Wall clock time and date at job start Mon Mar 30 2020 02:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 5 5 C 1.52996 * 109.46975 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47343 * 300.00008 * 5 4 2 7 7 H 1.09000 * 109.47312 * 299.99943 * 6 5 4 8 8 N 1.46906 * 109.46858 * 179.97438 * 6 5 4 9 9 C 1.46899 * 110.99973 * 85.00695 * 8 6 5 10 10 C 1.50697 * 109.47170 * 179.97438 * 9 8 6 11 11 H 1.07993 * 119.99900 * 359.97438 * 10 9 8 12 12 C 1.37881 * 119.99878 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99635 * 179.97438 * 12 10 9 14 14 Si 1.86794 * 119.99967 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47515 * 90.00030 * 14 12 10 16 16 H 1.48507 * 109.47095 * 209.99780 * 14 12 10 17 17 H 1.48497 * 109.47500 * 329.99810 * 14 12 10 18 18 C 1.52997 * 109.47092 * 60.00063 * 6 5 4 19 19 H 1.09000 * 109.47140 * 59.99774 * 18 6 5 20 20 C 1.52993 * 109.47347 * 179.97438 * 18 6 5 21 21 C 1.52999 * 109.46623 * 239.99904 * 2 1 3 22 22 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47375 * 300.00034 * 4 2 1 26 26 H 1.09000 * 109.47140 * 60.00051 * 4 2 1 27 27 H 1.09004 * 109.47368 * 60.00217 * 5 4 2 28 28 H 1.09004 * 109.47108 * 180.02562 * 5 4 2 29 29 H 1.00893 * 111.00415 * 321.04479 * 8 6 5 30 30 H 1.09005 * 109.46908 * 299.99670 * 9 8 6 31 31 H 1.08995 * 109.47707 * 59.99127 * 9 8 6 32 32 H 0.97004 * 119.99451 * 180.02562 * 13 12 10 33 33 H 1.09004 * 109.46672 * 60.00415 * 20 18 6 34 34 H 1.08996 * 109.47340 * 179.97438 * 20 18 6 35 35 H 1.08992 * 109.47718 * 300.00082 * 20 18 6 36 36 H 1.09000 * 109.47486 * 299.99829 * 21 2 1 37 37 H 1.09001 * 109.47362 * 60.00551 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2488 6 6 4.0795 -1.4434 -0.0004 7 1 3.7159 -2.4709 -0.0002 8 7 5.5486 -1.4433 -0.0010 9 6 6.0754 -2.5665 0.7856 10 6 7.5818 -2.5339 0.7615 11 1 8.0964 -1.7568 0.2160 12 6 8.3031 -3.4962 1.4359 13 7 9.6178 -3.4680 1.4143 14 14 7.4130 -4.8400 2.3799 15 1 7.1756 -6.0003 1.4841 16 1 8.2439 -5.2676 3.5341 17 1 6.1119 -4.3204 2.8723 18 6 3.5695 -0.7221 -1.2496 19 1 3.9332 0.3054 -1.2498 20 6 4.0795 -1.4433 -2.4988 21 6 2.0399 -0.7213 -1.2493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6767 -0.2074 2.1392 26 1 1.6767 -1.7489 1.2492 27 1 3.9338 0.3058 1.2486 28 1 3.9334 -1.2360 2.1386 29 1 5.9103 -0.5641 0.3369 30 1 5.7263 -2.4845 1.8150 31 1 5.7257 -3.5058 0.3573 32 1 10.1252 -4.1453 1.8885 33 1 3.7161 -2.4710 -2.4988 34 1 3.7158 -0.9297 -3.3888 35 1 5.1694 -1.4433 -2.4990 36 1 1.6766 -1.7490 -1.2493 37 1 1.6767 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226180040.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:48 Heat of formation + Delta-G solvation = -54.682051 kcal Electronic energy + Delta-G solvation = -14567.395590 eV Core-core repulsion = 12342.137384 eV Total energy + Delta-G solvation = -2225.258206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.28699 -36.60716 -34.69083 -33.58239 -31.87536 -28.99161 -27.36343 -25.73108 -23.46601 -22.62003 -21.22804 -20.73986 -18.94004 -16.83133 -16.20522 -15.84888 -15.48592 -15.30747 -14.86758 -14.68692 -14.49611 -13.77410 -13.66295 -13.22141 -13.09358 -12.94363 -12.68949 -12.59156 -12.47546 -12.04066 -11.92455 -11.84974 -11.59294 -11.45411 -11.31953 -11.05572 -10.84680 -10.80805 -8.99914 -8.31701 -6.35535 1.32314 1.33441 1.44635 2.31918 3.02374 3.47950 3.75029 3.84285 4.04940 4.20265 4.27363 4.49675 4.53185 4.60181 4.60817 4.76861 4.82259 4.87860 4.89881 5.01386 5.04276 5.09576 5.14341 5.20023 5.21214 5.29320 5.36903 5.45404 5.50940 5.54558 5.62825 5.68291 6.00483 6.58754 6.67937 6.79681 7.29632 8.85200 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.044291 B = 0.007343 C = 0.006780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.029185 B = 3812.044279 C = 4128.635087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.090 4.090 3 H 0.069 0.931 4 C -0.104 4.104 5 C -0.146 4.146 6 C 0.089 3.911 7 H 0.056 0.944 8 N -0.680 5.680 9 C 0.179 3.821 10 C -0.526 4.526 11 H 0.037 0.963 12 C 0.009 3.991 13 N -0.947 5.947 14 Si 0.949 3.051 15 H -0.266 1.266 16 H -0.279 1.279 17 H -0.253 1.253 18 C -0.072 4.072 19 H 0.064 0.936 20 C -0.134 4.134 21 C -0.102 4.102 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.041 0.959 29 H 0.334 0.666 30 H -0.016 1.016 31 H 0.017 0.983 32 H 0.268 0.732 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.742 5.598 -2.315 20.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 H 0.088 0.912 4 C -0.143 4.143 5 C -0.185 4.185 6 C -0.021 4.021 7 H 0.075 0.925 8 N -0.309 5.309 9 C 0.050 3.950 10 C -0.565 4.565 11 H 0.056 0.944 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.772 3.228 15 H -0.191 1.191 16 H -0.204 1.204 17 H -0.177 1.177 18 C -0.092 4.092 19 H 0.083 0.917 20 C -0.191 4.191 21 C -0.140 4.140 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.073 0.927 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.151 0.849 30 H 0.002 0.998 31 H 0.035 0.965 32 H 0.076 0.924 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -19.525 5.163 -2.864 20.398 hybrid contribution 0.417 -0.430 1.394 1.517 sum -19.108 4.732 -1.471 19.740 Atomic orbital electron populations 1.21787 0.94003 1.01976 1.02171 1.21130 0.96234 0.99346 0.94120 0.91217 1.21514 0.93443 1.00801 0.98505 1.22233 0.97672 1.00633 0.97966 1.21707 0.87171 0.98591 0.94673 0.92525 1.60473 1.06489 1.06070 1.57881 1.19698 0.93312 0.91217 0.90736 1.21362 0.91407 1.12592 1.31105 0.94448 1.25861 0.95459 1.00353 0.97213 1.70055 1.07203 1.36754 1.44781 0.85687 0.79223 0.79252 0.78600 1.19118 1.20437 1.17686 1.21021 0.95459 0.98978 0.93700 0.91719 1.21636 1.01086 0.99507 0.96885 1.21621 0.93435 1.00789 0.98134 0.92270 0.91874 0.92732 0.91286 0.92339 0.91747 0.93977 0.84888 0.99842 0.96466 0.92352 0.93906 0.91955 0.93699 0.92253 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.19 71.98 0.66 -1.50 16 2 C -0.09 -1.73 2.72 -10.79 -0.03 -1.76 16 3 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 4 C -0.10 -2.34 5.20 30.59 0.16 -2.18 16 5 C -0.15 -4.21 5.17 30.59 0.16 -4.05 16 6 C 0.09 2.91 1.91 44.91 0.09 2.99 16 7 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 8 N -0.68 -28.34 5.47 -495.57 -2.71 -31.05 16 9 C 0.18 8.82 4.31 85.56 0.37 9.19 16 10 C -0.53 -31.29 9.87 25.60 0.25 -31.03 16 11 H 0.04 2.46 8.06 -2.91 -0.02 2.43 16 12 C 0.01 0.51 5.47 84.66 0.46 0.98 16 13 N -0.95 -60.22 13.96 21.45 0.30 -59.92 16 14 Si 0.95 45.11 27.47 68.60 1.88 46.99 16 15 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 18 C -0.07 -1.96 2.43 -10.81 -0.03 -1.99 16 19 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.13 -3.83 9.04 71.98 0.65 -3.18 16 21 C -0.10 -2.14 4.48 30.58 0.14 -2.00 16 22 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 1.79 8.13 -2.39 -0.02 1.78 16 28 H 0.04 1.36 7.45 -2.38 -0.02 1.34 16 29 H 0.33 13.81 8.46 -89.70 -0.76 13.05 16 30 H -0.02 -0.78 6.49 -2.38 -0.02 -0.80 16 31 H 0.02 0.86 7.48 -2.39 -0.02 0.84 16 32 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 33 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.04 1.55 7.60 -2.39 -0.02 1.53 16 36 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.76 286.80 2.54 -62.21 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: 0.19 Total: 16.31 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 2.88 Total: -34.54 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -2.41 Total: -90.97 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 1.88 Total: 46.99 kcal Total: -64.76 2.54 -62.21 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226180040.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.528 kcal (2) G-P(sol) polarization free energy of solvation -64.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds