Wall clock time and date at job start Mon Mar 30 2020 02:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09010 * 110.43125 * 2 1 4 4 C 1.54263 * 110.48551 * 122.53677 * 2 1 3 5 5 C 1.53876 * 106.63651 * 142.26709 * 4 2 1 6 6 C 1.54367 * 106.54765 * 0.04097 * 5 4 2 7 7 H 1.09000 * 110.51365 * 95.04354 * 6 5 4 8 8 C 1.53006 * 110.57590 * 217.62915 * 6 5 4 9 9 N 1.46899 * 109.46754 * 289.82607 * 8 6 5 10 10 C 1.46899 * 110.99450 * 179.97438 * 9 8 6 11 11 C 1.53005 * 109.46922 * 180.02562 * 10 9 8 12 12 C 1.50702 * 109.47265 * 179.97438 * 11 10 9 13 13 H 1.08001 * 119.99729 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00116 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99909 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 120.00080 * 0.02562 * 14 12 11 17 17 H 1.48501 * 109.47162 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.47241 * 209.99880 * 16 14 12 19 19 H 1.48497 * 109.47035 * 329.99827 * 16 14 12 20 20 C 1.54884 * 110.48991 * 237.31819 * 2 1 3 21 21 H 1.08994 * 109.47551 * 298.91114 * 1 2 3 22 22 H 1.09004 * 109.47167 * 58.91405 * 1 2 3 23 23 H 1.08997 * 109.47155 * 178.91159 * 1 2 3 24 24 H 1.09002 * 110.03499 * 261.57771 * 4 2 1 25 25 H 1.08995 * 110.03388 * 22.96226 * 4 2 1 26 26 H 1.09002 * 110.03233 * 119.31598 * 5 4 2 27 27 H 1.09003 * 110.02920 * 240.74130 * 5 4 2 28 28 H 1.08993 * 109.46711 * 49.82874 * 8 6 5 29 29 H 1.09003 * 109.47034 * 169.82620 * 8 6 5 30 30 H 1.00900 * 110.99782 * 56.05090 * 9 8 6 31 31 H 1.09001 * 109.47365 * 299.99790 * 10 9 8 32 32 H 1.08993 * 109.47501 * 60.00382 * 10 9 8 33 33 H 1.09000 * 109.47342 * 299.99931 * 11 10 9 34 34 H 1.09004 * 109.46920 * 60.00329 * 11 10 9 35 35 H 0.97005 * 119.99790 * 180.02562 * 15 14 12 36 36 H 1.09007 * 110.75453 * 321.69362 * 20 2 1 37 37 H 1.08998 * 110.75788 * 85.05881 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0699 -0.7772 1.2183 5 6 3.3163 -1.5404 0.7369 6 6 3.4907 -1.1988 -0.7584 7 1 4.1898 -0.3717 -0.8822 8 6 3.9706 -2.4249 -1.5377 9 7 5.3600 -2.7269 -1.1682 10 6 5.8553 -3.9015 -1.8982 11 6 7.3017 -4.1847 -1.4874 12 6 7.8097 -5.3901 -2.2358 13 1 7.1655 -5.9026 -2.9348 14 6 9.0972 -5.8378 -2.0289 15 7 9.5403 -6.8901 -2.6816 16 14 10.2117 -4.9508 -0.8204 17 1 10.0521 -5.5476 0.5300 18 1 11.6242 -5.0869 -1.2579 19 1 9.8447 -3.5127 -0.7724 20 6 2.0721 -0.7834 -1.2212 21 1 -0.3634 0.4968 0.8995 22 1 -0.3634 0.5306 -0.8801 23 1 -0.3633 -1.0274 -0.0195 24 1 2.3411 -0.0831 2.0138 25 1 1.3173 -1.4796 1.5765 26 1 4.1925 -1.2167 1.2988 27 1 3.1682 -2.6132 0.8607 28 1 3.3370 -3.2787 -1.2977 29 1 3.9152 -2.2204 -2.6069 30 1 5.4490 -2.8569 -0.1716 31 1 5.2347 -4.7655 -1.6603 32 1 5.8129 -3.7078 -2.9699 33 1 7.9226 -3.3209 -1.7249 34 1 7.3436 -4.3787 -0.4156 35 1 10.4460 -7.2053 -2.5358 36 1 1.4581 -1.6618 -1.4202 37 1 2.1251 -0.1407 -2.0999 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230419977.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:31 Heat of formation + Delta-G solvation = -38.029002 kcal Electronic energy + Delta-G solvation = -13820.456700 eV Core-core repulsion = 11595.920624 eV Total energy + Delta-G solvation = -2224.536076 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.85649 -35.82113 -33.07071 -31.65623 -29.85479 -28.77546 -25.83741 -23.99338 -22.67811 -20.54534 -19.99045 -19.35674 -16.72616 -16.33274 -15.36395 -14.56980 -14.33054 -13.92429 -13.52935 -13.31953 -13.21287 -12.90459 -12.51803 -12.40124 -11.96764 -11.37792 -11.07451 -11.01372 -10.95614 -10.75577 -10.66270 -10.51567 -10.38751 -10.02623 -9.82644 -9.62435 -9.20177 -8.51432 -7.88304 -6.02259 -4.00471 3.33951 3.41272 3.47845 4.39842 4.48560 4.52435 4.58301 4.88714 5.14111 5.21313 5.32263 5.35807 5.41120 5.50108 5.55123 5.62297 5.70119 5.74658 5.84304 5.92064 6.00186 6.01789 6.09382 6.19959 6.25579 6.31275 6.35642 6.49130 6.80911 7.17726 7.41287 7.66359 7.80203 7.95769 8.55801 9.01884 9.60281 11.11134 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.069997 B = 0.004843 C = 0.004654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 399.918796 B = 5780.108664 C = 6014.671300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.123 4.123 6 C -0.090 4.090 7 H 0.082 0.918 8 C 0.066 3.934 9 N -0.695 5.695 10 C 0.073 3.927 11 C -0.010 4.010 12 C -0.521 4.521 13 H 0.070 0.930 14 C 0.066 3.934 15 N -0.905 5.905 16 Si 0.882 3.118 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.263 1.263 20 C -0.115 4.115 21 H 0.051 0.949 22 H 0.053 0.947 23 H 0.054 0.946 24 H 0.059 0.941 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.334 0.666 31 H 0.020 0.980 32 H 0.064 0.936 33 H 0.025 0.975 34 H 0.008 0.992 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 13.422 6.665 21.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.090 0.910 4 C -0.157 4.157 5 C -0.161 4.161 6 C -0.109 4.109 7 H 0.100 0.900 8 C -0.064 4.064 9 N -0.326 5.326 10 C -0.056 4.056 11 C -0.048 4.048 12 C -0.559 4.559 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.187 1.187 20 C -0.153 4.153 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.151 0.849 31 H 0.038 0.962 32 H 0.082 0.918 33 H 0.043 0.957 34 H 0.026 0.974 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.509 13.747 6.186 21.629 hybrid contribution 0.224 -0.466 1.049 1.170 sum -15.285 13.281 7.236 21.503 Atomic orbital electron populations 1.21806 0.95281 1.01704 1.01336 1.21956 0.95182 0.99257 0.95246 0.90964 1.22206 0.97391 0.98712 0.97405 1.22240 0.97707 1.00070 0.96053 1.22049 0.96228 0.98369 0.94267 0.89989 1.21963 0.89342 0.95388 0.99682 1.60620 1.18995 1.41721 1.11227 1.21953 0.97382 0.88343 0.97879 1.19551 0.91867 0.97284 0.96087 1.21088 0.98668 1.11362 1.24831 0.91141 1.25013 0.97916 0.94732 0.95816 1.69922 1.17491 1.24516 1.42450 0.86739 0.79763 0.81136 0.81463 1.20399 1.21422 1.18746 1.22596 0.95855 0.99589 0.97228 0.92942 0.92814 0.92686 0.92206 0.92034 0.91674 0.92039 0.95815 0.91416 0.84923 0.96162 0.91794 0.95662 0.97357 0.92749 0.91477 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.11 37.16 0.34 -0.78 16 2 C -0.10 -0.88 3.46 -88.97 -0.31 -1.19 16 3 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 4 C -0.12 -1.13 6.37 -25.61 -0.16 -1.29 16 5 C -0.12 -1.36 5.71 -25.56 -0.15 -1.50 16 6 C -0.09 -1.07 3.09 -88.90 -0.27 -1.35 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.07 0.95 5.07 -3.82 -0.02 0.93 16 9 N -0.70 -12.14 6.50 -113.78 -0.74 -12.88 16 10 C 0.07 1.52 5.62 -3.82 -0.02 1.50 16 11 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 12 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 13 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 15 N -0.90 -28.38 13.96 55.43 0.77 -27.60 16 16 Si 0.88 22.21 27.47 -169.99 -4.67 17.54 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 C -0.11 -1.15 5.75 -24.74 -0.14 -1.29 16 21 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 22 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.56 7.84 -51.93 -0.41 0.15 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.71 7.72 -51.93 -0.40 0.31 16 28 H 0.02 0.34 7.96 -51.93 -0.41 -0.07 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.33 5.53 8.10 -39.29 -0.32 5.21 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 34 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 35 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 36 H 0.07 0.68 7.97 -51.93 -0.41 0.26 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 292.52 15.07 4.41 4.41 Total: -1.00 -30.44 292.52 -8.47 -38.91 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.96 Total: -1.33 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.29 Total: -19.05 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.03 Total: -40.48 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.44 -8.47 -38.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230419977.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.880 kcal (2) G-P(sol) polarization free energy of solvation -30.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds