Wall clock time and date at job start Mon Mar 30 2020 02:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08995 * 109.47941 * 2 1 4 4 C 1.50707 * 109.46973 * 239.99585 * 2 1 3 5 5 H 1.07998 * 120.00219 * 240.00521 * 4 2 1 6 6 C 1.37881 * 119.99818 * 60.00481 * 4 2 1 7 7 N 1.31514 * 119.99931 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99866 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47446 * 59.99778 * 8 6 4 10 10 H 1.48495 * 109.47049 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47047 * 299.99795 * 8 6 4 12 12 N 1.46908 * 109.47108 * 120.00095 * 2 1 3 13 13 C 1.46898 * 110.99621 * 274.16397 * 12 2 1 14 14 H 1.08996 * 109.47457 * 11.23272 * 13 12 2 15 15 C 1.53006 * 109.46756 * 131.23336 * 13 12 2 16 16 C 1.52996 * 109.46971 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47078 * 299.99954 * 16 15 13 18 18 C 1.52993 * 109.47338 * 60.00031 * 17 16 15 19 19 C 1.52995 * 109.47396 * 251.23014 * 13 12 2 20 20 H 1.09004 * 109.47211 * 300.00348 * 19 13 12 21 21 C 1.53003 * 109.47027 * 59.99879 * 19 13 12 22 22 H 1.09005 * 109.47127 * 53.82671 * 1 2 3 23 23 H 1.09000 * 109.47557 * 173.83125 * 1 2 3 24 24 H 1.09003 * 109.46884 * 293.83172 * 1 2 3 25 25 H 0.96994 * 119.99885 * 180.02562 * 7 6 4 26 26 H 1.00897 * 110.99606 * 150.21247 * 12 2 1 27 27 H 1.09007 * 109.46950 * 299.99581 * 15 13 12 28 28 H 1.08996 * 109.47190 * 59.99772 * 15 13 12 29 29 H 1.09004 * 109.47155 * 59.99929 * 16 15 13 30 30 H 1.09002 * 109.46866 * 179.97438 * 16 15 13 31 31 H 1.08997 * 109.47023 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47107 * 300.00004 * 17 16 15 33 33 H 1.09004 * 109.47044 * 59.99934 * 18 17 16 34 34 H 1.09001 * 109.47435 * 180.02562 * 18 17 16 35 35 H 1.09006 * 109.46412 * 57.85102 * 21 19 13 36 36 H 1.08999 * 109.47411 * 177.84331 * 21 19 13 37 37 H 1.08998 * 109.47471 * 297.85285 * 21 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5887 -1.1314 6 6 1.6992 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6035 8 14 2.3212 -1.1205 -4.0079 9 1 1.8256 -2.5204 -4.0077 10 1 1.8269 -0.4201 -5.2204 11 1 3.8062 -1.1212 -4.0081 12 7 2.0196 -0.6926 1.1995 13 6 2.1012 0.2273 2.3419 14 1 1.5948 1.1601 2.0942 15 6 1.4286 -0.4106 3.5592 16 6 1.5130 0.5476 4.7489 17 6 2.9812 0.8346 5.0695 18 6 3.6538 1.4724 3.8523 19 6 3.5696 0.5137 2.6624 20 1 4.0761 -0.4192 2.9101 21 6 4.2422 1.1514 1.4451 22 1 -0.3634 0.6066 -0.8296 23 1 -0.3634 -1.0217 -0.1104 24 1 -0.3633 0.4152 0.9401 25 1 0.7082 1.1607 -3.4844 26 1 2.9109 -1.1320 1.0247 27 1 0.3824 -0.6146 3.3309 28 1 1.9351 -1.3434 3.8069 29 1 1.0062 1.4803 4.5009 30 1 1.0334 0.0934 5.6160 31 1 3.0413 1.5169 5.9174 32 1 3.4880 -0.0980 5.3175 33 1 3.1470 2.4051 3.6043 34 1 4.6999 1.6765 4.0806 35 1 3.7121 2.0646 1.1740 36 1 5.2780 1.3905 1.6859 37 1 4.2155 0.4537 0.6080 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225155900.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:25 Heat of formation + Delta-G solvation = -49.597697 kcal Electronic energy + Delta-G solvation = -14910.142461 eV Core-core repulsion = 12685.104729 eV Total energy + Delta-G solvation = -2225.037732 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.17338 -36.82393 -34.33639 -33.22304 -31.30436 -28.71109 -27.42659 -26.65454 -22.97748 -22.14808 -21.56426 -20.72279 -18.40309 -16.85620 -16.33443 -15.77129 -15.43604 -15.11272 -14.80669 -14.63827 -14.13404 -13.57324 -13.48806 -13.19724 -12.81531 -12.74841 -12.66411 -12.53329 -12.32908 -12.21312 -12.03023 -11.85695 -11.69283 -11.31520 -11.10741 -10.98592 -10.69378 -10.54374 -8.90095 -8.12295 -6.25490 1.41087 1.42989 1.50480 2.41482 3.16423 3.60126 3.79292 3.95578 4.09693 4.28151 4.43530 4.54817 4.61016 4.67787 4.74594 4.79362 4.85796 4.92948 5.00262 5.09818 5.16821 5.20521 5.24248 5.28229 5.33578 5.37997 5.44551 5.51682 5.55143 5.62380 5.75547 5.89513 6.22531 6.55504 6.85332 7.08027 7.44897 8.93628 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.048370 B = 0.008060 C = 0.007497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.727862 B = 3473.284555 C = 3733.779868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.223 3.777 3 H -0.027 1.027 4 C -0.536 4.536 5 H 0.057 0.943 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.959 3.041 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.270 1.270 12 N -0.685 5.685 13 C 0.092 3.908 14 H 0.033 0.967 15 C -0.098 4.098 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.103 4.103 20 H 0.076 0.924 21 C -0.144 4.144 22 H 0.051 0.949 23 H 0.023 0.977 24 H 0.018 0.982 25 H 0.261 0.739 26 H 0.331 0.669 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.032 0.968 36 H 0.070 0.930 37 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.863 0.341 12.771 13.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.114 3.886 3 H -0.009 1.009 4 C -0.575 4.575 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.315 5.315 13 C -0.019 4.019 14 H 0.052 0.948 15 C -0.137 4.137 16 C -0.154 4.154 17 C -0.150 4.150 18 C -0.145 4.145 19 C -0.123 4.123 20 H 0.094 0.906 21 C -0.201 4.201 22 H 0.070 0.930 23 H 0.042 0.958 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.149 0.851 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.089 0.911 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 4.147 0.214 12.789 13.446 hybrid contribution 0.702 0.308 -1.574 1.751 sum 4.848 0.522 11.215 12.230 Atomic orbital electron populations 1.21538 0.98419 0.98915 0.97974 1.18885 0.92032 0.90847 0.86824 1.00934 1.21581 1.31570 1.12534 0.91768 0.92497 1.25713 0.95211 0.95656 1.01963 1.70035 1.37560 1.24138 1.24099 0.85597 0.78756 0.78682 0.78503 1.19724 1.20967 1.19560 1.60705 1.32647 1.32506 1.05659 1.21650 0.94799 0.93757 0.91655 0.94821 1.21481 0.99695 0.98754 0.93748 1.21542 0.97367 0.98966 0.97512 1.21508 0.95007 1.01208 0.97237 1.21551 1.01183 0.97626 0.94179 1.21661 0.95572 0.99548 0.95477 0.90598 1.21808 1.00540 0.99927 0.97868 0.93000 0.95752 0.96260 0.92945 0.85094 0.93622 0.91836 0.92941 0.90530 0.90453 0.91365 0.93029 0.90702 0.94854 0.91104 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.13 71.98 0.66 -5.08 16 2 C 0.22 11.60 1.83 44.17 0.08 11.68 16 3 H -0.03 -1.54 7.09 -2.39 -0.02 -1.56 16 4 C -0.54 -29.96 8.59 25.60 0.22 -29.74 16 5 H 0.06 3.11 7.61 -2.91 -0.02 3.09 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -54.00 11.39 21.45 0.24 -53.75 16 8 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 9 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 12 N -0.69 -29.72 5.87 -473.30 -2.78 -32.50 16 13 C 0.09 3.31 1.84 44.92 0.08 3.40 16 14 H 0.03 1.39 7.34 -2.39 -0.02 1.37 16 15 C -0.10 -3.00 5.53 30.59 0.17 -2.83 16 16 C -0.12 -2.75 5.92 30.59 0.18 -2.57 16 17 C -0.11 -2.31 5.92 30.59 0.18 -2.13 16 18 C -0.11 -2.59 5.21 30.61 0.16 -2.43 16 19 C -0.10 -3.11 2.05 -10.78 -0.02 -3.13 16 20 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 21 C -0.14 -4.86 8.27 71.98 0.60 -4.26 16 22 H 0.05 2.93 6.26 -2.38 -0.01 2.91 16 23 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.02 0.89 7.97 -2.39 -0.02 0.87 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.33 14.12 6.81 -89.70 -0.61 13.51 16 27 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 30 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.04 1.53 6.80 -2.39 -0.02 1.51 16 Total: -1.00 -59.94 283.61 2.64 -57.29 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.40 Total: 18.68 kcal Atomic # 6 Polarization: -38.63 SS G_CDS: 2.75 Total: -35.88 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -2.53 Total: -86.26 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -59.94 2.64 -57.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225155900.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.695 kcal (2) G-P(sol) polarization free energy of solvation -59.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds