Wall clock time and date at job start Mon Mar 30 2020 03:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 115.54951 * 2 1 4 4 C 1.53000 * 117.50107 * 214.32788 * 2 1 3 5 5 C 1.53002 * 117.49888 * 145.67026 * 2 1 3 6 6 H 1.09000 * 117.49996 * 215.00804 * 5 2 1 7 7 N 1.46904 * 117.49805 * 359.97438 * 5 2 1 8 8 C 1.46891 * 111.00180 * 205.00284 * 7 5 2 9 9 C 1.53003 * 109.47470 * 180.02562 * 8 7 5 10 10 C 1.53009 * 109.46855 * 299.99767 * 9 8 7 11 11 C 1.52993 * 109.47063 * 59.99369 * 9 8 7 12 12 C 1.52992 * 109.47266 * 180.02562 * 9 8 7 13 13 C 1.50707 * 109.46983 * 179.97438 * 12 9 8 14 14 H 1.07995 * 119.99884 * 359.97438 * 13 12 9 15 15 C 1.37875 * 119.99780 * 180.02562 * 13 12 9 16 16 N 1.31521 * 120.00494 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99892 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46906 * 59.99656 * 17 15 13 19 19 H 1.48504 * 109.47056 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46950 * 299.99722 * 17 15 13 21 21 H 1.09000 * 109.47181 * 274.41811 * 1 2 3 22 22 H 1.09005 * 109.47217 * 34.42156 * 1 2 3 23 23 H 1.09003 * 109.47442 * 154.41657 * 1 2 3 24 24 H 1.09008 * 117.49673 * 359.97438 * 4 2 1 25 25 H 1.08999 * 117.49959 * 144.99502 * 4 2 1 26 26 H 1.00902 * 110.99869 * 328.95891 * 7 5 2 27 27 H 1.09004 * 109.47266 * 299.99819 * 8 7 5 28 28 H 1.08999 * 109.47580 * 59.99811 * 8 7 5 29 29 H 1.09005 * 109.46558 * 59.99468 * 10 9 8 30 30 H 1.08997 * 109.46914 * 179.97438 * 10 9 8 31 31 H 1.09000 * 109.46670 * 300.00392 * 10 9 8 32 32 H 1.09004 * 109.46928 * 60.00901 * 11 9 8 33 33 H 1.09001 * 109.46957 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.47550 * 300.00584 * 11 9 8 35 35 H 1.09004 * 109.47269 * 299.99432 * 12 9 8 36 36 H 1.09000 * 109.47420 * 59.99952 * 12 9 8 37 37 H 0.96993 * 120.00323 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2365 -1.1207 -0.7653 5 6 2.2364 -1.1207 0.7654 6 1 3.1713 -0.8747 1.2690 7 7 1.3937 -2.1141 1.4445 8 6 2.1100 -2.7320 2.5683 9 6 1.2026 -3.7589 3.2487 10 6 -0.0567 -3.0620 3.7680 11 6 0.8083 -4.8390 2.2395 12 6 1.9484 -4.4020 4.4196 13 6 1.0544 -5.4131 5.0902 14 1 0.0542 -5.5799 4.7186 15 6 1.5131 -6.1243 6.1786 16 7 2.7310 -5.9208 6.6314 17 14 0.4047 -7.3770 7.0103 18 1 0.0218 -8.4261 6.0315 19 1 1.1287 -8.0012 8.1467 20 1 -0.8174 -6.6997 7.5134 21 1 -0.3633 0.0792 1.0246 22 1 -0.3634 0.8478 -0.5809 23 1 -0.3634 -0.9269 -0.4438 24 1 1.6112 -1.8584 -1.2685 25 1 3.1713 -0.8746 -1.2689 26 1 0.5254 -1.7022 1.7517 27 1 3.0069 -3.2289 2.1983 28 1 2.3913 -1.9625 3.2871 29 1 -0.5881 -2.6034 2.9340 30 1 -0.7033 -3.7936 4.2523 31 1 0.2244 -2.2924 4.4869 32 1 1.7054 -5.3356 1.8696 33 1 0.1614 -5.5704 2.7242 34 1 0.2768 -4.3806 1.4056 35 1 2.8458 -4.8985 4.0501 36 1 2.2290 -3.6322 5.1385 37 1 3.0538 -6.4214 7.3969 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126764948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:00 Heat of formation + Delta-G solvation = -0.484338 kcal Electronic energy + Delta-G solvation = -14365.537845 eV Core-core repulsion = 12142.629828 eV Total energy + Delta-G solvation = -2222.908017 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.49063 -36.67997 -32.85428 -31.39832 -28.39329 -26.88213 -26.31279 -25.12356 -22.51163 -21.36392 -19.90460 -17.87284 -16.25019 -15.79748 -15.33933 -14.59105 -14.09159 -13.57251 -13.05461 -13.00527 -12.75047 -12.40930 -12.01661 -11.94081 -11.60841 -11.39531 -11.04340 -10.89663 -10.77639 -10.53261 -10.42058 -10.17876 -10.12506 -9.84467 -9.64993 -8.98603 -8.80756 -8.29551 -7.92986 -5.94215 -3.94443 3.36107 3.40654 3.42910 3.85513 4.30294 4.51556 4.80879 5.01527 5.27397 5.34905 5.41459 5.66276 5.70378 5.76308 5.82693 5.87526 5.93424 5.99851 6.08768 6.28809 6.32750 6.37102 6.53496 6.67961 6.81634 6.85000 7.22836 7.26876 7.28436 7.45698 7.69404 7.73531 7.87950 8.05995 8.50352 9.10675 9.68207 11.17456 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.063355 B = 0.006112 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 441.846264 B = 4579.762712 C = 4720.575823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.174 4.174 3 H 0.098 0.902 4 C -0.169 4.169 5 C 0.023 3.977 6 H 0.095 0.905 7 N -0.655 5.655 8 C 0.071 3.929 9 C -0.059 4.059 10 C -0.129 4.129 11 C -0.116 4.116 12 C 0.034 3.966 13 C -0.507 4.507 14 H 0.058 0.942 15 C 0.055 3.945 16 N -0.898 5.898 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.278 1.278 21 H 0.056 0.944 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.340 0.660 27 H 0.067 0.933 28 H 0.024 0.976 29 H 0.032 0.968 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.013 0.987 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 9.723 -11.025 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.193 4.193 3 H 0.116 0.884 4 C -0.207 4.207 5 C -0.088 4.088 6 H 0.113 0.887 7 N -0.287 5.287 8 C -0.057 4.057 9 C -0.059 4.059 10 C -0.187 4.187 11 C -0.173 4.173 12 C -0.004 4.004 13 C -0.546 4.546 14 H 0.077 0.923 15 C -0.146 4.146 16 N -0.538 5.538 17 Si 0.716 3.284 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.204 1.204 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.116 0.884 25 H 0.106 0.894 26 H 0.162 0.838 27 H 0.085 0.915 28 H 0.043 0.957 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.031 0.969 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.700 9.148 -11.301 14.788 hybrid contribution -0.381 0.019 1.218 1.277 sum -3.081 9.167 -10.083 13.971 Atomic orbital electron populations 1.21243 0.92890 1.02053 1.01570 1.22615 0.95690 0.94342 1.06664 0.88377 1.23233 1.01866 1.00615 0.95005 1.22484 0.98003 0.94835 0.93458 0.88725 1.60311 1.06631 1.31526 1.30272 1.22165 0.97258 0.96326 0.89998 1.20637 0.94827 0.93967 0.96475 1.21777 0.98076 1.00043 0.98767 1.21597 1.00500 0.97923 0.97304 1.19123 0.95132 0.95083 0.91048 1.21202 0.99835 1.20769 1.12746 0.92348 1.25014 0.95013 0.97269 0.97275 1.69957 1.16392 1.41987 1.25463 0.86723 0.80743 0.81842 0.79073 1.20310 1.21443 1.20365 0.92522 0.92508 0.91865 0.88433 0.89365 0.83805 0.91456 0.95746 0.94924 0.91656 0.94066 0.94129 0.92685 0.93974 0.96642 0.96905 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.12 37.16 0.34 -0.90 16 2 C -0.17 -1.92 6.40 -90.62 -0.58 -2.50 16 3 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 4 C -0.17 -1.97 10.11 -26.70 -0.27 -2.24 16 5 C 0.02 0.31 6.25 -67.67 -0.42 -0.11 16 6 H 0.10 1.25 7.90 -51.93 -0.41 0.84 16 7 N -0.66 -9.93 5.77 -106.69 -0.62 -10.55 16 8 C 0.07 1.27 4.50 -3.83 -0.02 1.25 16 9 C -0.06 -1.19 0.60 -154.51 -0.09 -1.28 16 10 C -0.13 -2.44 7.89 37.16 0.29 -2.14 16 11 C -0.12 -2.29 8.06 37.15 0.30 -1.99 16 12 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 13 C -0.51 -13.98 7.65 -34.44 -0.26 -14.24 16 14 H 0.06 1.56 5.68 -52.49 -0.30 1.26 16 15 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 16 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 17 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 H 0.06 0.59 7.59 -51.93 -0.39 0.19 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.69 7.90 -51.93 -0.41 0.28 16 24 H 0.10 1.20 8.05 -51.92 -0.42 0.78 16 25 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.34 4.96 5.24 -39.29 -0.21 4.75 16 27 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 30 H 0.06 1.33 6.62 -51.93 -0.34 0.98 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.05 1.15 6.62 -51.93 -0.34 0.81 16 34 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 291.36 15.07 4.39 4.39 Total: -1.00 -28.83 291.36 -7.93 -36.76 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -6.50 Total: 0.96 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -0.92 Total: -21.95 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.12 Total: -36.84 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.83 -7.93 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126764948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.278 kcal (2) G-P(sol) polarization free energy of solvation -28.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds