Wall clock time and date at job start Mon Mar 30 2020 03:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47134 * 2 1 4 4 C 1.50699 * 109.47639 * 239.99862 * 2 1 3 5 5 H 1.08000 * 120.00109 * 245.34327 * 4 2 1 6 6 C 1.37879 * 119.99609 * 65.61597 * 4 2 1 7 7 N 1.31516 * 120.00311 * 359.72280 * 6 4 2 8 8 Si 1.86800 * 119.99793 * 179.72949 * 6 4 2 9 9 H 1.48504 * 109.47246 * 89.99705 * 8 6 4 10 10 H 1.48499 * 109.46924 * 209.99528 * 8 6 4 11 11 H 1.48498 * 109.47201 * 329.99560 * 8 6 4 12 12 N 1.46907 * 109.47045 * 119.99630 * 2 1 3 13 13 C 1.46842 * 110.99931 * 297.58848 * 12 2 1 14 14 C 1.53046 * 109.52020 * 174.15934 * 13 12 2 15 15 C 1.53115 * 109.27520 * 59.18272 * 14 13 12 16 16 H 1.08996 * 109.52766 * 62.31350 * 15 14 13 17 17 C 1.53007 * 109.52300 * 182.44050 * 15 14 13 18 18 C 1.53123 * 109.16311 * 302.34060 * 15 14 13 19 19 C 1.46845 * 110.99750 * 173.38000 * 12 2 1 20 20 H 1.09009 * 109.46403 * 305.85258 * 19 12 2 21 21 C 1.52995 * 109.46571 * 65.82647 * 19 12 2 22 22 H 1.08997 * 109.47084 * 60.00158 * 1 2 3 23 23 H 1.09008 * 109.46535 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47300 * 299.99795 * 1 2 3 25 25 H 0.96996 * 120.00202 * 180.02562 * 7 6 4 26 26 H 1.09002 * 109.46702 * 294.17590 * 13 12 2 27 27 H 1.08993 * 109.46448 * 54.15772 * 13 12 2 28 28 H 1.09001 * 109.50069 * 179.12169 * 14 13 12 29 29 H 1.08995 * 109.50016 * 299.19819 * 14 13 12 30 30 H 1.09000 * 109.47119 * 59.99701 * 17 15 14 31 31 H 1.08998 * 109.47313 * 179.97438 * 17 15 14 32 32 H 1.08999 * 109.46629 * 299.99959 * 17 15 14 33 33 H 1.09001 * 109.50473 * 177.59547 * 18 15 14 34 34 H 1.08999 * 109.50633 * 297.68307 * 18 15 14 35 35 H 1.08992 * 109.47417 * 62.93001 * 21 19 12 36 36 H 1.09000 * 109.47413 * 182.94018 * 21 19 12 37 37 H 1.09004 * 109.46761 * 302.93306 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2304 5 1 2.5804 -1.6361 -1.1336 6 6 1.7975 -0.1757 -2.4794 7 7 1.1302 0.9515 -2.5973 8 14 2.4269 -1.0523 -4.0041 9 1 1.3946 -2.0029 -4.4901 10 1 2.7186 -0.0540 -5.0640 11 1 3.6676 -1.7969 -3.6704 12 7 2.0197 -0.6925 1.1995 13 6 1.5965 0.0060 2.4199 14 6 1.9975 -0.8178 3.6458 15 6 3.5161 -1.0141 3.6482 16 1 4.0086 -0.0448 3.7261 17 6 3.9168 -1.8883 4.8382 18 6 3.9363 -1.6998 2.3452 19 6 3.4790 -0.8504 1.1571 20 1 3.7641 -1.3431 0.2274 21 6 4.1431 0.5260 1.2289 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0278 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 0.9646 1.3275 -3.4759 26 1 2.0784 0.9826 2.4652 27 1 0.5143 0.1353 2.4077 28 1 1.6972 -0.2917 4.5519 29 1 1.5045 -1.7892 3.6086 30 1 3.4257 -2.8581 4.7583 31 1 4.9978 -2.0278 4.8389 32 1 3.6123 -1.4021 5.7650 33 1 5.0211 -1.8038 2.3220 34 1 3.4748 -2.6856 2.2874 35 1 3.9001 0.9975 2.1810 36 1 5.2240 0.4128 1.1448 37 1 3.7784 1.1484 0.4117 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000225722399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:52 Heat of formation + Delta-G solvation = -30.580263 kcal Electronic energy + Delta-G solvation = -15202.997732 eV Core-core repulsion = 12978.784658 eV Total energy + Delta-G solvation = -2224.213074 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.58903 -36.52596 -34.28441 -32.91124 -31.11819 -28.14483 -27.53544 -27.23556 -23.72301 -22.81805 -21.49097 -19.41657 -18.12005 -17.31309 -16.23509 -15.78453 -15.64918 -14.99375 -14.72501 -14.48388 -14.02412 -13.73961 -13.30680 -13.21273 -12.84704 -12.79783 -12.74096 -12.50447 -12.37734 -12.13274 -12.07841 -11.86371 -11.82740 -11.29419 -11.13092 -10.72531 -10.67775 -10.43979 -8.75525 -8.11200 -6.20550 1.40711 1.41471 1.51426 2.42519 3.19248 3.42112 3.97677 3.99050 4.05966 4.38362 4.48313 4.63278 4.64823 4.72643 4.73222 4.80766 4.89958 4.96171 4.97661 5.04965 5.12324 5.13346 5.20480 5.25704 5.31195 5.40894 5.42446 5.53480 5.59391 5.68120 5.79010 5.85338 6.27210 6.51183 6.87956 6.98180 7.48501 8.96615 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044109 B = 0.009374 C = 0.008492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.644548 B = 2986.220280 C = 3296.456613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.216 3.784 3 H -0.030 1.030 4 C -0.512 4.512 5 H 0.057 0.943 6 C 0.010 3.990 7 N -0.924 5.924 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.268 1.268 12 N -0.534 5.534 13 C 0.045 3.955 14 C -0.100 4.100 15 C -0.092 4.092 16 H 0.066 0.934 17 C -0.137 4.137 18 C -0.098 4.098 19 C 0.083 3.917 20 H 0.062 0.938 21 C -0.169 4.169 22 H 0.047 0.953 23 H 0.032 0.968 24 H 0.030 0.970 25 H 0.260 0.740 26 H 0.017 0.983 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -3.502 11.814 13.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.109 3.891 3 H -0.013 1.013 4 C -0.550 4.550 5 H 0.075 0.925 6 C -0.188 4.188 7 N -0.564 5.564 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.192 1.192 12 N -0.258 5.258 13 C -0.083 4.083 14 C -0.138 4.138 15 C -0.110 4.110 16 H 0.084 0.916 17 C -0.194 4.194 18 C -0.135 4.135 19 C -0.026 4.026 20 H 0.080 0.920 21 C -0.228 4.228 22 H 0.066 0.934 23 H 0.051 0.949 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.629 -3.853 11.689 13.149 hybrid contribution 0.322 0.818 -1.394 1.648 sum 4.951 -3.035 10.295 11.820 Atomic orbital electron populations 1.21624 0.97940 0.99016 0.99019 1.18990 0.91976 0.90728 0.87358 1.01261 1.21397 1.34533 1.07858 0.91218 0.92532 1.25697 0.95638 0.95654 1.01831 1.70054 1.41824 1.20404 1.24093 0.85600 0.78872 0.78251 0.79199 1.20204 1.21072 1.19248 1.62170 1.11032 1.50668 1.01974 1.22162 0.99695 0.95219 0.91195 1.21588 0.96021 1.00147 0.96037 1.21195 0.95523 0.99333 0.94970 0.91552 1.21749 1.01431 0.99384 0.96857 1.21625 1.00276 0.98412 0.93235 1.21571 0.87302 0.94950 0.98735 0.91960 1.22298 1.00900 0.99041 1.00563 0.93365 0.94904 0.95107 0.93093 0.96441 0.91974 0.90347 0.91894 0.92742 0.92090 0.91826 0.90856 0.92217 0.92028 0.91648 0.95608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.87 71.98 0.64 -5.29 16 2 C 0.22 11.24 1.52 44.17 0.07 11.31 16 3 H -0.03 -1.75 6.73 -2.39 -0.02 -1.77 16 4 C -0.51 -28.60 7.65 25.60 0.20 -28.40 16 5 H 0.06 3.16 6.45 -2.91 -0.02 3.14 16 6 C 0.01 0.57 5.33 84.65 0.45 1.02 16 7 N -0.92 -54.49 11.73 21.45 0.25 -54.23 16 8 Si 0.95 44.50 29.54 68.60 2.03 46.52 16 9 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 N -0.53 -23.14 4.46 -850.37 -3.80 -26.94 16 13 C 0.05 1.66 4.96 86.33 0.43 2.09 16 14 C -0.10 -2.82 5.38 30.65 0.16 -2.66 16 15 C -0.09 -2.37 2.48 -10.71 -0.03 -2.39 16 16 H 0.07 1.72 6.50 -2.39 -0.02 1.71 16 17 C -0.14 -2.71 9.20 71.98 0.66 -2.04 16 18 C -0.10 -2.95 4.90 30.65 0.15 -2.80 16 19 C 0.08 3.27 2.64 44.94 0.12 3.39 16 20 H 0.06 2.80 5.98 -2.38 -0.01 2.79 16 21 C -0.17 -6.35 8.23 71.98 0.59 -5.76 16 22 H 0.05 2.65 6.52 -2.39 -0.02 2.64 16 23 H 0.03 1.61 8.14 -2.38 -0.02 1.59 16 24 H 0.03 1.36 6.33 -2.39 -0.02 1.35 16 25 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 26 H 0.02 0.66 6.26 -2.39 -0.01 0.64 16 27 H 0.06 2.31 6.08 -2.39 -0.01 2.30 16 28 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 2.10 4.81 -2.39 -0.01 2.09 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.02 1.14 6.56 -2.38 -0.02 1.13 16 Total: -1.00 -60.66 272.03 2.95 -57.71 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: 1.02 Total: 8.48 kcal Atomic # 6 Polarization: -34.98 SS G_CDS: 3.44 Total: -31.54 kcal Atomic # 7 Polarization: -77.63 SS G_CDS: -3.55 Total: -81.17 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Total: -60.66 2.95 -57.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000225722399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.129 kcal (2) G-P(sol) polarization free energy of solvation -60.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds