Wall clock time and date at job start Mon Mar 30 2020 02:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47454 * 2 1 4 4 C 1.50694 * 109.47175 * 239.99836 * 2 1 3 5 5 H 1.08006 * 120.00338 * 245.46632 * 4 2 1 6 6 C 1.37875 * 120.00038 * 65.46236 * 4 2 1 7 7 N 1.31516 * 120.00126 * 9.54646 * 6 4 2 8 8 Si 1.86799 * 120.00367 * 189.54667 * 6 4 2 9 9 H 1.48496 * 109.47474 * 84.99528 * 8 6 4 10 10 H 1.48501 * 109.47397 * 204.99742 * 8 6 4 11 11 H 1.48500 * 109.46968 * 324.99613 * 8 6 4 12 12 N 1.46901 * 109.46750 * 120.00026 * 2 1 3 13 13 C 1.46904 * 111.00303 * 274.99560 * 12 2 1 14 14 H 1.09003 * 110.42781 * 34.30395 * 13 12 2 15 15 C 1.54891 * 110.48756 * 271.76324 * 13 12 2 16 16 C 1.54890 * 102.74516 * 203.37649 * 15 13 12 17 17 C 1.54262 * 104.19616 * 37.94112 * 16 15 13 18 18 H 1.09004 * 110.03278 * 95.72212 * 17 16 15 19 19 C 1.53005 * 110.03323 * 217.10365 * 17 16 15 20 20 C 1.54085 * 106.62556 * 336.27715 * 17 16 15 21 21 H 1.08997 * 110.16469 * 240.88099 * 20 17 16 22 22 C 1.53001 * 110.00532 * 119.38147 * 20 17 16 23 23 H 1.09001 * 109.46786 * 63.73140 * 1 2 3 24 24 H 1.08994 * 109.47416 * 183.73644 * 1 2 3 25 25 H 1.09008 * 109.46939 * 303.73871 * 1 2 3 26 26 H 0.96994 * 120.00318 * 179.97438 * 7 6 4 27 27 H 1.00899 * 110.99819 * 151.04602 * 12 2 1 28 28 H 1.09004 * 110.75283 * 321.68963 * 15 13 12 29 29 H 1.08993 * 110.75594 * 84.87692 * 15 13 12 30 30 H 1.09000 * 110.48487 * 156.61898 * 16 15 13 31 31 H 1.09000 * 110.48523 * 279.12776 * 16 15 13 32 32 H 1.08995 * 109.47098 * 58.54587 * 19 17 16 33 33 H 1.08997 * 109.47149 * 178.55099 * 19 17 16 34 34 H 1.08998 * 109.46902 * 298.54748 * 19 17 16 35 35 H 1.08998 * 109.47072 * 302.97672 * 22 20 17 36 36 H 1.08992 * 109.47232 * 62.97941 * 22 20 17 37 37 H 1.09005 * 109.47203 * 182.98153 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5785 -1.6372 -1.1338 6 6 1.7946 -0.1774 -2.4795 7 7 1.2991 1.0355 -2.5935 8 14 2.1763 -1.1779 -4.0101 9 1 1.0245 -2.0610 -4.3243 10 1 2.4231 -0.2612 -5.1520 11 1 3.3849 -2.0070 -3.7709 12 7 2.0196 -0.6925 1.1995 13 6 2.0825 0.2225 2.3470 14 1 1.2707 0.9484 2.2997 15 6 3.4526 0.9436 2.3909 16 6 3.5813 1.3422 3.8821 17 6 2.9808 0.1447 4.6470 18 1 3.7739 -0.5352 4.9583 19 6 2.2053 0.6393 5.8697 20 6 2.0242 -0.5670 3.6710 21 1 1.0086 -0.5581 4.0667 22 6 2.4858 -2.0078 3.4428 23 1 -0.3633 0.4548 -0.9216 24 1 -0.3634 -1.0254 0.0670 25 1 -0.3633 0.5708 0.8547 26 1 1.1322 1.4106 -3.4723 27 1 2.9172 -1.1205 1.0288 28 1 4.2554 0.2653 2.1017 29 1 3.4453 1.8262 1.7515 30 1 4.6285 1.4803 4.1511 31 1 3.0134 2.2503 4.0846 32 1 1.4158 1.3188 5.5487 33 1 1.7637 -0.2115 6.3885 34 1 2.8839 1.1631 6.5429 35 1 3.5104 -2.0064 3.0711 36 1 2.4411 -2.5568 4.3832 37 1 1.8346 -2.4864 2.7113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225118566.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:41 Heat of formation + Delta-G solvation = -28.719355 kcal Electronic energy + Delta-G solvation = -14744.778371 eV Core-core repulsion = 12520.645992 eV Total energy + Delta-G solvation = -2224.132379 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.85928 -35.06597 -32.37664 -30.61749 -30.16211 -27.52722 -25.31881 -24.37771 -23.39630 -20.45477 -19.68608 -18.44948 -16.51474 -15.29239 -14.96865 -14.50780 -13.67834 -13.33590 -13.21659 -12.81318 -12.53434 -12.27326 -12.09827 -11.72065 -11.46839 -11.42767 -10.86389 -10.64965 -10.61038 -10.45682 -10.28668 -10.23034 -10.08951 -10.01571 -9.96667 -9.62682 -8.83015 -8.40344 -7.10969 -6.02963 -4.04619 3.32129 3.38263 3.40884 4.43299 4.87247 4.96623 5.04627 5.31134 5.49008 5.56455 5.68331 5.73291 5.81186 5.84927 5.98119 6.03833 6.10994 6.15685 6.25133 6.32399 6.39158 6.56591 6.61881 6.72465 6.81805 6.88461 6.93696 7.15581 7.24743 7.50690 7.82594 7.91450 8.22552 8.45660 8.76442 9.08084 9.60313 11.06313 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.051457 B = 0.007296 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.010936 B = 3836.583103 C = 3900.373239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.209 3.791 3 H 0.008 0.992 4 C -0.519 4.519 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.679 5.679 13 C 0.091 3.909 14 H 0.072 0.928 15 C -0.151 4.151 16 C -0.117 4.117 17 C -0.095 4.095 18 H 0.067 0.933 19 C -0.142 4.142 20 C -0.082 4.082 21 H 0.065 0.935 22 C -0.131 4.131 23 H 0.061 0.939 24 H 0.033 0.967 25 H 0.007 0.993 26 H 0.261 0.739 27 H 0.332 0.668 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.048 0.952 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.720 -0.821 12.255 12.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.101 3.899 3 H 0.026 0.974 4 C -0.558 4.558 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.309 5.309 13 C -0.021 4.021 14 H 0.090 0.910 15 C -0.190 4.190 16 C -0.155 4.155 17 C -0.114 4.114 18 H 0.086 0.914 19 C -0.199 4.199 20 C -0.101 4.101 21 H 0.083 0.917 22 C -0.189 4.189 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.150 0.850 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.024 -0.943 12.255 12.457 hybrid contribution 0.931 0.157 -1.160 1.496 sum 2.955 -0.785 11.095 11.509 Atomic orbital electron populations 1.21654 0.98533 0.98693 0.98795 1.19090 0.91894 0.93029 0.85847 0.97394 1.21234 1.35753 1.08082 0.90709 0.92306 1.24916 0.95301 0.94602 0.99006 1.69972 1.45091 1.13987 1.23730 0.86620 0.78720 0.80076 0.82607 1.20541 1.21438 1.20012 1.60761 1.32068 1.32338 1.05727 1.22360 0.95147 0.93072 0.91497 0.91015 1.23188 0.99346 1.00939 0.95549 1.22346 0.99792 0.97612 0.95743 1.21901 0.97601 0.96855 0.95031 0.91449 1.21869 0.99893 1.00704 0.97479 1.21828 0.98080 0.95520 0.94700 0.91682 1.21648 1.01327 0.95579 1.00304 0.92031 0.94788 0.97397 0.92974 0.84975 0.91797 0.91893 0.92568 0.91990 0.92732 0.93049 0.93329 0.93577 0.94604 0.90713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.93 9.26 37.16 0.34 -2.59 16 2 C 0.21 5.29 2.33 -68.87 -0.16 5.13 16 3 H 0.01 0.23 7.75 -51.93 -0.40 -0.17 16 4 C -0.52 -14.31 8.48 -34.44 -0.29 -14.60 16 5 H 0.06 1.60 7.69 -52.48 -0.40 1.20 16 6 C 0.06 1.78 5.17 -17.82 -0.09 1.69 16 7 N -0.89 -25.82 12.16 55.43 0.67 -25.14 16 8 Si 0.89 21.45 29.55 -169.99 -5.02 16.42 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.68 -14.32 4.62 -99.22 -0.46 -14.78 16 13 C 0.09 1.64 2.79 -66.05 -0.18 1.45 16 14 H 0.07 1.41 7.23 -51.93 -0.38 1.03 16 15 C -0.15 -2.51 6.39 -24.74 -0.16 -2.67 16 16 C -0.12 -1.59 6.36 -25.07 -0.16 -1.75 16 17 C -0.10 -1.24 3.16 -89.39 -0.28 -1.52 16 18 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 19 C -0.14 -1.60 8.84 37.16 0.33 -1.27 16 20 C -0.08 -1.24 3.14 -89.39 -0.28 -1.52 16 21 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 22 C -0.13 -1.94 8.01 37.16 0.30 -1.65 16 23 H 0.06 1.65 6.83 -51.93 -0.35 1.30 16 24 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.01 0.16 7.52 -51.92 -0.39 -0.23 16 26 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 27 H 0.33 6.97 7.23 -39.29 -0.28 6.69 16 28 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 29 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.82 7.86 -51.93 -0.41 0.41 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 0.68 7.99 -51.93 -0.42 0.26 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 1.24 7.38 -51.93 -0.38 0.86 16 LS Contribution 287.52 15.07 4.33 4.33 Total: -1.00 -27.79 287.52 -7.83 -35.62 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.71 Total: 2.84 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -0.64 Total: -19.30 kcal Atomic # 7 Polarization: -40.14 SS G_CDS: 0.22 Total: -39.92 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -27.79 -7.83 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225118566.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.902 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds