Wall clock time and date at job start Mon Mar 30 2020 03:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47184 * 2 1 4 4 C 1.50706 * 109.47103 * 119.99832 * 2 1 3 5 5 H 1.07998 * 119.99679 * 25.79369 * 4 2 1 6 6 C 1.37871 * 119.99952 * 205.79257 * 4 2 1 7 7 N 1.31521 * 120.00010 * 353.22067 * 6 4 2 8 8 Si 1.86800 * 120.00070 * 173.22396 * 6 4 2 9 9 H 1.48505 * 109.47049 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47059 * 239.99748 * 8 6 4 11 11 H 1.48503 * 109.47113 * 119.99592 * 8 6 4 12 12 N 1.46899 * 109.47076 * 239.99613 * 2 1 3 13 13 C 1.46843 * 111.00094 * 295.79358 * 12 2 1 14 14 C 1.53038 * 109.52083 * 185.83701 * 13 12 2 15 15 C 1.53116 * 109.28072 * 300.82036 * 14 13 12 16 16 C 1.53114 * 109.16044 * 57.65315 * 15 14 13 17 17 H 1.09000 * 109.53698 * 62.30936 * 16 15 14 18 18 C 1.53002 * 109.50359 * 182.40697 * 16 15 14 19 19 C 1.46848 * 110.99787 * 60.00331 * 12 2 1 20 20 H 1.09010 * 109.46316 * 294.16534 * 19 12 2 21 21 C 1.52996 * 109.46367 * 54.14202 * 19 12 2 22 22 H 1.09005 * 109.46883 * 299.23232 * 1 2 3 23 23 H 1.09000 * 109.46750 * 59.23002 * 1 2 3 24 24 H 1.08998 * 109.46977 * 179.23443 * 1 2 3 25 25 H 0.96991 * 119.99957 * 354.62839 * 7 6 4 26 26 H 1.08995 * 109.46201 * 305.85072 * 13 12 2 27 27 H 1.08996 * 109.46643 * 65.82314 * 13 12 2 28 28 H 1.08999 * 109.50376 * 180.87646 * 14 13 12 29 29 H 1.09004 * 109.53744 * 60.78488 * 14 13 12 30 30 H 1.09001 * 109.52154 * 297.74583 * 15 14 13 31 31 H 1.09005 * 109.52304 * 177.56127 * 15 14 13 32 32 H 1.09001 * 109.47306 * 179.80625 * 18 16 15 33 33 H 1.09006 * 109.46856 * 299.80097 * 18 16 15 34 34 H 1.09000 * 109.47158 * 59.80275 * 18 16 15 35 35 H 1.08997 * 109.47425 * 60.00370 * 21 19 12 36 36 H 1.09003 * 109.47576 * 180.02562 * 21 19 12 37 37 H 1.09001 * 109.47305 * 300.00166 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 1.4184 -1.4577 1.7110 6 6 3.2757 -0.4062 1.7428 7 7 4.0775 0.4034 1.0860 8 14 3.8217 -1.1442 3.3697 9 1 2.7443 -2.0152 3.9045 10 1 4.1027 -0.0541 4.3381 11 1 5.0516 -1.9495 3.1601 12 7 2.0197 -0.6926 -1.1994 13 6 1.6327 -2.1090 -1.1840 14 6 2.2799 -2.8288 -2.3693 15 6 1.8216 -2.1693 -3.6729 16 6 2.1936 -0.6844 -3.6428 17 1 3.2770 -0.5812 -3.5824 18 6 1.6859 -0.0046 -4.9160 19 6 1.5489 -0.0267 -2.4206 20 1 0.4647 -0.1176 -2.4890 21 6 1.9344 1.4532 -2.3753 22 1 -0.3633 0.5019 0.8968 23 1 -0.3633 0.5258 -0.8830 24 1 -0.3633 -1.0276 -0.0137 25 1 3.8274 0.7247 0.2057 26 1 1.9683 -2.5671 -0.2537 27 1 0.5483 -2.1901 -1.2581 28 1 1.9800 -3.8768 -2.3666 29 1 3.3649 -2.7607 -2.2889 30 1 0.7410 -2.2723 -3.7729 31 1 2.3139 -2.6512 -4.5177 32 1 1.9479 1.0532 -4.8924 33 1 2.1455 -0.4734 -5.7861 34 1 0.6026 -0.1093 -4.9765 35 1 3.0183 1.5444 -2.3066 36 1 1.5846 1.9478 -3.2815 37 1 1.4744 1.9220 -1.5053 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224699802.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:47 Heat of formation + Delta-G solvation = -37.385969 kcal Electronic energy + Delta-G solvation = -15417.025314 eV Core-core repulsion = 13192.517122 eV Total energy + Delta-G solvation = -2224.508192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.59003 -36.56701 -33.97676 -33.88642 -30.80381 -28.71794 -26.85572 -26.53030 -24.53136 -22.13055 -21.72095 -20.10201 -18.52828 -16.67145 -16.25481 -15.73331 -15.62010 -15.26047 -15.05915 -14.67813 -13.93480 -13.72457 -13.45153 -13.09308 -12.88003 -12.81718 -12.73893 -12.60921 -12.44455 -12.30966 -11.94441 -11.79314 -11.68364 -11.42567 -11.05983 -10.86945 -10.43692 -10.36839 -8.71041 -8.44659 -6.20773 1.54371 1.62675 1.78348 2.61693 3.13338 3.59667 3.90120 3.93476 4.06866 4.24135 4.42918 4.48730 4.54669 4.57846 4.63501 4.67746 4.74128 4.76819 4.83698 4.91462 5.00325 5.03944 5.12737 5.13657 5.20852 5.30569 5.32602 5.38452 5.42189 5.56594 5.62524 6.01101 6.33176 6.68308 6.75992 6.97926 7.63457 8.93090 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.038041 B = 0.010432 C = 0.009820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.865897 B = 2683.486849 C = 2850.651670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.188 3.812 3 H 0.024 0.976 4 C -0.596 4.596 5 H 0.035 0.965 6 C -0.016 4.016 7 N -0.929 5.929 8 Si 1.111 2.889 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.285 1.285 12 N -0.538 5.538 13 C 0.073 3.927 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.083 4.083 17 H 0.055 0.945 18 C -0.138 4.138 19 C 0.080 3.920 20 H 0.026 0.974 21 C -0.137 4.137 22 H 0.043 0.957 23 H 0.045 0.955 24 H 0.039 0.961 25 H 0.269 0.731 26 H 0.050 0.950 27 H 0.013 0.987 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.080 0.920 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -2.942 -9.752 11.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.082 3.918 3 H 0.042 0.958 4 C -0.635 4.635 5 H 0.053 0.947 6 C -0.218 4.218 7 N -0.565 5.565 8 Si 0.935 3.065 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.212 1.212 12 N -0.263 5.263 13 C -0.056 4.056 14 C -0.151 4.151 15 C -0.142 4.142 16 C -0.102 4.102 17 H 0.073 0.927 18 C -0.195 4.195 19 C -0.028 4.028 20 H 0.043 0.957 21 C -0.195 4.195 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.031 0.969 28 H 0.094 0.906 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.475 -2.894 -8.646 9.757 hybrid contribution -1.986 0.094 -0.752 2.126 sum -5.461 -2.800 -9.398 11.225 Atomic orbital electron populations 1.22236 0.99612 0.99935 0.99782 1.19384 0.89599 0.94437 0.88385 0.95828 1.22093 1.04069 1.25443 1.11873 0.94676 1.26952 0.93534 0.95225 1.06063 1.70709 1.38885 1.32028 1.14863 0.83019 0.75567 0.75759 0.72195 1.20161 1.20630 1.21178 1.62519 1.60248 1.01845 1.01656 1.21731 0.95641 0.89827 0.98365 1.21588 1.00055 0.98929 0.94537 1.21577 1.00814 0.94787 0.97035 1.21172 0.99625 0.95293 0.94146 0.92675 1.21807 1.01155 1.00586 0.95989 1.21668 0.95796 0.94150 0.91197 0.95651 1.21853 1.00865 0.95558 1.01193 0.93795 0.93638 0.94145 0.92035 0.93103 0.96851 0.90585 0.93293 0.92041 0.90308 0.92226 0.91271 0.92408 0.94012 0.90123 0.94515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.83 8.44 71.98 0.61 -6.23 16 2 C 0.19 9.48 1.37 44.17 0.06 9.54 16 3 H 0.02 1.32 5.20 -2.39 -0.01 1.31 16 4 C -0.60 -33.50 6.79 25.60 0.17 -33.33 16 5 H 0.03 1.99 7.82 -2.91 -0.02 1.97 16 6 C -0.02 -0.93 5.45 84.65 0.46 -0.47 16 7 N -0.93 -57.10 13.56 21.45 0.29 -56.81 16 8 Si 1.11 51.44 29.91 68.60 2.05 53.49 16 9 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 12 N -0.54 -24.46 4.46 -850.41 -3.79 -28.26 16 13 C 0.07 3.06 4.77 86.33 0.41 3.47 16 14 C -0.11 -3.85 6.09 30.65 0.19 -3.66 16 15 C -0.10 -2.98 5.29 30.67 0.16 -2.82 16 16 C -0.08 -2.59 2.40 -10.74 -0.03 -2.62 16 17 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 18 C -0.14 -3.24 8.87 71.98 0.64 -2.60 16 19 C 0.08 2.99 1.39 44.93 0.06 3.06 16 20 H 0.03 0.95 6.65 -2.38 -0.02 0.94 16 21 C -0.14 -5.01 8.43 71.98 0.61 -4.40 16 22 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 23 H 0.04 1.78 6.54 -2.39 -0.02 1.76 16 24 H 0.04 1.72 6.59 -2.39 -0.02 1.71 16 25 H 0.27 16.79 6.93 -92.71 -0.64 16.15 16 26 H 0.05 2.45 6.75 -2.39 -0.02 2.43 16 27 H 0.01 0.55 6.69 -2.39 -0.02 0.53 16 28 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 30 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.06 1.36 6.45 -2.39 -0.02 1.35 16 33 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 2.34 6.45 -2.39 -0.02 2.33 16 37 H 0.04 1.45 6.25 -2.39 -0.01 1.43 16 Total: -1.00 -62.70 274.14 3.04 -59.67 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 1.14 Total: 11.98 kcal Atomic # 6 Polarization: -43.41 SS G_CDS: 3.35 Total: -40.07 kcal Atomic # 7 Polarization: -81.56 SS G_CDS: -3.50 Total: -85.07 kcal Atomic # 14 Polarization: 51.44 SS G_CDS: 2.05 Total: 53.49 kcal Total: -62.70 3.04 -59.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224699802.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.282 kcal (2) G-P(sol) polarization free energy of solvation -62.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds