Wall clock time and date at job start Mon Mar 30 2020 02:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47941 * 2 1 4 4 C 1.50707 * 109.46973 * 239.99585 * 2 1 3 5 5 H 1.07998 * 120.00219 * 240.00521 * 4 2 1 6 6 C 1.37881 * 119.99818 * 60.00481 * 4 2 1 7 7 N 1.31514 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99866 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47446 * 59.99778 * 8 6 4 10 10 H 1.48495 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47047 * 299.99795 * 8 6 4 12 12 N 1.46908 * 109.47108 * 120.00095 * 2 1 3 13 13 C 1.46898 * 110.99621 * 274.16397 * 12 2 1 14 14 H 1.08996 * 109.47457 * 11.23272 * 13 12 2 15 15 C 1.53006 * 109.46756 * 131.23336 * 13 12 2 16 16 C 1.52996 * 109.46971 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47078 * 299.99954 * 16 15 13 18 18 C 1.52993 * 109.47338 * 60.00031 * 17 16 15 19 19 C 1.52995 * 109.47396 * 251.23014 * 13 12 2 20 20 H 1.09004 * 109.47211 * 300.00348 * 19 13 12 21 21 C 1.53003 * 109.47027 * 59.99879 * 19 13 12 22 22 H 1.09005 * 109.47127 * 53.82671 * 1 2 3 23 23 H 1.09000 * 109.47557 * 173.83125 * 1 2 3 24 24 H 1.09003 * 109.46884 * 293.83172 * 1 2 3 25 25 H 0.96994 * 119.99885 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99606 * 150.21247 * 12 2 1 27 27 H 1.09007 * 109.46950 * 299.99581 * 15 13 12 28 28 H 1.08996 * 109.47190 * 59.99772 * 15 13 12 29 29 H 1.09004 * 109.47155 * 59.99929 * 16 15 13 30 30 H 1.09002 * 109.46866 * 179.97438 * 16 15 13 31 31 H 1.08997 * 109.47023 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47107 * 300.00004 * 17 16 15 33 33 H 1.09004 * 109.47044 * 59.99934 * 18 17 16 34 34 H 1.09001 * 109.47435 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.46412 * 57.85102 * 21 19 13 36 36 H 1.08999 * 109.47411 * 177.84331 * 21 19 13 37 37 H 1.08998 * 109.47471 * 297.85285 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6035 8 14 2.3212 -1.1205 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 7 2.0196 -0.6926 1.1995 13 6 2.1012 0.2273 2.3419 14 1 1.5948 1.1601 2.0942 15 6 1.4286 -0.4106 3.5592 16 6 1.5130 0.5476 4.7489 17 6 2.9812 0.8346 5.0695 18 6 3.6538 1.4724 3.8523 19 6 3.5696 0.5137 2.6624 20 1 4.0761 -0.4192 2.9101 21 6 4.2422 1.1514 1.4451 22 1 -0.3634 0.6066 -0.8296 23 1 -0.3634 -1.0217 -0.1104 24 1 -0.3633 0.4152 0.9401 25 1 0.7082 1.1607 -3.4844 26 1 2.9109 -1.1320 1.0247 27 1 0.3824 -0.6146 3.3309 28 1 1.9351 -1.3434 3.8069 29 1 1.0062 1.4803 4.5009 30 1 1.0334 0.0934 5.6160 31 1 3.0413 1.5169 5.9174 32 1 3.4880 -0.0980 5.3175 33 1 3.1470 2.4051 3.6043 34 1 4.6999 1.6765 4.0806 35 1 3.7121 2.0646 1.1740 36 1 5.2780 1.3905 1.6859 37 1 4.2155 0.4537 0.6080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000225155900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:26 Heat of formation + Delta-G solvation = -33.593148 kcal Electronic energy + Delta-G solvation = -14909.448451 eV Core-core repulsion = 12685.104729 eV Total energy + Delta-G solvation = -2224.343723 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.81597 -35.07242 -32.56986 -31.81654 -29.65522 -27.09739 -25.70110 -24.87038 -21.62282 -20.86707 -19.73148 -19.38143 -16.39564 -14.93417 -14.88616 -14.21014 -14.12720 -13.77326 -13.40251 -12.97608 -12.51188 -12.05384 -11.93606 -11.57631 -11.31320 -11.18213 -10.90764 -10.87799 -10.65760 -10.53641 -10.41732 -10.22628 -10.10330 -10.00419 -9.71211 -9.49940 -8.73262 -8.43582 -7.12621 -5.99149 -4.04694 3.32458 3.36998 3.39823 4.42771 4.93615 5.02229 5.11232 5.32609 5.42858 5.45632 5.64462 5.77112 5.82894 5.89314 5.94541 6.10759 6.12729 6.22745 6.36127 6.39775 6.43896 6.53715 6.60838 6.75445 6.80834 6.91013 6.96831 7.21793 7.32094 7.61172 7.83450 7.96806 8.31002 8.50114 8.76832 9.08037 9.61049 11.07512 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.008060 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.727862 B = 3473.284555 C = 3733.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.213 3.787 3 H 0.004 0.996 4 C -0.518 4.518 5 H 0.057 0.943 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.686 5.686 13 C 0.094 3.906 14 H 0.060 0.940 15 C -0.104 4.104 16 C -0.120 4.120 17 C -0.117 4.117 18 C -0.111 4.111 19 C -0.109 4.109 20 H 0.066 0.934 21 C -0.149 4.149 22 H 0.074 0.926 23 H 0.030 0.970 24 H 0.004 0.996 25 H 0.260 0.740 26 H 0.330 0.670 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.764 0.908 11.365 12.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.106 3.894 3 H 0.021 0.979 4 C -0.557 4.557 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.316 5.316 13 C -0.017 4.017 14 H 0.078 0.922 15 C -0.142 4.142 16 C -0.158 4.158 17 C -0.154 4.154 18 C -0.149 4.149 19 C -0.129 4.129 20 H 0.084 0.916 21 C -0.207 4.207 22 H 0.093 0.907 23 H 0.049 0.951 24 H 0.023 0.977 25 H 0.070 0.930 26 H 0.148 0.852 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.043 0.785 11.360 11.787 hybrid contribution 1.053 0.109 -1.162 1.572 sum 4.096 0.894 10.199 11.027 Atomic orbital electron populations 1.21707 0.98192 0.99915 0.98202 1.19151 0.92303 0.92371 0.85585 0.97863 1.21256 1.31429 1.12397 0.90622 0.92448 1.24905 0.95078 0.94979 0.98942 1.69902 1.36649 1.22913 1.23444 0.86630 0.79044 0.79834 0.82286 1.20249 1.21354 1.20395 1.60742 1.32538 1.32068 1.06259 1.21568 0.92748 0.95349 0.92053 0.92168 1.21544 1.01074 0.97847 0.93737 1.21559 0.96040 0.99925 0.98249 1.21517 0.96293 1.00299 0.97324 1.21569 0.99740 0.98703 0.94858 1.21730 0.97796 0.98447 0.94927 0.91601 1.21868 0.98985 1.01587 0.98214 0.90713 0.95056 0.97707 0.92969 0.85170 0.91949 0.92494 0.92384 0.92637 0.92767 0.92328 0.92246 0.92691 0.92893 0.93722 0.91302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.13 37.16 0.34 -2.75 16 2 C 0.21 5.40 1.83 -68.86 -0.13 5.27 16 3 H 0.00 0.10 7.09 -51.93 -0.37 -0.27 16 4 C -0.52 -14.24 8.59 -34.44 -0.30 -14.53 16 5 H 0.06 1.56 7.61 -52.49 -0.40 1.16 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.62 11.39 55.43 0.63 -24.99 16 8 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.69 -14.68 5.87 -100.95 -0.59 -15.27 16 13 C 0.09 1.70 1.84 -67.71 -0.12 1.57 16 14 H 0.06 1.21 7.34 -51.93 -0.38 0.83 16 15 C -0.10 -1.64 5.53 -26.73 -0.15 -1.79 16 16 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 17 C -0.12 -1.42 5.92 -26.73 -0.16 -1.57 16 18 C -0.11 -1.48 5.21 -26.71 -0.14 -1.62 16 19 C -0.11 -1.72 2.05 -90.60 -0.19 -1.90 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 21 C -0.15 -2.52 8.27 37.16 0.31 -2.21 16 22 H 0.07 2.05 6.26 -51.93 -0.33 1.72 16 23 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.09 7.97 -51.93 -0.41 -0.32 16 25 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.33 6.98 6.81 -39.29 -0.27 6.71 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 1.32 6.80 -51.93 -0.35 0.97 16 LS Contribution 283.61 15.07 4.27 4.27 Total: -1.00 -27.73 283.61 -8.21 -35.94 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -6.72 Total: 3.26 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: -0.78 Total: -19.62 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.04 Total: -40.26 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -27.73 -8.21 -35.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225155900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.345 kcal (2) G-P(sol) polarization free energy of solvation -27.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds