Wall clock time and date at job start Mon Mar 30 2020 02:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47181 * 2 1 4 4 C 1.50695 * 109.47426 * 239.99820 * 2 1 3 5 5 H 1.07999 * 120.00514 * 240.00579 * 4 2 1 6 6 C 1.37886 * 119.99931 * 59.99605 * 4 2 1 7 7 N 1.31517 * 119.99742 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99990 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46821 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.46948 * 300.00149 * 8 6 4 11 11 H 1.48495 * 109.47008 * 60.00355 * 8 6 4 12 12 N 1.46902 * 109.47113 * 119.99947 * 2 1 3 13 13 C 1.39774 * 111.00152 * 62.80877 * 12 2 1 14 14 C 1.54436 * 111.76836 * 189.12727 * 13 12 2 15 15 C 1.50751 * 109.02531 * 282.58967 * 14 13 12 16 16 C 1.54164 * 112.61175 * 93.02063 * 15 14 13 17 17 C 1.53825 * 111.96822 * 318.48598 * 16 15 14 18 18 C 1.47639 * 110.99827 * 191.70018 * 12 2 1 19 19 H 1.08992 * 109.74483 * 269.98571 * 18 12 2 20 20 C 1.53000 * 109.74523 * 30.70948 * 18 12 2 21 21 H 1.08996 * 109.47257 * 52.64900 * 1 2 3 22 22 H 1.09000 * 109.46968 * 172.65632 * 1 2 3 23 23 H 1.09005 * 109.47035 * 292.64680 * 1 2 3 24 24 H 0.96995 * 119.99762 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.02158 * 309.71580 * 13 12 2 26 26 H 1.08995 * 109.02097 * 68.61616 * 13 12 2 27 27 H 1.08993 * 109.54487 * 42.45541 * 14 13 12 28 28 H 1.09007 * 109.54142 * 162.63656 * 14 13 12 29 29 H 1.09009 * 108.85359 * 213.82721 * 15 14 13 30 30 H 1.09003 * 108.85397 * 332.31054 * 15 14 13 31 31 H 1.09001 * 108.98337 * 79.12813 * 16 15 14 32 32 H 1.09000 * 108.98365 * 197.84475 * 16 15 14 33 33 H 1.08996 * 109.04603 * 79.59714 * 17 16 15 34 34 H 1.09005 * 109.05148 * 198.49179 * 17 16 15 35 35 H 1.08998 * 109.47019 * 53.52798 * 20 18 12 36 36 H 1.08998 * 109.46859 * 173.52528 * 20 18 12 37 37 H 1.09002 * 109.46744 * 293.52603 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8269 -0.4200 -5.2204 10 1 3.8064 -1.1209 -4.0081 11 1 1.8259 -2.5203 -4.0076 12 7 2.0197 -0.6925 1.1995 13 6 1.6245 -2.0332 1.2003 14 6 1.9311 -2.7198 2.5492 15 6 3.4022 -3.0427 2.6131 16 6 4.2240 -1.9307 3.2948 17 6 3.7670 -0.5280 2.8589 18 6 3.4685 -0.4749 1.3816 19 1 4.0260 -1.2560 0.8649 20 6 3.8595 0.8953 0.8242 21 1 -0.3633 0.6234 -0.8169 22 1 -0.3633 -1.0192 -0.1314 23 1 -0.3633 0.3957 0.9485 24 1 0.7094 1.1617 -3.4844 25 1 0.5527 -2.0878 1.0094 26 1 2.1538 -2.5600 0.4064 27 1 1.6690 -2.0493 3.3675 28 1 1.3507 -3.6390 2.6307 29 1 3.5354 -3.9706 3.1695 30 1 3.7762 -3.1839 1.5990 31 1 4.1133 -2.0198 4.3755 32 1 5.2753 -2.0574 3.0360 33 1 2.8683 -0.2585 3.4135 34 1 4.5542 0.1901 3.0889 35 1 3.2273 1.6629 1.2705 36 1 4.9031 1.1002 1.0628 37 1 3.7266 0.8988 -0.2577 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000226733208.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:49 Heat of formation + Delta-G solvation = -20.268321 kcal Electronic energy + Delta-G solvation = -15428.429874 eV Core-core repulsion = 13204.663959 eV Total energy + Delta-G solvation = -2223.765915 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.66040 -36.48106 -34.25446 -34.01598 -30.82406 -28.83466 -27.28381 -26.40230 -24.07798 -22.74222 -20.76283 -19.95615 -18.03565 -17.14923 -16.55482 -16.16354 -15.62043 -15.31701 -14.88319 -14.29962 -14.03179 -13.42536 -13.32097 -13.19167 -12.95565 -12.91085 -12.58861 -12.46594 -12.24173 -12.01735 -12.00012 -11.57543 -11.37702 -11.29658 -11.02619 -10.90858 -10.84088 -10.41475 -8.74219 -7.99747 -6.21414 1.36109 1.37171 1.44121 2.40385 3.17768 3.44662 4.03117 4.03511 4.17815 4.37385 4.39855 4.53176 4.68997 4.71988 4.82865 4.95390 5.00540 5.03031 5.10190 5.11800 5.17905 5.26544 5.28274 5.35303 5.37567 5.42823 5.57507 5.61657 5.63653 5.69647 5.81193 6.07026 6.30530 6.48604 6.97928 7.11041 7.48885 8.94387 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.035372 B = 0.010488 C = 0.010374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.404724 B = 2669.173997 C = 2698.338305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.206 3.794 3 H 0.030 0.970 4 C -0.540 4.540 5 H 0.041 0.959 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.940 3.060 9 H -0.283 1.283 10 H -0.276 1.276 11 H -0.277 1.277 12 N -0.546 5.546 13 C 0.083 3.917 14 C -0.110 4.110 15 C -0.118 4.118 16 C -0.110 4.110 17 C -0.107 4.107 18 C 0.103 3.897 19 H 0.020 0.980 20 C -0.140 4.140 21 H 0.054 0.946 22 H 0.022 0.978 23 H 0.029 0.971 24 H 0.261 0.739 25 H 0.051 0.949 26 H -0.006 1.006 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.050 0.950 36 H 0.067 0.933 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 -4.425 9.883 11.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 H 0.048 0.952 4 C -0.579 4.579 5 H 0.059 0.941 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.766 3.234 9 H -0.208 1.208 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.270 5.270 13 C -0.047 4.047 14 C -0.148 4.148 15 C -0.155 4.155 16 C -0.148 4.148 17 C -0.145 4.145 18 C -0.005 4.005 19 H 0.038 0.962 20 C -0.197 4.197 21 H 0.073 0.927 22 H 0.041 0.959 23 H 0.048 0.952 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.012 0.988 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.053 0.947 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.542 -4.125 10.133 11.846 hybrid contribution 0.409 -0.695 -2.134 2.281 sum 4.951 -4.820 7.999 10.571 Atomic orbital electron populations 1.21651 0.98221 0.98985 0.98763 1.19239 0.91797 0.94088 0.84908 0.95216 1.21821 1.31038 1.12204 0.92832 0.94090 1.25542 0.95307 0.95584 1.01237 1.69998 1.37483 1.23765 1.23852 0.85901 0.78688 0.78858 0.79919 1.20791 1.20126 1.20285 1.59472 1.13483 1.13859 1.40186 1.20806 0.99119 0.89113 0.95639 1.21477 0.96497 0.99949 0.96893 1.21386 0.95145 0.99001 0.99984 1.21872 0.98943 0.93531 1.00414 1.21463 1.01351 0.97340 0.94386 1.21054 0.87522 0.95882 0.96005 0.96207 1.21929 1.00305 0.96671 1.00798 0.92686 0.95912 0.95189 0.93015 0.93105 0.98796 0.90971 0.90998 0.90787 0.94661 0.90639 0.92106 0.91625 0.91079 0.93086 0.91452 0.94021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.86 8.46 71.98 0.61 -5.25 16 2 C 0.21 10.37 1.82 44.17 0.08 10.45 16 3 H 0.03 1.63 5.48 -2.39 -0.01 1.62 16 4 C -0.54 -29.46 6.54 25.60 0.17 -29.30 16 5 H 0.04 2.30 6.44 -2.91 -0.02 2.28 16 6 C 0.02 1.27 5.30 84.66 0.45 1.72 16 7 N -0.91 -52.26 11.41 21.45 0.24 -52.02 16 8 Si 0.94 44.18 29.54 68.60 2.03 46.21 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 N -0.55 -23.21 3.88 -867.06 -3.36 -26.57 16 13 C 0.08 3.36 4.36 88.07 0.38 3.75 16 14 C -0.11 -3.36 5.65 30.35 0.17 -3.19 16 15 C -0.12 -3.25 5.32 30.26 0.16 -3.09 16 16 C -0.11 -2.76 5.91 31.27 0.18 -2.58 16 17 C -0.11 -3.18 4.98 30.16 0.15 -3.03 16 18 C 0.10 3.92 2.02 44.06 0.09 4.01 16 19 H 0.02 0.83 6.66 -2.39 -0.02 0.81 16 20 C -0.14 -5.41 7.64 71.98 0.55 -4.86 16 21 H 0.05 2.98 6.30 -2.39 -0.02 2.96 16 22 H 0.02 1.10 6.63 -2.39 -0.02 1.08 16 23 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 24 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 25 H 0.05 2.16 5.90 -2.39 -0.01 2.15 16 26 H -0.01 -0.27 5.85 -2.39 -0.01 -0.28 16 27 H 0.07 2.15 7.11 -2.39 -0.02 2.13 16 28 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 30 H 0.03 1.13 6.57 -2.39 -0.02 1.11 16 31 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 2.02 7.26 -2.39 -0.02 2.01 16 34 H 0.07 1.86 7.61 -2.38 -0.02 1.84 16 35 H 0.05 1.96 7.63 -2.39 -0.02 1.95 16 36 H 0.07 2.15 7.98 -2.39 -0.02 2.14 16 37 H 0.04 1.92 6.15 -2.39 -0.01 1.90 16 Total: -1.00 -58.10 266.75 2.93 -55.17 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.03 Total: 8.58 kcal Atomic # 6 Polarization: -34.36 SS G_CDS: 3.00 Total: -31.36 kcal Atomic # 7 Polarization: -75.47 SS G_CDS: -3.12 Total: -78.59 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -58.10 2.93 -55.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226733208.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.899 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds