Wall clock time and date at job start Mon Mar 30 2020 02:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.52998 * 109.47146 * 180.02562 * 13 12 2 15 15 H 1.09009 * 110.43231 * 54.29838 * 14 13 12 16 16 C 1.54890 * 110.48641 * 291.75779 * 14 13 12 17 17 C 1.54888 * 102.74622 * 203.37722 * 16 14 13 18 18 C 1.54269 * 104.19967 * 37.94410 * 17 16 14 19 19 H 1.08997 * 110.03207 * 95.71501 * 18 17 16 20 20 C 1.52991 * 110.03263 * 217.10668 * 18 17 16 21 21 C 1.54095 * 106.61698 * 336.27538 * 18 17 16 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 27 27 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 28 28 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 29 29 H 1.08994 * 110.75411 * 321.69169 * 16 14 13 30 30 H 1.09001 * 110.75084 * 85.06451 * 16 14 13 31 31 H 1.09006 * 110.48460 * 156.62099 * 17 16 14 32 32 H 1.09003 * 110.48912 * 279.12743 * 17 16 14 33 33 H 1.08994 * 109.47750 * 58.53996 * 20 18 17 34 34 H 1.08999 * 109.47386 * 178.54496 * 20 18 17 35 35 H 1.08999 * 109.47208 * 298.54043 * 20 18 17 36 36 H 1.08994 * 110.16125 * 240.87949 * 21 18 17 37 37 H 1.09000 * 110.00326 * 119.38396 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5951 -0.5329 -3.5745 15 1 1.9870 -1.4190 -3.7573 16 6 4.0819 -0.9250 -3.3880 17 6 4.5766 -1.0928 -4.8461 18 6 3.8589 0.0316 -5.6210 19 1 4.5092 0.9025 -5.7029 20 6 3.4652 -0.4612 -7.0148 21 6 2.5955 0.3865 -4.8132 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 2.9173 -1.1204 -1.0288 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.6305 -0.1300 -2.8830 30 1 4.1681 -1.8635 -2.8404 31 1 5.6576 -0.9630 -4.8995 32 1 4.2910 -2.0699 -5.2358 33 1 2.8165 -1.3322 -6.9226 34 1 2.9364 0.3312 -7.5445 35 1 4.3623 -0.7337 -7.5707 36 1 1.7033 0.2059 -5.4127 37 1 2.6324 1.4308 -4.5031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230420376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:40 Heat of formation + Delta-G solvation = -33.957576 kcal Electronic energy + Delta-G solvation = -14252.481047 eV Core-core repulsion = 12028.121521 eV Total energy + Delta-G solvation = -2224.359526 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.61214 -35.63828 -32.85296 -31.04554 -29.24086 -27.81261 -25.33962 -24.83751 -22.89717 -20.10545 -19.61344 -19.18404 -16.52904 -15.41813 -15.03444 -14.84784 -14.12738 -13.48671 -13.27883 -13.11105 -12.76207 -12.53820 -12.13911 -11.75905 -11.37380 -11.03624 -10.84214 -10.75715 -10.66297 -10.55349 -10.46039 -10.30888 -10.22128 -10.11006 -9.98192 -9.66473 -8.76307 -8.44836 -7.18320 -5.99818 -4.05985 3.30192 3.37884 3.42303 4.42329 4.68709 4.78260 4.84531 5.25940 5.32003 5.40681 5.51803 5.58691 5.67787 5.71867 5.82906 5.93070 5.98133 6.00901 6.06431 6.21306 6.25744 6.37661 6.40849 6.48246 6.63613 6.78974 6.94441 7.19027 7.29249 7.56690 7.81918 7.95171 8.32100 8.46340 8.74752 9.06135 9.59960 11.06635 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058581 B = 0.005944 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.851875 B = 4709.212799 C = 5026.701129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.210 3.790 3 H -0.001 1.001 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.689 5.689 13 C 0.068 3.932 14 C -0.088 4.088 15 H 0.078 0.922 16 C -0.121 4.121 17 C -0.119 4.119 18 C -0.097 4.097 19 H 0.066 0.934 20 C -0.143 4.143 21 C -0.116 4.116 22 H 0.079 0.921 23 H 0.031 0.969 24 H 0.003 0.997 25 H 0.260 0.740 26 H 0.329 0.671 27 H 0.060 0.940 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.062 0.938 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.923 -1.412 -14.051 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.210 1.210 12 N -0.320 5.320 13 C -0.062 4.062 14 C -0.107 4.107 15 H 0.096 0.904 16 C -0.159 4.159 17 C -0.157 4.157 18 C -0.116 4.116 19 H 0.085 0.915 20 C -0.201 4.201 21 C -0.154 4.154 22 H 0.098 0.902 23 H 0.050 0.950 24 H 0.022 0.978 25 H 0.070 0.930 26 H 0.146 0.854 27 H 0.079 0.921 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.080 0.920 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.209 -1.536 -14.071 14.767 hybrid contribution 1.010 0.199 1.125 1.525 sum 5.219 -1.337 -12.946 14.022 Atomic orbital electron populations 1.21704 0.97981 0.99254 0.99249 1.19103 0.92590 0.92296 0.85810 0.98336 1.21319 1.31240 1.12404 0.90513 0.92230 1.24929 0.95091 0.95014 0.99044 1.69913 1.36812 1.22963 1.23275 0.86476 0.78603 0.79619 0.82910 1.19755 1.21123 1.20985 1.60720 1.31997 1.33257 1.06067 1.21932 0.99285 0.93839 0.91123 1.22017 0.96004 0.98553 0.94091 0.90406 1.22549 0.95934 1.01512 0.95855 1.22432 0.99158 0.98298 0.95796 1.21776 0.96903 0.98149 0.94764 0.91525 1.21880 1.00883 1.00989 0.96313 1.22304 0.97104 0.99776 0.96249 0.90202 0.95029 0.97775 0.93035 0.85363 0.92148 0.96515 0.91798 0.91334 0.92301 0.91775 0.92616 0.93006 0.93145 0.91967 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.48 2.60 -68.86 -0.18 5.30 16 3 H 0.00 -0.03 7.80 -51.93 -0.40 -0.43 16 4 C -0.52 -14.47 8.59 -34.44 -0.30 -14.77 16 5 H 0.06 1.65 7.62 -52.49 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.90 11.32 55.43 0.63 -25.27 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.69 -15.19 6.30 -107.95 -0.68 -15.87 16 13 C 0.07 1.27 4.82 -3.83 -0.02 1.25 16 14 C -0.09 -1.32 3.10 -88.96 -0.28 -1.59 16 15 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 16 C -0.12 -1.67 5.62 -24.74 -0.14 -1.81 16 17 C -0.12 -1.37 6.36 -25.07 -0.16 -1.53 16 18 C -0.10 -1.08 3.51 -89.39 -0.31 -1.40 16 19 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 20 C -0.14 -1.37 8.84 37.15 0.33 -1.04 16 21 C -0.12 -1.48 6.04 -25.50 -0.15 -1.63 16 22 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 25 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.33 7.07 7.41 -39.29 -0.29 6.78 16 27 H 0.06 1.16 7.44 -51.93 -0.39 0.78 16 28 H 0.02 0.32 7.97 -51.93 -0.41 -0.09 16 29 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 30 H 0.07 0.97 8.02 -51.93 -0.42 0.55 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.71 7.86 -51.93 -0.41 0.30 16 33 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.75 7.68 -51.93 -0.40 0.35 16 37 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -28.50 288.90 -8.42 -36.92 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.74 Total: 1.81 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -0.96 Total: -18.43 kcal Atomic # 7 Polarization: -41.09 SS G_CDS: -0.05 Total: -41.14 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.50 -8.42 -36.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230420376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.959 kcal (2) G-P(sol) polarization free energy of solvation -28.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds