Wall clock time and date at job start Mon Mar 30 2020 03:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46864 * 2 1 4 4 N 1.46497 * 109.47098 * 120.00023 * 2 1 3 5 5 C 1.36934 * 120.00009 * 275.00114 * 4 2 1 6 6 H 1.07994 * 120.00485 * 0.02562 * 5 4 2 7 7 C 1.38818 * 120.00143 * 180.02562 * 5 4 2 8 8 N 1.31611 * 120.00354 * 179.97438 * 7 5 4 9 9 Si 1.86808 * 119.99775 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.47055 * 89.99833 * 9 7 5 11 11 H 1.48493 * 109.47083 * 210.00169 * 9 7 5 12 12 H 1.48503 * 109.46785 * 330.00329 * 9 7 5 13 13 C 1.52995 * 109.46847 * 240.00224 * 2 1 3 14 14 C 1.50475 * 108.87461 * 179.22312 * 13 2 1 15 15 C 1.54236 * 108.52263 * 214.93096 * 14 13 2 16 16 C 1.45548 * 112.40650 * 280.00764 * 15 14 13 17 17 C 1.54242 * 112.32667 * 61.98543 * 16 15 14 18 18 C 1.50552 * 108.47856 * 279.87890 * 17 16 15 19 19 C 1.54060 * 108.88031 * 302.19697 * 13 2 1 20 20 H 1.09003 * 109.47180 * 305.79939 * 1 2 3 21 21 H 1.09004 * 109.47448 * 65.79757 * 1 2 3 22 22 H 1.09003 * 109.47498 * 185.79820 * 1 2 3 23 23 H 0.96998 * 120.00172 * 95.00144 * 4 2 1 24 24 H 0.96997 * 120.00371 * 179.97438 * 8 7 5 25 25 H 1.09000 * 108.85909 * 60.66812 * 13 2 1 26 26 H 1.09005 * 109.62831 * 95.21963 * 14 13 2 27 27 H 1.08999 * 109.63153 * 334.64379 * 14 13 2 28 28 H 1.09000 * 108.89933 * 159.25812 * 15 14 13 29 29 H 1.09000 * 108.89849 * 40.75881 * 15 14 13 30 30 H 1.08999 * 108.89495 * 182.68567 * 16 15 14 31 31 H 1.08994 * 108.89478 * 301.27403 * 16 15 14 32 32 H 1.08995 * 109.62936 * 39.67969 * 17 16 15 33 33 H 1.08993 * 109.62884 * 160.25783 * 17 16 15 34 34 H 1.08993 * 108.92860 * 333.51507 * 18 17 16 35 35 H 1.09000 * 108.91827 * 215.01439 * 18 17 16 36 36 H 1.09007 * 108.81545 * 318.37196 * 19 13 2 37 37 H 1.09002 * 108.81208 * 76.64939 * 19 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.1491 -0.0075 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6617 3.5090 8 7 2.7385 -0.0051 4.6427 9 14 3.0566 -2.4743 3.4251 10 1 4.4892 -2.6164 3.0606 11 1 2.8176 -3.1043 4.7484 12 1 2.2162 -3.1429 2.3994 13 6 2.0399 -0.7212 -1.2492 14 6 3.5445 -0.6967 -1.2454 15 6 4.0361 -0.5694 -2.7018 16 6 4.0132 -1.8417 -3.4083 17 6 2.5893 -2.4241 -3.5202 18 6 2.2424 -3.0905 -2.2156 19 6 1.4738 -2.1539 -1.2638 20 1 -0.3634 0.6011 0.8335 21 1 -0.3634 0.4213 -0.9374 22 1 -0.3634 -1.0224 0.1038 23 1 2.2490 -1.6317 1.1526 24 1 3.0618 -0.4623 5.4346 25 1 1.6809 -0.1927 -2.1324 26 1 3.9246 -1.6209 -0.8100 27 1 3.8954 0.1563 -0.6646 28 1 5.0566 -0.1864 -2.6977 29 1 3.3973 0.1388 -3.2294 30 1 4.4147 -1.6959 -4.4111 31 1 4.6446 -2.5527 -2.8756 32 1 1.8804 -1.6216 -3.7234 33 1 2.5562 -3.1581 -4.3253 34 1 3.1622 -3.4120 -1.7272 35 1 1.6282 -3.9677 -2.4191 36 1 1.5228 -2.5616 -0.2540 37 1 0.4298 -2.1162 -1.5749 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088169260.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:40 Heat of formation + Delta-G solvation = -33.624696 kcal Electronic energy + Delta-G solvation = -15044.563468 eV Core-core repulsion = 12820.218377 eV Total energy + Delta-G solvation = -2224.345091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36268 -37.18215 -34.44510 -33.11112 -32.12651 -30.24119 -26.22351 -25.51435 -24.87386 -22.13696 -21.29444 -19.90835 -19.38991 -16.81503 -16.58080 -15.89708 -15.51483 -15.46603 -14.68116 -14.58206 -14.31539 -13.92553 -13.72730 -13.64832 -12.98033 -12.86131 -12.68727 -12.54843 -12.32987 -12.00088 -11.85409 -11.51447 -11.36105 -11.32812 -11.12594 -11.01472 -10.89791 -10.76593 -9.25686 -8.00839 -5.31011 1.34387 1.37392 1.44498 2.47995 3.30812 3.64186 3.83090 3.87117 3.92529 4.23418 4.35005 4.40496 4.45061 4.55166 4.62533 4.68745 4.82888 4.89111 4.98083 4.99340 5.17137 5.18848 5.23781 5.33624 5.35234 5.40217 5.43595 5.47132 5.54075 5.59853 5.66888 5.74563 5.81873 6.24815 7.11737 7.90839 8.09555 9.21542 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.034424 B = 0.009788 C = 0.009168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.179881 B = 2860.051681 C = 3053.305917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.168 3.832 3 H 0.037 0.963 4 N -0.746 5.746 5 C -0.219 4.219 6 H 0.054 0.946 7 C -0.067 4.067 8 N -0.987 5.987 9 Si 0.948 3.052 10 H -0.279 1.279 11 H -0.297 1.297 12 H -0.255 1.255 13 C -0.078 4.078 14 C -0.105 4.105 15 C -0.112 4.112 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.117 4.117 19 C -0.111 4.111 20 H 0.025 0.975 21 H 0.072 0.928 22 H 0.050 0.950 23 H 0.364 0.636 24 H 0.256 0.744 25 H 0.089 0.911 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.048 0.952 35 H 0.065 0.935 36 H 0.035 0.965 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.490 -5.904 -19.357 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.060 3.940 3 H 0.055 0.945 4 N -0.391 5.391 5 C -0.351 4.351 6 H 0.072 0.928 7 C -0.258 4.258 8 N -0.639 5.639 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.180 1.180 13 C -0.096 4.096 14 C -0.143 4.143 15 C -0.150 4.150 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.154 4.154 19 C -0.148 4.148 20 H 0.045 0.955 21 H 0.091 0.909 22 H 0.069 0.931 23 H 0.198 0.802 24 H 0.064 0.936 25 H 0.107 0.893 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.054 0.946 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.497 -5.728 -19.237 20.078 hybrid contribution 0.323 -0.732 1.080 1.344 sum -0.174 -6.460 -18.157 19.273 Atomic orbital electron populations 1.22324 0.97811 1.01034 1.00506 1.20639 0.92663 0.94762 0.85919 0.94499 1.42852 1.79867 1.09468 1.06891 1.19069 1.34102 0.94289 0.87615 0.92768 1.25422 1.02928 1.02172 0.95281 1.69875 1.55317 1.37539 1.01155 0.85503 0.78595 0.81411 0.76878 1.20544 1.22353 1.17978 1.21154 0.95334 0.96249 0.96902 1.21264 0.95448 1.00755 0.96834 1.20464 1.01232 0.98663 0.94596 1.20490 0.97312 0.97005 1.00522 1.21332 0.96595 1.00373 0.96600 1.21365 0.99904 0.98174 0.95980 1.21961 0.99904 0.94381 0.98595 0.95546 0.90898 0.93118 0.80153 0.93555 0.89250 0.93530 0.93823 0.92514 0.91354 0.91046 0.93065 0.91179 0.90790 0.93325 0.91595 0.94594 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.42 8.95 71.98 0.64 -4.78 16 2 C 0.17 6.37 2.38 44.99 0.11 6.48 16 3 H 0.04 1.51 8.00 -2.38 -0.02 1.50 16 4 N -0.75 -35.22 4.35 -322.95 -1.41 -36.62 16 5 C -0.22 -12.76 10.41 84.04 0.87 -11.89 16 6 H 0.05 3.46 8.06 -2.91 -0.02 3.44 16 7 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 8 N -0.99 -64.83 13.97 21.65 0.30 -64.52 16 9 Si 0.95 46.95 27.74 68.60 1.90 48.85 16 10 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.25 -11.51 6.52 99.48 0.65 -10.86 16 13 C -0.08 -2.26 1.54 -11.25 -0.02 -2.28 16 14 C -0.11 -3.18 4.73 30.20 0.14 -3.03 16 15 C -0.11 -2.53 5.26 28.74 0.15 -2.38 16 16 C -0.12 -2.24 5.27 28.74 0.15 -2.09 16 17 C -0.11 -2.05 5.61 30.22 0.17 -1.89 16 18 C -0.12 -2.62 5.32 30.16 0.16 -2.46 16 19 C -0.11 -3.03 4.22 31.32 0.13 -2.90 16 20 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 21 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 22 H 0.05 1.71 7.06 -2.39 -0.02 1.69 16 23 H 0.36 16.72 3.94 -92.71 -0.37 16.36 16 24 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 25 H 0.09 2.20 6.62 -2.39 -0.02 2.19 16 26 H 0.05 1.52 6.98 -2.38 -0.02 1.50 16 27 H 0.04 1.54 7.66 -2.39 -0.02 1.52 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.40 7.47 -2.39 -0.02 1.38 16 30 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.05 1.07 7.46 -2.39 -0.02 1.05 16 32 H 0.07 1.26 6.96 -2.39 -0.02 1.24 16 33 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.05 1.19 6.63 -2.39 -0.02 1.18 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.04 1.18 6.20 -2.38 -0.01 1.17 16 37 H 0.07 1.71 7.45 -2.39 -0.02 1.70 16 Total: -1.00 -66.41 273.61 4.38 -62.03 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.60 Total: 21.07 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 2.98 Total: -30.81 kcal Atomic # 7 Polarization: -100.04 SS G_CDS: -1.10 Total: -101.15 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.90 Total: 48.85 kcal Total: -66.41 4.38 -62.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088169260.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.407 kcal (2) G-P(sol) polarization free energy of solvation -66.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds