Wall clock time and date at job start Mon Mar 30 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50706 * 109.47103 * 119.99832 * 2 1 3 5 5 H 1.07998 * 119.99679 * 25.79369 * 4 2 1 6 6 C 1.37871 * 119.99952 * 205.79257 * 4 2 1 7 7 N 1.31521 * 120.00010 * 353.22067 * 6 4 2 8 8 Si 1.86800 * 120.00070 * 173.22396 * 6 4 2 9 9 H 1.48505 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47059 * 239.99748 * 8 6 4 11 11 H 1.48503 * 109.47113 * 119.99592 * 8 6 4 12 12 N 1.46899 * 109.47076 * 239.99613 * 2 1 3 13 13 C 1.46843 * 111.00094 * 295.79358 * 12 2 1 14 14 C 1.53038 * 109.52083 * 185.83701 * 13 12 2 15 15 C 1.53116 * 109.28072 * 300.82036 * 14 13 12 16 16 C 1.53114 * 109.16044 * 57.65315 * 15 14 13 17 17 H 1.09000 * 109.53698 * 62.30936 * 16 15 14 18 18 C 1.53002 * 109.50359 * 182.40697 * 16 15 14 19 19 C 1.46848 * 110.99787 * 60.00331 * 12 2 1 20 20 H 1.09010 * 109.46316 * 294.16534 * 19 12 2 21 21 C 1.52996 * 109.46367 * 54.14202 * 19 12 2 22 22 H 1.09005 * 109.46883 * 299.23232 * 1 2 3 23 23 H 1.09000 * 109.46750 * 59.23002 * 1 2 3 24 24 H 1.08998 * 109.46977 * 179.23443 * 1 2 3 25 25 H 0.96991 * 119.99957 * 354.62839 * 7 6 4 26 26 H 1.08995 * 109.46201 * 305.85072 * 13 12 2 27 27 H 1.08996 * 109.46643 * 65.82314 * 13 12 2 28 28 H 1.08999 * 109.50376 * 180.87646 * 14 13 12 29 29 H 1.09004 * 109.53744 * 60.78488 * 14 13 12 30 30 H 1.09001 * 109.52154 * 297.74583 * 15 14 13 31 31 H 1.09005 * 109.52304 * 177.56127 * 15 14 13 32 32 H 1.09001 * 109.47306 * 179.80625 * 18 16 15 33 33 H 1.09006 * 109.46856 * 299.80097 * 18 16 15 34 34 H 1.09000 * 109.47158 * 59.80275 * 18 16 15 35 35 H 1.08997 * 109.47425 * 60.00370 * 21 19 12 36 36 H 1.09003 * 109.47576 * 180.02562 * 21 19 12 37 37 H 1.09001 * 109.47305 * 300.00166 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 1.4184 -1.4577 1.7110 6 6 3.2757 -0.4062 1.7428 7 7 4.0775 0.4034 1.0860 8 14 3.8217 -1.1442 3.3697 9 1 2.7443 -2.0152 3.9045 10 1 4.1027 -0.0541 4.3381 11 1 5.0516 -1.9495 3.1601 12 7 2.0197 -0.6926 -1.1994 13 6 1.6327 -2.1090 -1.1840 14 6 2.2799 -2.8288 -2.3693 15 6 1.8216 -2.1693 -3.6729 16 6 2.1936 -0.6844 -3.6428 17 1 3.2770 -0.5812 -3.5824 18 6 1.6859 -0.0046 -4.9160 19 6 1.5489 -0.0267 -2.4206 20 1 0.4647 -0.1176 -2.4890 21 6 1.9344 1.4532 -2.3753 22 1 -0.3633 0.5019 0.8968 23 1 -0.3633 0.5258 -0.8830 24 1 -0.3633 -1.0276 -0.0137 25 1 3.8274 0.7247 0.2057 26 1 1.9683 -2.5671 -0.2537 27 1 0.5483 -2.1901 -1.2581 28 1 1.9800 -3.8768 -2.3666 29 1 3.3649 -2.7607 -2.2889 30 1 0.7410 -2.2723 -3.7729 31 1 2.3139 -2.6512 -4.5177 32 1 1.9479 1.0532 -4.8924 33 1 2.1455 -0.4734 -5.7861 34 1 0.6026 -0.1093 -4.9765 35 1 3.0183 1.5444 -2.3066 36 1 1.5846 1.9478 -3.2815 37 1 1.4744 1.9220 -1.5053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224699802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:47 Heat of formation + Delta-G solvation = -20.053629 kcal Electronic energy + Delta-G solvation = -15416.273727 eV Core-core repulsion = 13192.517122 eV Total energy + Delta-G solvation = -2223.756605 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.99450 -34.86471 -32.46636 -31.94957 -29.08997 -27.22640 -25.39403 -24.49426 -22.85190 -20.62805 -20.05891 -18.50893 -16.49209 -14.96649 -14.66025 -14.20992 -13.74484 -13.68492 -13.44859 -13.09578 -12.45926 -12.05246 -11.84755 -11.60159 -11.38728 -11.26209 -11.16797 -10.87877 -10.76502 -10.68955 -10.17626 -10.16766 -10.06112 -9.84012 -9.56966 -9.24449 -8.35341 -8.30015 -6.93794 -6.22933 -3.97600 3.48484 3.51419 3.64847 4.59378 4.91140 5.20746 5.27530 5.40778 5.62080 5.67268 5.89203 5.91304 5.95317 6.04779 6.07557 6.20773 6.27020 6.28125 6.37299 6.38947 6.39674 6.47631 6.57962 6.60566 6.75984 6.79462 6.85930 6.90809 7.06543 7.15773 7.43541 8.02449 8.46359 8.62476 8.68586 9.02942 9.80164 11.17246 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.010432 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.865897 B = 2683.486849 C = 2850.651670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.188 3.812 3 H 0.051 0.949 4 C -0.591 4.591 5 H 0.045 0.955 6 C 0.033 3.967 7 N -0.901 5.901 8 Si 1.066 2.934 9 H -0.291 1.291 10 H -0.288 1.288 11 H -0.289 1.289 12 N -0.519 5.519 13 C 0.070 3.930 14 C -0.118 4.118 15 C -0.110 4.110 16 C -0.085 4.085 17 H 0.074 0.926 18 C -0.145 4.145 19 C 0.081 3.919 20 H 0.024 0.976 21 C -0.144 4.144 22 H 0.046 0.954 23 H 0.026 0.974 24 H 0.039 0.961 25 H 0.282 0.718 26 H 0.085 0.915 27 H 0.010 0.990 28 H 0.052 0.948 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.046 0.954 37 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.341 -2.185 -8.280 9.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.083 3.917 3 H 0.069 0.931 4 C -0.630 4.630 5 H 0.063 0.937 6 C -0.175 4.175 7 N -0.535 5.535 8 Si 0.895 3.105 9 H -0.217 1.217 10 H -0.214 1.214 11 H -0.216 1.216 12 N -0.244 5.244 13 C -0.058 4.058 14 C -0.156 4.156 15 C -0.148 4.148 16 C -0.104 4.104 17 H 0.092 0.908 18 C -0.203 4.203 19 C -0.027 4.027 20 H 0.042 0.958 21 C -0.201 4.201 22 H 0.065 0.935 23 H 0.045 0.955 24 H 0.058 0.942 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.065 0.935 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.607 -2.132 -7.161 7.913 hybrid contribution -2.199 -0.142 -1.177 2.498 sum -4.806 -2.274 -8.338 9.889 Atomic orbital electron populations 1.22397 1.01605 0.99708 0.98984 1.19565 0.88089 0.96024 0.88025 0.93142 1.21823 1.04334 1.26050 1.10749 0.93685 1.25665 0.93118 0.95347 1.03334 1.70591 1.38060 1.29958 1.14912 0.83615 0.75437 0.75996 0.75419 1.21739 1.21433 1.21581 1.62770 1.59486 1.01062 1.01089 1.21766 0.95298 0.90498 0.98224 1.21629 1.01448 0.97722 0.94798 1.21594 0.99964 0.95661 0.97573 1.21188 1.00926 0.94336 0.93937 0.90789 1.21871 1.00530 1.00602 0.97272 1.21552 0.95602 0.93952 0.91640 0.95849 1.21902 1.02290 0.95526 1.00384 0.93531 0.95527 0.94222 0.90659 0.89709 0.97195 0.92974 0.91574 0.93113 0.92972 0.92532 0.93301 0.93371 0.92070 0.93531 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.69 8.44 37.16 0.31 -3.37 16 2 C 0.19 4.64 1.37 -68.86 -0.09 4.55 16 3 H 0.05 1.35 5.20 -51.93 -0.27 1.08 16 4 C -0.59 -16.24 6.79 -34.44 -0.23 -16.48 16 5 H 0.04 1.26 7.82 -52.49 -0.41 0.85 16 6 C 0.03 0.94 5.45 -17.82 -0.10 0.84 16 7 N -0.90 -26.93 13.56 55.43 0.75 -26.18 16 8 Si 1.07 25.26 29.91 -169.99 -5.08 20.18 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 N -0.52 -11.71 4.46 -220.15 -0.98 -12.69 16 13 C 0.07 1.49 4.77 -3.84 -0.02 1.47 16 14 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 15 C -0.11 -1.74 5.29 -26.61 -0.14 -1.88 16 16 C -0.08 -1.41 2.40 -90.54 -0.22 -1.63 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 18 C -0.15 -1.97 8.87 37.16 0.33 -1.64 16 19 C 0.08 1.56 1.39 -67.73 -0.09 1.47 16 20 H 0.02 0.46 6.65 -51.92 -0.35 0.12 16 21 C -0.14 -2.65 8.43 37.16 0.31 -2.34 16 22 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 23 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 24 H 0.04 0.86 6.59 -51.93 -0.34 0.51 16 25 H 0.28 8.44 6.93 -40.82 -0.28 8.16 16 26 H 0.08 2.00 6.75 -51.93 -0.35 1.65 16 27 H 0.01 0.21 6.69 -51.93 -0.35 -0.14 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.74 6.45 -51.93 -0.34 0.41 16 33 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.05 0.72 6.45 -51.93 -0.33 0.38 16 37 H 0.05 1.10 6.25 -51.93 -0.32 0.77 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -28.67 274.14 -7.57 -36.24 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -6.28 Total: -0.41 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -0.10 Total: -21.28 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.23 Total: -38.87 kcal Atomic # 14 Polarization: 25.26 SS G_CDS: -5.08 Total: 20.18 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.67 -7.57 -36.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224699802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.187 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds