895 0.99878 0.97114 1.21379 1.00461 0.98130 0.95742 1.21983 0.98734 0.94902 0.99403 0.92937 0.94475 0.93401 0.80543 0.93213 0.91791 0.92110 0.91020 0.92828 0.92512 0.93071 0.92435 0.91634 0.92701 0.92315 0.92961 0.91830 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 8.95 37.16 0.33 -2.64 16 2 C 0.18 3.43 2.38 -67.93 -0.16 3.26 16 3 H 0.05 1.08 8.00 -51.93 -0.42 0.66 16 4 N -0.75 -17.55 4.35 -53.43 -0.23 -17.78 16 5 C -0.24 -6.67 10.41 -15.06 -0.16 -6.82 16 6 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 7 C 0.00 0.05 5.50 -17.43 -0.10 -0.04 16 8 N -0.94 -29.79 13.97 55.49 0.78 -29.02 16 9 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.28 -6.70 6.52 56.52 0.37 -6.33 16 13 C -0.09 -1.39 1.54 -91.33 -0.14 -1.53 16 14 C -0.10 -1.65 4.73 -27.35 -0.13 -1.78 16 15 C -0.12 -1.51 5.26 -29.60 -0.16 -1.67 16 16 C -0.12 -1.32 5.27 -29.60 -0.16 -1.48 16 17 C -0.11 -1.30 5.61 -27.31 -0.15 -1.45 16 18 C -0.12 -1.54 5.32 -27.40 -0.15 -1.69 16 19 C -0.11 -1.69 4.22 -25.62 -0.11 -1.80 16 20 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 21 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.85 7.06 -51.93 -0.37 0.49 16 23 H 0.36 8.42 3.94 -40.82 -0.16 8.26 16 24 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 25 H 0.06 0.91 6.62 -51.93 -0.34 0.56 16 26 H 0.06 1.02 6.98 -51.93 -0.36 0.66 16 27 H 0.07 1.26 7.66 -51.93 -0.40 0.86 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.68 7.47 -51.93 -0.39 0.30 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.68 7.46 -51.93 -0.39 0.29 16 32 H 0.06 0.75 6.96 -51.93 -0.36 0.39 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.79 6.63 -51.93 -0.34 0.45 16 35 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.06 1.11 6.20 -51.93 -0.32 0.79 16 37 H 0.06 0.80 7.45 -51.93 -0.39 0.41 16 LS Contribution 273.61 15.07 4.12 4.12 Total: -1.00 -30.13 273.61 -7.48 -37.61 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -6.36 Total: 4.94 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -1.07 Total: -17.63 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.54 Total: -46.80 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.13 -7.48 -37.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088169260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.574 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds