Wall clock time and date at job start Mon Mar 30 2020 02:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.45776 * 2 1 4 4 C 1.53035 * 109.46255 * 119.96948 * 2 1 3 5 5 C 1.53118 * 109.28074 * 60.83970 * 4 2 1 6 6 C 1.52997 * 109.52775 * 177.55893 * 5 4 2 7 7 C 1.50701 * 109.47212 * 175.12396 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48506 * 109.47294 * 60.00559 * 11 9 7 13 13 H 1.48503 * 109.46954 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47431 * 300.00157 * 11 9 7 15 15 C 1.53127 * 109.21297 * 57.61742 * 5 4 2 16 16 C 1.53041 * 109.27483 * 302.44873 * 15 5 4 17 17 H 1.09004 * 109.41027 * 299.06032 * 16 15 5 18 18 C 1.53004 * 109.46079 * 179.12946 * 16 15 5 19 19 N 1.46846 * 109.57896 * 59.08153 * 16 15 5 20 20 C 1.46895 * 110.99929 * 174.19460 * 19 16 15 21 21 H 1.09004 * 109.47290 * 300.02980 * 1 2 3 22 22 H 1.08997 * 109.47249 * 60.02813 * 1 2 3 23 23 H 1.09003 * 109.47013 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.50775 * 300.89452 * 4 2 1 25 25 H 1.09002 * 109.50525 * 180.77609 * 4 2 1 26 26 H 1.09001 * 109.52073 * 297.68922 * 5 4 2 27 27 H 1.09002 * 109.47153 * 55.12398 * 6 5 4 28 28 H 1.09001 * 109.46832 * 295.12588 * 6 5 4 29 29 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 30 30 H 1.09002 * 109.49599 * 62.32413 * 15 5 4 31 31 H 1.08996 * 109.50202 * 182.43768 * 15 5 4 32 32 H 1.08992 * 109.46997 * 299.87960 * 18 16 15 33 33 H 1.09001 * 109.47052 * 59.88304 * 18 16 15 34 34 H 1.09001 * 109.46934 * 179.87959 * 18 16 15 35 35 H 1.09009 * 109.47078 * 184.21286 * 20 19 16 36 36 H 1.08999 * 109.47273 * 304.20652 * 20 19 16 37 37 H 1.08997 * 109.47474 * 64.20813 * 20 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0398 -0.7208 1.2500 5 6 1.5443 -2.1695 1.2357 6 6 2.1010 -2.9124 2.4519 7 6 1.5180 -4.3012 2.5024 8 1 0.8206 -4.6220 1.7428 9 6 1.8759 -5.1626 3.5177 10 7 2.7256 -4.7720 4.4424 11 14 1.1539 -6.8842 3.5799 12 1 1.5178 -7.6187 2.3415 13 1 1.6941 -7.6052 4.7604 14 1 -0.3247 -6.7974 3.6875 15 6 2.0256 -2.8541 -0.0466 16 6 1.5174 -2.0705 -1.2590 17 1 0.4274 -2.0608 -1.2531 18 6 2.0142 -2.7387 -2.5426 19 7 2.0193 -0.6917 -1.1994 20 6 1.6651 0.0505 -2.4165 21 1 -0.3634 0.5143 0.8897 22 1 -0.3633 0.5134 -0.8902 23 1 -0.3633 -1.0277 0.0005 24 1 1.6637 -0.2163 2.1399 25 1 3.1298 -0.7091 1.2577 26 1 0.4549 -2.1821 1.2684 27 1 1.8340 -2.3730 3.3607 28 1 3.1863 -2.9765 2.3730 29 1 2.9771 -5.3779 5.1570 30 1 3.1153 -2.8769 -0.0599 31 1 1.6393 -3.8727 -0.0823 32 1 3.1040 -2.7481 -2.5490 33 1 1.6417 -3.7621 -2.5871 34 1 1.6505 -2.1819 -3.4063 35 1 2.1121 1.0440 -2.3793 36 1 2.0394 -0.4837 -3.2898 37 1 0.5810 0.1421 -2.4837 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000107412614.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:28 Heat of formation + Delta-G solvation = -36.537281 kcal Electronic energy + Delta-G solvation = -14940.794058 eV Core-core repulsion = 12716.322668 eV Total energy + Delta-G solvation = -2224.471390 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.82279 -36.29133 -34.34565 -33.96165 -30.60741 -28.57286 -27.49970 -26.62924 -24.68233 -22.83988 -21.18778 -19.48996 -18.40872 -16.75403 -16.54855 -16.42696 -15.65019 -15.23550 -14.87067 -14.39804 -14.09410 -13.62929 -13.42017 -13.21276 -13.02726 -12.89362 -12.69864 -12.58642 -12.47279 -12.42963 -12.15248 -11.95536 -11.68345 -11.51826 -11.14502 -10.78250 -10.59804 -10.49395 -9.07159 -8.16944 -6.26754 1.38852 1.41834 1.49529 2.41717 3.06282 3.16004 3.93249 3.99325 3.99731 4.18233 4.36322 4.47152 4.55741 4.59331 4.61377 4.72266 4.75507 4.87538 4.93270 5.01241 5.02820 5.12563 5.15875 5.21226 5.24632 5.35622 5.39290 5.46357 5.54399 5.59297 5.82532 5.90849 6.27320 6.31046 6.37497 6.89228 7.41474 8.94938 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.043119 B = 0.008113 C = 0.007417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.208547 B = 3450.369620 C = 3774.428968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.087 3.913 3 H 0.092 0.908 4 C -0.103 4.103 5 C -0.073 4.073 6 C 0.034 3.966 7 C -0.530 4.530 8 H 0.060 0.940 9 C -0.002 4.002 10 N -0.936 5.936 11 Si 0.960 3.040 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.267 1.267 15 C -0.087 4.087 16 C 0.082 3.918 17 H 0.040 0.960 18 C -0.141 4.141 19 N -0.543 5.543 20 C 0.019 3.981 21 H 0.063 0.937 22 H 0.068 0.932 23 H 0.048 0.952 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.051 0.949 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.262 0.738 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.931 8.319 -13.361 16.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.021 4.021 3 H 0.110 0.890 4 C -0.141 4.141 5 C -0.092 4.092 6 C -0.003 4.003 7 C -0.568 4.568 8 H 0.078 0.922 9 C -0.199 4.199 10 N -0.577 5.577 11 Si 0.785 3.215 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.192 1.192 15 C -0.125 4.125 16 C -0.026 4.026 17 H 0.058 0.942 18 C -0.199 4.199 19 N -0.268 5.268 20 C -0.129 4.129 21 H 0.082 0.918 22 H 0.087 0.913 23 H 0.067 0.933 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.003 0.997 28 H 0.004 0.996 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -3.327 8.242 -13.193 15.908 hybrid contribution -0.895 -0.984 0.725 1.515 sum -4.222 7.258 -12.468 15.032 Atomic orbital electron populations 1.22426 0.97108 1.01898 1.02573 1.21630 0.93180 0.97667 0.89631 0.89002 1.21625 1.00213 0.95292 0.97008 1.21091 0.98627 0.94226 0.95221 1.19004 0.94333 0.94261 0.92686 1.21620 1.25939 0.99312 1.09932 0.92216 1.25963 0.95615 1.03014 0.95354 1.70102 1.35130 1.37781 1.14661 0.85578 0.78910 0.79290 0.77754 1.19166 1.20941 1.19236 1.21456 0.99766 0.98075 0.93247 1.21626 0.96759 0.88618 0.95637 0.94196 1.21888 1.01720 1.00304 0.95974 1.62129 1.59949 1.01918 1.02830 1.22519 0.99088 0.98950 0.92319 0.91763 0.91288 0.93276 0.92201 0.93052 0.93024 0.99682 0.99641 0.92933 0.93735 0.92860 0.92492 0.92126 0.90731 0.90715 0.90227 0.95071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 8.18 71.98 0.59 -4.09 16 2 C 0.09 2.47 2.93 44.94 0.13 2.60 16 3 H 0.09 2.29 8.12 -2.39 -0.02 2.27 16 4 C -0.10 -3.73 4.90 30.65 0.15 -3.58 16 5 C -0.07 -3.10 1.89 -10.71 -0.02 -3.12 16 6 C 0.03 1.86 4.45 29.85 0.13 2.00 16 7 C -0.53 -30.63 8.44 25.60 0.22 -30.41 16 8 H 0.06 3.30 7.07 -2.91 -0.02 3.28 16 9 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 10 N -0.94 -58.42 13.29 21.45 0.28 -58.13 16 11 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 13 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 14 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 15 C -0.09 -3.42 4.43 30.65 0.14 -3.28 16 16 C 0.08 2.47 2.14 44.94 0.10 2.57 16 17 H 0.04 1.22 6.19 -2.39 -0.01 1.20 16 18 C -0.14 -3.54 8.77 71.98 0.63 -2.90 16 19 N -0.54 -15.18 4.69 -871.92 -4.09 -19.28 16 20 C 0.02 0.39 8.91 127.69 1.14 1.52 16 21 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.07 1.49 6.54 -2.39 -0.02 1.47 16 23 H 0.05 1.44 4.80 -2.39 -0.01 1.43 16 24 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.05 2.21 6.56 -2.39 -0.02 2.19 16 27 H -0.02 -0.90 8.14 -2.39 -0.02 -0.92 16 28 H -0.01 -0.89 8.14 -2.39 -0.02 -0.90 16 29 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.05 2.22 7.04 -2.39 -0.02 2.21 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.50 6.23 -2.39 -0.01 1.48 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.08 1.48 5.96 -2.39 -0.01 1.46 16 37 H 0.03 0.60 6.46 -2.39 -0.02 0.59 16 Total: -1.00 -64.48 275.92 2.90 -61.58 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.02 Total: 7.09 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 3.66 Total: -38.37 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -3.81 Total: -77.41 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -64.48 2.90 -61.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107412614.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.046 kcal (2) G-P(sol) polarization free energy of solvation -64.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds