Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46961 * 2 1 4 4 C 1.50698 * 109.47142 * 240.00017 * 2 1 3 5 5 H 1.08001 * 120.00426 * 244.96621 * 4 2 1 6 6 C 1.37884 * 120.00070 * 64.96700 * 4 2 1 7 7 N 1.31512 * 120.00077 * 196.09038 * 6 4 2 8 8 Si 1.86804 * 119.99590 * 16.09059 * 6 4 2 9 9 H 1.48493 * 109.47141 * 95.70189 * 8 6 4 10 10 H 1.48502 * 109.46942 * 215.70147 * 8 6 4 11 11 H 1.48497 * 109.47171 * 335.69611 * 8 6 4 12 12 N 1.46899 * 109.46931 * 120.00409 * 2 1 3 13 13 C 1.46843 * 111.00183 * 62.95136 * 12 2 1 14 14 C 1.53044 * 109.52246 * 185.83615 * 13 12 2 15 15 C 1.53111 * 109.28103 * 300.82492 * 14 13 12 16 16 C 1.53123 * 109.15311 * 57.65786 * 15 14 13 17 17 H 1.09001 * 109.51077 * 62.27968 * 16 15 14 18 18 C 1.53004 * 109.49371 * 182.39316 * 16 15 14 19 19 C 1.46846 * 110.99930 * 187.16348 * 12 2 1 20 20 H 1.08994 * 109.46485 * 294.16365 * 19 12 2 21 21 C 1.53001 * 109.46052 * 54.14305 * 19 12 2 22 22 H 1.08991 * 109.47206 * 299.54781 * 1 2 3 23 23 H 1.09002 * 109.46905 * 59.54638 * 1 2 3 24 24 H 1.09004 * 109.46793 * 179.54297 * 1 2 3 25 25 H 0.97007 * 119.99670 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.46873 * 305.85665 * 13 12 2 27 27 H 1.09001 * 109.46238 * 65.84142 * 13 12 2 28 28 H 1.08998 * 109.49730 * 60.76387 * 14 13 12 29 29 H 1.08997 * 109.50201 * 180.84052 * 14 13 12 30 30 H 1.08998 * 109.52636 * 177.55997 * 15 14 13 31 31 H 1.09007 * 109.52540 * 297.68402 * 15 14 13 32 32 H 1.09001 * 109.46988 * 179.79591 * 18 16 15 33 33 H 1.09001 * 109.47332 * 299.80169 * 18 16 15 34 34 H 1.09003 * 109.46970 * 59.79958 * 18 16 15 35 35 H 1.08996 * 109.47448 * 54.22435 * 21 19 12 36 36 H 1.09000 * 109.47035 * 294.22422 * 21 19 12 37 37 H 1.09004 * 109.47084 * 174.22922 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5856 -1.6329 -1.1335 6 6 1.7858 -0.1826 -2.4802 7 7 1.9328 -0.9318 -3.5510 8 14 1.2431 1.5965 -2.6521 9 1 2.4258 2.4501 -2.9309 10 1 0.2740 1.7124 -3.7714 11 1 0.5978 2.0413 -1.3908 12 7 2.0197 -0.6926 1.1994 13 6 1.6073 -2.1019 1.1985 14 6 2.0076 -2.7528 2.5246 15 6 3.5245 -2.6455 2.7029 16 6 3.9333 -1.1707 2.6518 17 1 3.4633 -0.6339 3.4758 18 6 5.4546 -1.0582 2.7695 19 6 3.4775 -0.5659 1.3219 20 1 3.9585 -1.0944 0.4989 21 6 3.8665 0.9131 1.2747 22 1 -0.3633 0.5067 0.8939 23 1 -0.3633 0.5209 -0.8859 24 1 -0.3633 -1.0277 -0.0082 25 1 1.7590 -0.5605 -4.4302 26 1 0.5262 -2.1640 1.0752 27 1 2.0972 -2.6231 0.3760 28 1 1.5074 -2.2408 3.3466 29 1 1.7147 -3.8026 2.5176 30 1 3.8089 -3.0691 3.6660 31 1 4.0249 -3.1912 1.9029 32 1 5.7455 -0.0085 2.7294 33 1 5.7787 -1.4892 3.7168 34 1 5.9235 -1.5968 1.9460 35 1 3.3066 1.4604 2.0329 36 1 3.6355 1.3182 0.2895 37 1 4.9345 1.0143 1.4679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224699850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = -9.983346 kcal Electronic energy + Delta-G solvation = -15360.094629 eV Core-core repulsion = 13136.774704 eV Total energy + Delta-G solvation = -2223.319925 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.96358 -34.84119 -32.51104 -32.04398 -29.66108 -27.16411 -25.53080 -24.93480 -22.75951 -20.67109 -19.45546 -18.82509 -16.49537 -15.27273 -14.79337 -14.26322 -14.07867 -13.51380 -13.37488 -12.69612 -12.60100 -12.23161 -12.01654 -11.73123 -11.37806 -11.36618 -11.22541 -10.94155 -10.78837 -10.53855 -10.21671 -10.17951 -9.98482 -9.64758 -9.52801 -9.39123 -9.13644 -8.43576 -7.04324 -6.11367 -4.05521 3.27275 3.37545 3.41056 4.42083 4.87633 5.19614 5.23312 5.30181 5.41408 5.65239 5.92161 5.94399 5.98918 6.01579 6.12628 6.25358 6.28802 6.35325 6.36635 6.45454 6.50555 6.58005 6.66172 6.69134 6.79173 6.82749 6.87900 6.94895 7.07682 7.25365 7.33598 7.66463 8.23402 8.30312 8.50364 8.96112 9.56809 11.01746 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.011096 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.226075 B = 2522.810326 C = 2725.674348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.174 3.826 3 H 0.040 0.960 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.861 3.139 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.252 1.252 12 N -0.526 5.526 13 C 0.060 3.940 14 C -0.117 4.117 15 C -0.112 4.112 16 C -0.085 4.085 17 H 0.069 0.931 18 C -0.146 4.146 19 C 0.095 3.905 20 H 0.047 0.953 21 C -0.145 4.145 22 H 0.029 0.971 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.262 0.738 26 H 0.067 0.933 27 H 0.042 0.958 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 0.260 11.078 11.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.066 3.934 3 H 0.058 0.942 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.124 4.124 7 N -0.530 5.530 8 Si 0.688 3.312 9 H -0.208 1.208 10 H -0.214 1.214 11 H -0.176 1.176 12 N -0.251 5.251 13 C -0.069 4.069 14 C -0.155 4.155 15 C -0.150 4.150 16 C -0.104 4.104 17 H 0.088 0.912 18 C -0.204 4.204 19 C -0.014 4.014 20 H 0.065 0.935 21 C -0.202 4.202 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.249 0.480 11.282 11.514 hybrid contribution 0.077 0.478 -1.163 1.260 sum 2.326 0.958 10.119 10.427 Atomic orbital electron populations 1.22121 0.98432 1.00255 0.98642 1.19689 0.91613 0.94910 0.87167 0.94217 1.21559 1.36523 1.10281 0.89964 0.90885 1.24926 0.94399 0.97275 0.95850 1.70013 1.49086 1.35424 0.98440 0.87192 0.78764 0.86759 0.78457 1.20807 1.21414 1.17611 1.62338 1.10220 1.12310 1.40188 1.21923 1.00295 0.89542 0.95099 1.21625 0.95597 0.99327 0.98945 1.21597 0.96466 0.96388 1.00538 1.21198 0.94775 0.95754 0.98646 0.91216 1.21878 0.96048 1.01598 1.00868 1.21348 0.89427 0.95574 0.95064 0.93534 1.21908 0.99671 0.96388 1.02232 0.95199 0.93766 0.93474 0.92836 0.91415 0.94003 0.92093 0.92687 0.92974 0.92517 0.92472 0.93374 0.92938 0.92953 0.91946 0.93149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.41 37.16 0.31 -2.73 16 2 C 0.17 4.09 1.54 -68.86 -0.11 3.98 16 3 H 0.04 0.96 4.47 -51.93 -0.23 0.73 16 4 C -0.54 -14.89 7.63 -34.44 -0.26 -15.15 16 5 H 0.07 2.20 6.10 -52.49 -0.32 1.88 16 6 C 0.08 2.22 5.35 -17.82 -0.10 2.13 16 7 N -0.89 -27.01 13.96 55.43 0.77 -26.23 16 8 Si 0.86 21.15 25.84 -169.99 -4.39 16.75 16 9 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.25 -5.86 5.48 56.52 0.31 -5.55 16 12 N -0.53 -10.94 4.46 -220.15 -0.98 -11.93 16 13 C 0.06 1.18 4.79 -3.83 -0.02 1.16 16 14 C -0.12 -1.87 6.09 -26.65 -0.16 -2.03 16 15 C -0.11 -1.70 5.29 -26.61 -0.14 -1.84 16 16 C -0.08 -1.33 2.40 -90.54 -0.22 -1.55 16 17 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 18 C -0.15 -1.96 8.88 37.16 0.33 -1.63 16 19 C 0.09 1.81 1.65 -67.72 -0.11 1.70 16 20 H 0.05 1.03 7.21 -51.93 -0.37 0.66 16 21 C -0.14 -2.60 8.39 37.16 0.31 -2.28 16 22 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 23 H 0.04 1.01 5.04 -51.93 -0.26 0.74 16 24 H 0.05 1.03 6.37 -51.93 -0.33 0.70 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.07 1.35 6.11 -51.93 -0.32 1.03 16 27 H 0.04 0.94 6.43 -51.93 -0.33 0.61 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.73 6.33 -51.93 -0.33 0.40 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.25 6.52 -51.93 -0.34 0.92 16 37 H 0.05 0.78 6.17 -51.93 -0.32 0.46 16 LS Contribution 266.70 15.07 4.02 4.02 Total: -1.00 -28.80 266.70 -6.93 -35.73 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -6.19 Total: -0.10 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.16 Total: -18.24 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.21 Total: -38.16 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.39 Total: 16.75 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -28.80 -6.93 -35.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224699850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.744 kcal (2) G-P(sol) polarization free energy of solvation -28.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds