Wall clock time and date at job start Mon Mar 30 2020 02:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46897 * 111.00172 * 84.99810 * 12 2 1 14 14 C 1.52998 * 109.47146 * 180.02562 * 13 12 2 15 15 H 1.09009 * 110.43231 * 54.29838 * 14 13 12 16 16 C 1.54890 * 110.48641 * 291.75779 * 14 13 12 17 17 C 1.54888 * 102.74622 * 203.37722 * 16 14 13 18 18 C 1.54269 * 104.19967 * 37.94410 * 17 16 14 19 19 H 1.08997 * 110.03207 * 95.71501 * 18 17 16 20 20 C 1.52991 * 110.03263 * 217.10668 * 18 17 16 21 21 C 1.54095 * 106.61698 * 336.27538 * 18 17 16 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 26 26 H 1.00896 * 110.99793 * 208.95333 * 12 2 1 27 27 H 1.09005 * 109.47066 * 299.99968 * 13 12 2 28 28 H 1.09001 * 109.47085 * 59.99954 * 13 12 2 29 29 H 1.08994 * 110.75411 * 321.69169 * 16 14 13 30 30 H 1.09001 * 110.75084 * 85.06451 * 16 14 13 31 31 H 1.09006 * 110.48460 * 156.62099 * 17 16 14 32 32 H 1.09003 * 110.48912 * 279.12743 * 17 16 14 33 33 H 1.08994 * 109.47750 * 58.53996 * 20 18 17 34 34 H 1.08999 * 109.47386 * 178.54496 * 20 18 17 35 35 H 1.08999 * 109.47208 * 298.54043 * 20 18 17 36 36 H 1.08994 * 110.16125 * 240.87949 * 21 18 17 37 37 H 1.09000 * 110.00326 * 119.38396 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0197 -0.6924 -1.1995 13 6 2.0825 0.2227 -2.3469 14 6 2.5951 -0.5329 -3.5745 15 1 1.9870 -1.4190 -3.7573 16 6 4.0819 -0.9250 -3.3880 17 6 4.5766 -1.0928 -4.8461 18 6 3.8589 0.0316 -5.6210 19 1 4.5092 0.9025 -5.7029 20 6 3.4652 -0.4612 -7.0148 21 6 2.5955 0.3865 -4.8132 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7096 1.1617 3.4844 26 1 2.9173 -1.1204 -1.0288 27 1 1.0870 0.6164 -2.5525 28 1 2.7588 1.0463 -2.1182 29 1 4.6305 -0.1300 -2.8830 30 1 4.1681 -1.8635 -2.8404 31 1 5.6576 -0.9630 -4.8995 32 1 4.2910 -2.0699 -5.2358 33 1 2.8165 -1.3322 -6.9226 34 1 2.9364 0.3312 -7.5445 35 1 4.3623 -0.7337 -7.5707 36 1 1.7033 0.2059 -5.4127 37 1 2.6324 1.4308 -4.5031 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230420376.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:39 Heat of formation + Delta-G solvation = -50.410840 kcal Electronic energy + Delta-G solvation = -14253.194514 eV Core-core repulsion = 12028.121521 eV Total energy + Delta-G solvation = -2225.072993 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.75294 -37.42833 -34.68817 -32.51311 -30.49067 -29.37971 -27.37106 -26.10078 -24.26514 -21.80282 -21.03274 -20.26724 -18.55263 -16.91672 -16.65207 -16.10685 -15.78356 -15.14572 -14.62107 -14.29291 -14.17344 -13.84960 -13.53194 -13.25259 -12.96833 -12.84420 -12.63452 -12.36030 -12.21215 -12.11944 -11.79394 -11.54902 -11.52116 -11.41445 -11.26261 -11.17466 -10.85197 -10.58937 -9.05418 -8.14374 -6.29042 1.41036 1.42530 1.54824 2.41031 3.14005 3.54328 3.73850 3.81356 3.95623 4.35598 4.44205 4.58661 4.61667 4.65190 4.76853 4.78682 4.82732 4.87836 4.96668 5.05778 5.06335 5.15831 5.18628 5.21858 5.27591 5.37883 5.40610 5.45151 5.57989 5.63126 5.67794 5.85291 6.20893 6.47878 6.78212 7.00772 7.41726 8.91789 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058581 B = 0.005944 C = 0.005569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.851875 B = 4709.212799 C = 5026.701129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.212 3.788 3 H -0.035 1.035 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.279 1.279 12 N -0.686 5.686 13 C 0.071 3.929 14 C -0.082 4.082 15 H 0.074 0.926 16 C -0.122 4.122 17 C -0.113 4.113 18 C -0.095 4.095 19 H 0.072 0.928 20 C -0.140 4.140 21 C -0.114 4.114 22 H 0.057 0.943 23 H 0.028 0.972 24 H 0.020 0.980 25 H 0.263 0.737 26 H 0.332 0.668 27 H 0.052 0.948 28 H 0.008 0.992 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.750 -2.261 -14.990 16.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.104 3.896 3 H -0.017 1.017 4 C -0.576 4.576 5 H 0.077 0.923 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.791 3.209 9 H -0.190 1.190 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.317 5.317 13 C -0.059 4.059 14 C -0.101 4.101 15 H 0.092 0.908 16 C -0.160 4.160 17 C -0.150 4.150 18 C -0.114 4.114 19 H 0.090 0.910 20 C -0.198 4.198 21 C -0.152 4.152 22 H 0.076 0.924 23 H 0.047 0.953 24 H 0.039 0.961 25 H 0.072 0.928 26 H 0.149 0.851 27 H 0.071 0.929 28 H 0.026 0.974 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.041 -2.389 -15.034 16.035 hybrid contribution 0.736 0.501 1.397 1.656 sum 5.777 -1.887 -13.637 14.930 Atomic orbital electron populations 1.21533 0.97772 0.98838 0.98925 1.18938 0.92779 0.90658 0.87242 1.01734 1.21619 1.31684 1.12671 0.91622 0.92267 1.25774 0.95124 0.95679 1.02156 1.70038 1.37541 1.24131 1.24151 0.85396 0.78137 0.78579 0.78836 1.18989 1.20543 1.20489 1.60657 1.32186 1.33440 1.05409 1.21986 0.98894 0.93584 0.91437 1.21940 0.96568 0.98374 0.93227 0.90786 1.22535 0.95005 1.00818 0.97648 1.22409 0.99960 0.98887 0.93777 1.21769 0.95923 0.98287 0.95372 0.90992 1.21852 1.01521 1.01114 0.95282 1.22293 0.98628 0.98840 0.95411 0.92449 0.95279 0.96134 0.92808 0.85053 0.92916 0.97425 0.92774 0.91869 0.91029 0.90993 0.92715 0.92361 0.91927 0.91094 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.86 9.19 71.98 0.66 -5.19 16 2 C 0.21 11.33 2.60 44.17 0.11 11.45 16 3 H -0.03 -2.06 7.80 -2.39 -0.02 -2.08 16 4 C -0.54 -30.40 8.59 25.60 0.22 -30.18 16 5 H 0.06 3.27 7.62 -2.91 -0.02 3.25 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -54.05 11.32 21.45 0.24 -53.81 16 8 Si 0.97 44.04 29.54 68.60 2.03 46.07 16 9 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 12 N -0.69 -30.50 6.30 -495.45 -3.12 -33.62 16 13 C 0.07 2.65 4.82 86.30 0.42 3.07 16 14 C -0.08 -2.40 3.10 -9.72 -0.03 -2.43 16 15 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 16 C -0.12 -3.25 5.62 31.88 0.18 -3.08 16 17 C -0.11 -2.33 6.36 31.67 0.20 -2.13 16 18 C -0.09 -1.88 3.51 -10.00 -0.04 -1.92 16 19 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 20 C -0.14 -2.28 8.84 71.98 0.64 -1.64 16 21 C -0.11 -2.71 6.04 31.39 0.19 -2.52 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.02 0.95 7.45 -2.38 -0.02 0.93 16 25 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 26 H 0.33 14.36 7.41 -89.70 -0.66 13.70 16 27 H 0.05 2.04 7.44 -2.38 -0.02 2.02 16 28 H 0.01 0.30 7.97 -2.39 -0.02 0.28 16 29 H 0.05 1.53 8.00 -2.39 -0.02 1.52 16 30 H 0.06 1.73 8.02 -2.39 -0.02 1.71 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.07 1.39 7.86 -2.39 -0.02 1.37 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.07 1.57 7.68 -2.39 -0.02 1.55 16 37 H 0.06 1.41 7.84 -2.39 -0.02 1.39 16 Total: -1.00 -60.25 288.90 2.49 -57.75 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.35 Total: 17.07 kcal Atomic # 6 Polarization: -36.47 SS G_CDS: 3.00 Total: -33.46 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: -2.88 Total: -87.43 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -60.25 2.49 -57.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230420376.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.344 kcal (2) G-P(sol) polarization free energy of solvation -60.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds