Wall clock time and date at job start Mon Mar 30 2020 03:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46741 * 2 1 4 4 C 1.50698 * 109.46766 * 240.00843 * 2 1 3 5 5 H 1.08005 * 119.99776 * 239.99185 * 4 2 1 6 6 C 1.37880 * 120.00481 * 59.99534 * 4 2 1 7 7 N 1.31509 * 119.99779 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99844 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47155 * 90.00002 * 8 6 4 10 10 H 1.48500 * 109.46971 * 209.99931 * 8 6 4 11 11 H 1.48492 * 109.47126 * 329.99561 * 8 6 4 12 12 N 1.46897 * 109.47602 * 120.00432 * 2 1 3 13 13 C 1.46844 * 111.00090 * 64.20878 * 12 2 1 14 14 C 1.53035 * 109.52494 * 174.16001 * 13 12 2 15 15 H 1.08999 * 109.50365 * 299.24296 * 14 13 12 16 16 C 1.52998 * 109.50596 * 179.12168 * 14 13 12 17 17 C 1.53124 * 109.27794 * 59.18054 * 14 13 12 18 18 C 1.53126 * 109.15878 * 302.34791 * 17 14 13 19 19 H 1.08992 * 109.50023 * 297.71261 * 18 17 14 20 20 C 1.53002 * 109.50230 * 177.63159 * 18 17 14 21 21 C 1.46854 * 110.99665 * 300.00202 * 12 2 1 22 22 H 1.08992 * 109.47631 * 59.99950 * 1 2 3 23 23 H 1.09004 * 109.46741 * 180.02562 * 1 2 3 24 24 H 1.09009 * 109.46805 * 299.99180 * 1 2 3 25 25 H 0.96998 * 119.99653 * 179.97438 * 7 6 4 26 26 H 1.09002 * 109.46133 * 294.17882 * 13 12 2 27 27 H 1.09002 * 109.46165 * 54.15521 * 13 12 2 28 28 H 1.09006 * 109.47097 * 300.19791 * 16 14 13 29 29 H 1.08995 * 109.46834 * 60.19687 * 16 14 13 30 30 H 1.08998 * 109.47092 * 180.19818 * 16 14 13 31 31 H 1.08998 * 109.52745 * 182.44119 * 17 14 13 32 32 H 1.08999 * 109.52030 * 62.24575 * 17 14 13 33 33 H 1.09007 * 109.46993 * 59.99972 * 20 18 17 34 34 H 1.08993 * 109.47074 * 179.97438 * 20 18 17 35 35 H 1.09001 * 109.46908 * 300.00267 * 20 18 17 36 36 H 1.08994 * 109.46310 * 65.82535 * 21 12 2 37 37 H 1.09004 * 109.45281 * 305.84691 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3212 -1.1200 -4.0081 9 1 1.3425 -2.1614 -4.4120 10 1 2.4863 -0.1410 -5.1124 11 1 3.6291 -1.7579 -3.7125 12 7 2.0198 -0.6925 1.1993 13 6 1.6329 -2.1090 1.1840 14 6 2.2803 -2.8289 2.3691 15 1 3.3651 -2.7600 2.2883 16 6 1.8594 -4.2999 2.3652 17 6 1.8219 -2.1695 3.6728 18 6 2.1939 -0.6844 3.6427 19 1 3.2773 -0.5818 3.5819 20 6 1.6870 -0.0049 4.9164 21 6 1.5489 -0.0267 2.4206 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7085 1.1614 -3.4843 26 1 0.5485 -2.1901 1.2581 27 1 1.9686 -2.5671 0.2536 28 1 0.7743 -4.3675 2.4443 29 1 2.1859 -4.7687 1.4370 30 1 2.3180 -4.8112 3.2115 31 1 2.3143 -2.6513 4.5175 32 1 0.7414 -2.2724 3.7727 33 1 2.1446 -0.4763 5.7863 34 1 1.9525 1.0520 4.8946 35 1 0.6034 -0.1067 4.9759 36 1 0.4649 -0.1177 2.4889 37 1 1.8237 1.0276 2.3883 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224812053.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:38 Heat of formation + Delta-G solvation = -36.678114 kcal Electronic energy + Delta-G solvation = -15030.025670 eV Core-core repulsion = 12805.548173 eV Total energy + Delta-G solvation = -2224.477497 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.37517 -36.62752 -34.31574 -34.09082 -30.28716 -27.84709 -27.42738 -26.86847 -25.02139 -21.63833 -21.60779 -20.25585 -18.17725 -17.03359 -16.08301 -16.01104 -15.49586 -15.20893 -15.02881 -14.33349 -13.78945 -13.70427 -13.50341 -13.23872 -12.96310 -12.86683 -12.72286 -12.59794 -12.37951 -12.27809 -12.16855 -11.91566 -11.56211 -11.38374 -11.09301 -10.94863 -10.71095 -10.50321 -8.80902 -8.11874 -6.22885 1.40963 1.41774 1.52706 2.41968 3.17013 3.37389 3.86943 4.02433 4.07354 4.20941 4.50300 4.58463 4.70683 4.71632 4.74773 4.79770 4.85614 4.89090 4.91790 4.94323 5.05951 5.10717 5.15426 5.21990 5.28366 5.37993 5.43394 5.47332 5.59557 5.63681 5.72529 5.80956 6.18991 6.51909 6.81029 6.92397 7.46433 8.94683 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.037480 B = 0.009379 C = 0.008051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.882802 B = 2984.743473 C = 3476.864636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.213 3.787 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.058 0.942 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.544 5.544 13 C 0.073 3.927 14 C -0.090 4.090 15 H 0.066 0.934 16 C -0.138 4.138 17 C -0.100 4.100 18 C -0.087 4.087 19 H 0.068 0.932 20 C -0.137 4.137 21 C 0.059 3.941 22 H 0.061 0.939 23 H 0.026 0.974 24 H 0.024 0.976 25 H 0.261 0.739 26 H 0.011 0.989 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.019 0.981 37 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -6.261 12.095 13.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.785 3.215 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.193 1.193 12 N -0.267 5.267 13 C -0.055 4.055 14 C -0.109 4.109 15 H 0.084 0.916 16 C -0.195 4.195 17 C -0.137 4.137 18 C -0.105 4.105 19 H 0.086 0.914 20 C -0.195 4.195 21 C -0.069 4.069 22 H 0.080 0.920 23 H 0.045 0.955 24 H 0.043 0.957 25 H 0.070 0.930 26 H 0.029 0.971 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.074 0.926 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.037 0.963 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.337 -6.116 11.952 13.493 hybrid contribution -0.829 0.078 -1.326 1.566 sum 0.508 -6.039 10.626 12.233 Atomic orbital electron populations 1.22168 1.00550 0.98751 0.99889 1.19045 0.89878 0.92951 0.87518 0.97919 1.21413 1.30642 1.12410 0.90943 0.92400 1.25729 0.95423 0.95811 1.01928 1.70019 1.37921 1.24213 1.24000 0.85529 0.78840 0.78249 0.78871 1.20109 1.20862 1.19348 1.62138 1.59901 1.02605 1.02049 1.21969 0.96038 0.88877 0.98589 1.21211 1.00150 0.95223 0.94279 0.91562 1.21729 1.01275 0.94372 1.02157 1.21642 1.00674 0.94418 0.97008 1.21165 1.00244 0.95464 0.93667 0.91350 1.21733 1.01062 1.00381 0.96301 1.22125 0.96407 0.97658 0.90693 0.92036 0.95530 0.95705 0.92977 0.97093 0.92492 0.92908 0.93121 0.90656 0.89882 0.92608 0.90767 0.92683 0.92843 0.96283 0.92968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.84 8.28 71.98 0.60 -7.25 16 2 C 0.21 11.31 2.41 44.17 0.11 11.42 16 3 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 4 C -0.52 -29.14 7.86 25.60 0.20 -28.94 16 5 H 0.06 3.26 6.40 -2.91 -0.02 3.24 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.16 11.32 21.45 0.24 -53.92 16 8 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 N -0.54 -24.28 4.67 -875.50 -4.09 -28.38 16 13 C 0.07 2.96 4.03 86.33 0.35 3.31 16 14 C -0.09 -2.75 2.88 -10.74 -0.03 -2.78 16 15 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 16 C -0.14 -3.43 9.20 71.98 0.66 -2.77 16 17 C -0.10 -2.63 4.57 30.68 0.14 -2.49 16 18 C -0.09 -2.50 2.88 -10.74 -0.03 -2.53 16 19 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 20 C -0.14 -3.07 9.20 71.98 0.66 -2.41 16 21 C 0.06 2.23 4.17 86.32 0.36 2.59 16 22 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 23 H 0.03 1.30 6.63 -2.38 -0.02 1.29 16 24 H 0.02 1.13 6.54 -2.38 -0.02 1.11 16 25 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 26 H 0.01 0.46 6.71 -2.39 -0.02 0.44 16 27 H 0.06 2.56 6.02 -2.39 -0.01 2.55 16 28 H 0.05 1.28 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.02 0.73 6.63 -2.39 -0.02 0.72 16 37 H 0.05 2.02 8.12 -2.38 -0.02 2.01 16 Total: -1.00 -60.85 278.64 2.65 -58.20 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.01 Total: 8.45 kcal Atomic # 6 Polarization: -34.33 SS G_CDS: 3.46 Total: -30.87 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -3.85 Total: -82.29 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.85 2.65 -58.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224812053.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.524 kcal (2) G-P(sol) polarization free energy of solvation -60.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds