Wall clock time and date at job start Mon Mar 30 2020 03:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.50698 * 109.46766 * 240.00843 * 2 1 3 5 5 H 1.08005 * 119.99776 * 239.99185 * 4 2 1 6 6 C 1.37880 * 120.00481 * 59.99534 * 4 2 1 7 7 N 1.31509 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99844 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47155 * 90.00002 * 8 6 4 10 10 H 1.48500 * 109.46971 * 209.99931 * 8 6 4 11 11 H 1.48492 * 109.47126 * 329.99561 * 8 6 4 12 12 N 1.46897 * 109.47602 * 120.00432 * 2 1 3 13 13 C 1.46844 * 111.00090 * 64.20878 * 12 2 1 14 14 C 1.53035 * 109.52494 * 174.16001 * 13 12 2 15 15 H 1.08999 * 109.50365 * 299.24296 * 14 13 12 16 16 C 1.52998 * 109.50596 * 179.12168 * 14 13 12 17 17 C 1.53124 * 109.27794 * 59.18054 * 14 13 12 18 18 C 1.53126 * 109.15878 * 302.34791 * 17 14 13 19 19 H 1.08992 * 109.50023 * 297.71261 * 18 17 14 20 20 C 1.53002 * 109.50230 * 177.63159 * 18 17 14 21 21 C 1.46854 * 110.99665 * 300.00202 * 12 2 1 22 22 H 1.08992 * 109.47631 * 59.99950 * 1 2 3 23 23 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46805 * 299.99180 * 1 2 3 25 25 H 0.96998 * 119.99653 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46133 * 294.17882 * 13 12 2 27 27 H 1.09002 * 109.46165 * 54.15521 * 13 12 2 28 28 H 1.09006 * 109.47097 * 300.19791 * 16 14 13 29 29 H 1.08995 * 109.46834 * 60.19687 * 16 14 13 30 30 H 1.08998 * 109.47092 * 180.19818 * 16 14 13 31 31 H 1.08998 * 109.52745 * 182.44119 * 17 14 13 32 32 H 1.08999 * 109.52030 * 62.24575 * 17 14 13 33 33 H 1.09007 * 109.46993 * 59.99972 * 20 18 17 34 34 H 1.08993 * 109.47074 * 179.97438 * 20 18 17 35 35 H 1.09001 * 109.46908 * 300.00267 * 20 18 17 36 36 H 1.08994 * 109.46310 * 65.82535 * 21 12 2 37 37 H 1.09004 * 109.45281 * 305.84691 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4863 -0.1410 -5.1124 11 1 3.6291 -1.7579 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 1.6329 -2.1090 1.1840 14 6 2.2803 -2.8289 2.3691 15 1 3.3651 -2.7600 2.2883 16 6 1.8594 -4.2999 2.3652 17 6 1.8219 -2.1695 3.6728 18 6 2.1939 -0.6844 3.6427 19 1 3.2773 -0.5818 3.5819 20 6 1.6870 -0.0049 4.9164 21 6 1.5489 -0.0267 2.4206 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7085 1.1614 -3.4843 26 1 0.5485 -2.1901 1.2581 27 1 1.9686 -2.5671 0.2536 28 1 0.7743 -4.3675 2.4443 29 1 2.1859 -4.7687 1.4370 30 1 2.3180 -4.8112 3.2115 31 1 2.3143 -2.6513 4.5175 32 1 0.7414 -2.2724 3.7727 33 1 2.1446 -0.4763 5.7863 34 1 1.9525 1.0520 4.8946 35 1 0.6034 -0.1067 4.9759 36 1 0.4649 -0.1177 2.4889 37 1 1.8237 1.0276 2.3883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224812053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:39 Heat of formation + Delta-G solvation = -20.161486 kcal Electronic energy + Delta-G solvation = -15029.309456 eV Core-core repulsion = 12805.548173 eV Total energy + Delta-G solvation = -2223.761282 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.84081 -34.90448 -33.03723 -32.14337 -28.40606 -26.31128 -26.20296 -24.97819 -23.31881 -20.33757 -19.88665 -18.72057 -16.09522 -15.23147 -14.57213 -14.36848 -14.06049 -13.59207 -13.50949 -12.53195 -12.34419 -12.28188 -12.23609 -11.75934 -11.58307 -11.20246 -11.05919 -10.91697 -10.73845 -10.58162 -10.34908 -10.16628 -10.09297 -9.94947 -9.62963 -9.35442 -8.75979 -8.36064 -7.02640 -5.98049 -4.01663 3.32212 3.38823 3.42944 4.43724 4.93336 5.10848 5.27816 5.33392 5.36617 5.47233 5.75244 5.85581 5.90316 5.98715 6.03919 6.14014 6.18129 6.22866 6.29185 6.35947 6.44180 6.54278 6.62207 6.70991 6.78850 6.92848 6.93666 6.97267 7.20669 7.60572 7.78649 7.87819 8.19020 8.46749 8.68820 9.04812 9.63298 11.09119 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037480 B = 0.009379 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.882802 B = 2984.743473 C = 3476.864636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.895 3.105 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.533 5.533 13 C 0.069 3.931 14 C -0.094 4.094 15 H 0.072 0.928 16 C -0.143 4.143 17 C -0.105 4.105 18 C -0.091 4.091 19 H 0.073 0.927 20 C -0.143 4.143 21 C 0.061 3.939 22 H 0.087 0.913 23 H 0.027 0.973 24 H 0.008 0.992 25 H 0.259 0.741 26 H 0.021 0.979 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.025 0.975 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.525 -4.849 10.651 11.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.257 5.257 13 C -0.059 4.059 14 C -0.113 4.113 15 H 0.090 0.910 16 C -0.201 4.201 17 C -0.142 4.142 18 C -0.110 4.110 19 H 0.091 0.909 20 C -0.201 4.201 21 C -0.068 4.068 22 H 0.105 0.895 23 H 0.046 0.954 24 H 0.027 0.973 25 H 0.069 0.931 26 H 0.039 0.961 27 H 0.101 0.899 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.043 0.957 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.964 -4.695 10.489 11.532 hybrid contribution -0.715 -0.399 -0.897 1.215 sum 0.249 -5.094 9.592 10.863 Atomic orbital electron populations 1.22390 1.01023 0.99138 1.00449 1.19276 0.89639 0.94596 0.86029 0.94332 1.21166 1.30529 1.12403 0.89797 0.91893 1.24934 0.95275 0.95117 0.98985 1.69890 1.37108 1.23060 1.23314 0.86547 0.79240 0.79295 0.82634 1.20857 1.21301 1.19847 1.62209 1.59646 1.01619 1.02200 1.21985 0.96405 0.89864 0.97641 1.21246 1.00937 0.93868 0.95266 0.90952 1.21769 1.00902 0.96240 1.01150 1.21651 1.00271 0.95224 0.97095 1.21185 1.00847 0.94720 0.94243 0.90863 1.21785 1.00793 1.00329 0.97211 1.22025 0.96464 0.97904 0.90427 0.89477 0.95425 0.97295 0.93064 0.96114 0.89883 0.93184 0.92686 0.93325 0.92903 0.92819 0.93149 0.92849 0.93138 0.95726 0.91964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.28 37.16 0.31 -3.93 16 2 C 0.21 5.41 2.41 -68.87 -0.17 5.24 16 3 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 4 C -0.50 -13.79 7.86 -34.44 -0.27 -14.06 16 5 H 0.06 1.73 6.40 -52.48 -0.34 1.40 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.72 11.32 55.43 0.63 -25.09 16 8 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 12 N -0.53 -11.73 4.67 -228.08 -1.07 -12.80 16 13 C 0.07 1.40 4.03 -3.84 -0.02 1.38 16 14 C -0.09 -1.53 2.88 -90.54 -0.26 -1.79 16 15 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 16 C -0.14 -1.96 9.20 37.16 0.34 -1.62 16 17 C -0.10 -1.54 4.57 -26.60 -0.12 -1.66 16 18 C -0.09 -1.41 2.88 -90.53 -0.26 -1.67 16 19 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 20 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 21 C 0.06 1.14 4.17 -3.83 -0.02 1.13 16 22 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 23 H 0.03 0.66 6.63 -51.93 -0.34 0.32 16 24 H 0.01 0.19 6.54 -51.92 -0.34 -0.15 16 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 26 H 0.02 0.43 6.71 -51.93 -0.35 0.08 16 27 H 0.08 1.83 6.02 -51.93 -0.31 1.52 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.02 0.48 6.63 -51.93 -0.34 0.14 16 37 H 0.06 1.19 8.12 -51.93 -0.42 0.77 16 LS Contribution 278.64 15.07 4.20 4.20 Total: -1.00 -27.98 278.64 -8.02 -36.00 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -6.55 Total: -1.82 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -0.21 Total: -16.95 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.44 Total: -37.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.98 -8.02 -36.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224812053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.838 kcal (2) G-P(sol) polarization free energy of solvation -27.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds