Wall clock time and date at job start Mon Mar 30 2020 03:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47241 * 2 1 4 4 N 1.46907 * 109.46762 * 240.00742 * 2 1 3 5 5 C 1.46901 * 110.99913 * 85.00019 * 4 2 1 6 6 C 1.52997 * 109.46950 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.47152 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46980 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00246 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99805 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00209 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 119.99983 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47272 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47276 * 120.00243 * 12 10 8 15 15 H 1.48502 * 109.47286 * 240.00232 * 12 10 8 16 16 C 1.52995 * 109.47564 * 120.00659 * 2 1 3 17 17 C 1.53006 * 115.55057 * 85.57786 * 16 2 1 18 18 C 1.52996 * 117.50022 * 231.25128 * 16 2 1 19 19 C 1.52998 * 117.49891 * 299.91505 * 16 2 1 20 20 H 1.09005 * 109.46811 * 299.99206 * 1 2 3 21 21 H 1.08996 * 109.47385 * 59.98809 * 1 2 3 22 22 H 1.09001 * 109.47241 * 179.97438 * 1 2 3 23 23 H 1.00901 * 110.99692 * 208.95304 * 4 2 1 24 24 H 1.09002 * 109.46958 * 299.99550 * 5 4 2 25 25 H 1.08995 * 109.47079 * 60.00072 * 5 4 2 26 26 H 1.08998 * 109.47369 * 299.99992 * 6 5 4 27 27 H 1.09003 * 109.47470 * 59.99732 * 6 5 4 28 28 H 1.08994 * 109.47044 * 299.99968 * 7 6 5 29 29 H 1.08995 * 109.46685 * 60.00063 * 7 6 5 30 30 H 0.97000 * 120.00735 * 179.97438 * 11 10 8 31 31 H 1.09001 * 109.47002 * 60.00028 * 17 16 2 32 32 H 1.08993 * 109.46955 * 180.02562 * 17 16 2 33 33 H 1.09000 * 109.47050 * 300.00294 * 17 16 2 34 34 H 1.09006 * 117.49850 * 215.00000 * 18 16 2 35 35 H 1.08993 * 117.49905 * 0.02562 * 18 16 2 36 36 H 1.09004 * 117.49854 * 359.96662 * 19 16 2 37 37 H 1.08999 * 117.50000 * 144.97659 * 19 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 2.0823 0.2229 -2.3469 6 6 2.5948 -0.5328 -3.5746 7 6 2.6596 0.4203 -4.7698 8 6 3.1649 -0.3239 -5.9789 9 1 3.4146 -1.3719 -5.9026 10 6 3.3077 0.3330 -7.1827 11 7 3.0033 1.6090 -7.2757 12 14 3.9334 -0.5896 -8.6816 13 1 4.2021 -2.0036 -8.3160 14 1 2.9086 -0.5425 -9.7553 15 1 5.1865 0.0438 -9.1652 16 6 2.0401 -0.7214 1.2491 17 6 2.1598 -2.2421 1.1303 18 6 3.0764 0.0037 2.1099 19 6 1.6375 -0.1486 2.6095 20 1 -0.3633 0.5137 0.8901 21 1 -0.3634 0.5140 -0.8898 22 1 -0.3634 -1.0277 -0.0005 23 1 2.9172 -1.1204 -1.0290 24 1 1.0869 0.6166 -2.5525 25 1 2.7587 1.0464 -2.1182 26 1 3.5901 -0.9269 -3.3694 27 1 1.9181 -1.3561 -3.8032 28 1 1.6641 0.8140 -4.9749 29 1 3.3361 1.2438 -4.5414 30 1 3.1040 2.0713 -8.1225 31 1 2.8541 -2.4903 0.3275 32 1 2.5291 -2.6520 2.0703 33 1 1.1809 -2.6673 0.9085 34 1 3.8436 -0.6026 2.5916 35 1 3.3945 0.9948 1.7866 36 1 1.0097 0.7424 2.6146 37 1 1.4577 -0.8552 3.4198 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000167263531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:12 Heat of formation + Delta-G solvation = -20.197527 kcal Electronic energy + Delta-G solvation = -13895.262779 eV Core-core repulsion = 11671.499934 eV Total energy + Delta-G solvation = -2223.762845 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.96279 -37.14348 -35.33730 -33.28919 -30.55869 -29.40500 -27.74547 -24.93324 -23.28108 -23.02252 -21.97300 -19.51617 -18.48697 -17.29119 -16.56629 -16.20805 -16.03497 -15.09415 -14.94164 -14.48038 -13.93689 -13.88812 -13.47829 -13.32421 -13.11487 -12.98059 -12.75745 -12.67250 -12.45197 -12.21462 -12.17563 -11.70356 -11.46956 -11.39952 -11.21484 -10.94149 -10.56397 -10.50875 -9.35229 -8.20516 -6.31756 1.40088 1.40569 1.54339 2.41069 2.83226 3.12630 3.19965 3.72232 3.95579 4.04015 4.16147 4.24280 4.35221 4.42685 4.62177 4.70535 4.76373 4.83344 4.93488 4.94949 5.00549 5.03766 5.05915 5.16345 5.22055 5.23090 5.28107 5.39772 5.49614 5.52692 5.74275 5.85223 6.12327 6.27616 6.52065 6.85318 7.37690 8.91801 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.062864 B = 0.004825 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.300205 B = 5802.132035 C = 5928.336484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.118 3.882 3 H 0.031 0.969 4 N -0.680 5.680 5 C 0.073 3.927 6 C -0.091 4.091 7 C 0.024 3.976 8 C -0.542 4.542 9 H 0.060 0.940 10 C -0.002 4.002 11 N -0.935 5.935 12 Si 0.967 3.033 13 H -0.262 1.262 14 H -0.277 1.277 15 H -0.277 1.277 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.181 4.181 19 C -0.159 4.159 20 H 0.070 0.930 21 H 0.039 0.961 22 H 0.059 0.941 23 H 0.343 0.657 24 H 0.059 0.941 25 H 0.018 0.982 26 H 0.050 0.950 27 H 0.053 0.947 28 H -0.009 1.009 29 H -0.010 1.010 30 H 0.264 0.736 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.995 -4.822 18.774 19.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.008 3.992 3 H 0.049 0.951 4 N -0.313 5.313 5 C -0.057 4.057 6 C -0.129 4.129 7 C -0.013 4.013 8 C -0.580 4.580 9 H 0.078 0.922 10 C -0.199 4.199 11 N -0.575 5.575 12 Si 0.791 3.209 13 H -0.186 1.186 14 H -0.203 1.203 15 H -0.203 1.203 16 C -0.139 4.139 17 C -0.160 4.160 18 C -0.218 4.218 19 C -0.196 4.196 20 H 0.089 0.911 21 H 0.059 0.941 22 H 0.078 0.922 23 H 0.163 0.837 24 H 0.077 0.923 25 H 0.036 0.964 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.009 0.991 29 H 0.008 0.992 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.622 -4.935 18.496 19.322 hybrid contribution 1.020 0.666 -0.888 1.507 sum -1.602 -4.269 17.608 18.189 Atomic orbital electron populations 1.21730 0.94086 1.02187 1.01058 1.21053 0.96054 0.94308 0.87752 0.95077 1.60635 1.33578 1.33060 1.03992 1.21860 0.99561 0.93531 0.90717 1.21361 0.99710 0.98259 0.93553 1.18980 0.94783 0.94453 0.93103 1.21729 1.43678 0.96884 0.95746 0.92202 1.26007 0.95647 0.95782 1.02492 1.70106 1.49930 1.10770 1.26727 0.85367 0.77986 0.79000 0.78500 1.18557 1.20304 1.20259 1.21605 1.04718 0.96030 0.91499 1.21159 1.02059 0.91116 1.01646 1.23201 0.93132 1.01605 1.03859 1.23080 0.97376 1.03136 0.96031 0.91133 0.94143 0.92173 0.83729 0.92253 0.96373 0.93143 0.92839 0.99106 0.99197 0.92756 0.92434 0.91653 0.92342 0.87803 0.89588 0.88575 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 9.26 71.98 0.67 -2.48 16 2 C 0.12 2.95 2.71 44.91 0.12 3.07 16 3 H 0.03 0.84 7.56 -2.39 -0.02 0.82 16 4 N -0.68 -20.10 5.77 -491.57 -2.84 -22.94 16 5 C 0.07 2.63 5.48 86.30 0.47 3.10 16 6 C -0.09 -3.91 5.41 30.59 0.17 -3.74 16 7 C 0.02 1.34 4.97 29.85 0.15 1.49 16 8 C -0.54 -31.80 9.11 25.60 0.23 -31.57 16 9 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 10 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 11 N -0.93 -58.06 13.29 21.45 0.28 -57.77 16 12 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 13 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 14 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 C -0.14 -2.76 1.81 -52.18 -0.09 -2.86 16 17 C -0.10 -1.94 9.15 71.98 0.66 -1.29 16 18 C -0.18 -3.23 9.89 30.62 0.30 -2.93 16 19 C -0.16 -2.58 9.45 30.62 0.29 -2.29 16 20 H 0.07 1.37 7.29 -2.38 -0.02 1.36 16 21 H 0.04 1.06 7.45 -2.39 -0.02 1.05 16 22 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 23 H 0.34 9.59 6.99 -89.69 -0.63 8.96 16 24 H 0.06 2.23 7.44 -2.39 -0.02 2.21 16 25 H 0.02 0.67 8.05 -2.39 -0.02 0.65 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 29 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 30 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 31 H 0.06 1.17 6.77 -2.39 -0.02 1.15 16 32 H 0.06 1.01 8.11 -2.39 -0.02 0.99 16 33 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 35 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.10 1.51 7.61 -2.39 -0.02 1.49 16 37 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -63.73 299.12 3.28 -60.44 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.38 Total: 12.35 kcal Atomic # 6 Polarization: -42.58 SS G_CDS: 3.43 Total: -39.15 kcal Atomic # 7 Polarization: -78.16 SS G_CDS: -2.55 Total: -80.71 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.73 3.28 -60.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000167263531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.247 kcal (2) G-P(sol) polarization free energy of solvation -63.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds