Wall clock time and date at job start Mon Mar 30 2020 03:05:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46961 * 2 1 4 4 C 1.50698 * 109.47142 * 240.00017 * 2 1 3 5 5 H 1.08001 * 120.00426 * 244.96621 * 4 2 1 6 6 C 1.37884 * 120.00070 * 64.96700 * 4 2 1 7 7 N 1.31512 * 120.00077 * 196.09038 * 6 4 2 8 8 Si 1.86804 * 119.99590 * 16.09059 * 6 4 2 9 9 H 1.48493 * 109.47141 * 95.70189 * 8 6 4 10 10 H 1.48502 * 109.46942 * 215.70147 * 8 6 4 11 11 H 1.48497 * 109.47171 * 335.69611 * 8 6 4 12 12 N 1.46899 * 109.46931 * 120.00409 * 2 1 3 13 13 C 1.46843 * 111.00183 * 62.95136 * 12 2 1 14 14 C 1.53044 * 109.52246 * 185.83615 * 13 12 2 15 15 C 1.53111 * 109.28103 * 300.82492 * 14 13 12 16 16 C 1.53123 * 109.15311 * 57.65786 * 15 14 13 17 17 H 1.09001 * 109.51077 * 62.27968 * 16 15 14 18 18 C 1.53004 * 109.49371 * 182.39316 * 16 15 14 19 19 C 1.46846 * 110.99930 * 187.16348 * 12 2 1 20 20 H 1.08994 * 109.46485 * 294.16365 * 19 12 2 21 21 C 1.53001 * 109.46052 * 54.14305 * 19 12 2 22 22 H 1.08991 * 109.47206 * 299.54781 * 1 2 3 23 23 H 1.09002 * 109.46905 * 59.54638 * 1 2 3 24 24 H 1.09004 * 109.46793 * 179.54297 * 1 2 3 25 25 H 0.97007 * 119.99670 * 179.97438 * 7 6 4 26 26 H 1.08991 * 109.46873 * 305.85665 * 13 12 2 27 27 H 1.09001 * 109.46238 * 65.84142 * 13 12 2 28 28 H 1.08998 * 109.49730 * 60.76387 * 14 13 12 29 29 H 1.08997 * 109.50201 * 180.84052 * 14 13 12 30 30 H 1.08998 * 109.52636 * 177.55997 * 15 14 13 31 31 H 1.09007 * 109.52540 * 297.68402 * 15 14 13 32 32 H 1.09001 * 109.46988 * 179.79591 * 18 16 15 33 33 H 1.09001 * 109.47332 * 299.80169 * 18 16 15 34 34 H 1.09003 * 109.46970 * 59.79958 * 18 16 15 35 35 H 1.08996 * 109.47448 * 54.22435 * 21 19 12 36 36 H 1.09000 * 109.47035 * 294.22422 * 21 19 12 37 37 H 1.09004 * 109.47084 * 174.22922 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5856 -1.6329 -1.1335 6 6 1.7858 -0.1826 -2.4802 7 7 1.9328 -0.9318 -3.5510 8 14 1.2431 1.5965 -2.6521 9 1 2.4258 2.4501 -2.9309 10 1 0.2740 1.7124 -3.7714 11 1 0.5978 2.0413 -1.3908 12 7 2.0197 -0.6926 1.1994 13 6 1.6073 -2.1019 1.1985 14 6 2.0076 -2.7528 2.5246 15 6 3.5245 -2.6455 2.7029 16 6 3.9333 -1.1707 2.6518 17 1 3.4633 -0.6339 3.4758 18 6 5.4546 -1.0582 2.7695 19 6 3.4775 -0.5659 1.3219 20 1 3.9585 -1.0944 0.4989 21 6 3.8665 0.9131 1.2747 22 1 -0.3633 0.5067 0.8939 23 1 -0.3633 0.5209 -0.8859 24 1 -0.3633 -1.0277 -0.0082 25 1 1.7590 -0.5605 -4.4302 26 1 0.5262 -2.1640 1.0752 27 1 2.0972 -2.6231 0.3760 28 1 1.5074 -2.2408 3.3466 29 1 1.7147 -3.8026 2.5176 30 1 3.8089 -3.0691 3.6660 31 1 4.0249 -3.1912 1.9029 32 1 5.7455 -0.0085 2.7294 33 1 5.7787 -1.4892 3.7168 34 1 5.9235 -1.5968 1.9460 35 1 3.3066 1.4604 2.0329 36 1 3.6355 1.3182 0.2895 37 1 4.9345 1.0143 1.4679 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224699850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:50 Heat of formation + Delta-G solvation = -28.846757 kcal Electronic energy + Delta-G solvation = -15360.912608 eV Core-core repulsion = 13136.774704 eV Total energy + Delta-G solvation = -2224.137904 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.50220 -36.49576 -34.19482 -33.80994 -31.35293 -28.59348 -27.20327 -26.72389 -24.33502 -22.08938 -21.08670 -20.49560 -18.50626 -17.06500 -16.36862 -16.00694 -15.45074 -15.14782 -14.86044 -14.47584 -14.20100 -14.03076 -13.35686 -13.22896 -13.05080 -12.81179 -12.68969 -12.59007 -12.43021 -12.18411 -11.88541 -11.64856 -11.57999 -11.41593 -11.30237 -10.91793 -10.76126 -10.55947 -8.85488 -8.32230 -6.29953 1.31186 1.35705 1.45990 2.33886 3.03749 3.30057 3.94322 4.00411 4.08580 4.31723 4.51704 4.58723 4.61697 4.70863 4.76114 4.78262 4.86750 4.89214 4.97832 5.01946 5.06126 5.12549 5.18000 5.23957 5.26543 5.30416 5.38099 5.43249 5.52862 5.55433 5.62725 5.71522 6.23606 6.46471 6.62190 6.77414 7.36029 8.84791 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.036297 B = 0.011096 C = 0.010270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.226075 B = 2522.810326 C = 2725.674348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 H 0.042 0.958 4 C -0.537 4.537 5 H 0.028 0.972 6 C 0.020 3.980 7 N -0.944 5.944 8 Si 0.925 3.075 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.226 1.226 12 N -0.519 5.519 13 C 0.060 3.940 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.079 4.079 17 H 0.082 0.918 18 C -0.142 4.142 19 C 0.090 3.910 20 H 0.003 0.997 21 C -0.141 4.141 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.041 0.959 25 H 0.263 0.737 26 H 0.063 0.937 27 H 0.000 1.000 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.039 0.961 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.034 0.966 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 1.591 13.847 14.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.065 3.935 3 H 0.060 0.940 4 C -0.576 4.576 5 H 0.046 0.954 6 C -0.178 4.178 7 N -0.583 5.583 8 Si 0.749 3.251 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.149 1.149 12 N -0.242 5.242 13 C -0.068 4.068 14 C -0.147 4.147 15 C -0.150 4.150 16 C -0.098 4.098 17 H 0.100 0.900 18 C -0.200 4.200 19 C -0.019 4.019 20 H 0.021 0.979 21 C -0.198 4.198 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.018 0.982 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.058 0.942 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.077 1.811 14.082 14.349 hybrid contribution 0.180 -0.044 -2.019 2.028 sum 2.258 1.767 12.062 12.398 Atomic orbital electron populations 1.22039 0.97085 1.00340 0.99659 1.19642 0.92626 0.94702 0.86499 0.94049 1.21758 1.35206 1.08694 0.91893 0.95421 1.25781 0.94970 1.01670 0.95415 1.70154 1.51488 1.37599 0.99097 0.86175 0.78533 0.81019 0.79418 1.20471 1.21294 1.14892 1.62435 1.11359 1.12497 1.37955 1.21947 0.99562 0.89004 0.96310 1.21582 0.96473 1.00046 0.96562 1.21623 0.95552 0.96118 1.01664 1.21177 0.96461 0.95812 0.96323 0.89952 1.21850 0.94060 1.02256 1.01810 1.21484 0.88009 0.96433 0.95944 0.97905 1.21880 1.01603 0.95255 1.01052 0.92448 0.94338 0.93978 0.92804 0.91900 0.98202 0.90511 0.91013 0.89633 0.94237 0.91676 0.90747 0.94128 0.91417 0.94736 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.76 8.41 71.98 0.61 -5.16 16 2 C 0.17 8.14 1.54 44.17 0.07 8.21 16 3 H 0.04 1.95 4.47 -2.39 -0.01 1.94 16 4 C -0.54 -30.51 7.63 25.60 0.20 -30.31 16 5 H 0.03 1.79 6.10 -2.91 -0.02 1.77 16 6 C 0.02 1.15 5.35 84.66 0.45 1.60 16 7 N -0.94 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.92 43.89 25.84 68.60 1.77 45.66 16 9 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 10 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 11 H -0.23 -9.72 5.48 99.48 0.55 -9.18 16 12 N -0.52 -21.34 4.46 -850.41 -3.79 -25.13 16 13 C 0.06 2.41 4.79 86.33 0.41 2.82 16 14 C -0.11 -3.26 6.09 30.65 0.19 -3.08 16 15 C -0.11 -3.14 5.29 30.67 0.16 -2.98 16 16 C -0.08 -2.28 2.40 -10.74 -0.03 -2.31 16 17 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.14 -3.42 8.88 71.98 0.64 -2.78 16 19 C 0.09 3.42 1.65 44.94 0.07 3.49 16 20 H 0.00 0.13 7.21 -2.39 -0.02 0.12 16 21 C -0.14 -4.84 8.39 71.98 0.60 -4.24 16 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.04 1.68 5.04 -2.39 -0.01 1.67 16 24 H 0.04 1.82 6.37 -2.38 -0.02 1.81 16 25 H 0.26 15.57 8.31 -92.70 -0.77 14.80 16 26 H 0.06 2.52 6.11 -2.39 -0.01 2.51 16 27 H 0.00 -0.02 6.43 -2.39 -0.02 -0.03 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.06 1.46 6.33 -2.39 -0.02 1.44 16 33 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.03 1.36 6.52 -2.39 -0.02 1.34 16 37 H 0.07 2.17 6.17 -2.39 -0.01 2.16 16 Total: -1.00 -64.69 266.70 2.52 -62.17 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.87 Total: 11.18 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 3.38 Total: -34.72 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.49 Total: -84.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.77 Total: 45.66 kcal Total: -64.69 2.52 -62.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224699850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.323 kcal (2) G-P(sol) polarization free energy of solvation -64.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds