Wall clock time and date at job start Mon Mar 30 2020 02:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46561 * 2 1 4 4 C 1.50697 * 109.46767 * 119.99365 * 2 1 3 5 5 H 1.08002 * 119.99434 * 114.48069 * 4 2 1 6 6 C 1.37875 * 120.00325 * 294.47844 * 4 2 1 7 7 N 1.31514 * 120.00052 * 164.98262 * 6 4 2 8 8 Si 1.86792 * 119.99983 * 344.70085 * 6 4 2 9 9 H 1.48500 * 109.47405 * 270.27841 * 8 6 4 10 10 H 1.48502 * 109.47172 * 30.27379 * 8 6 4 11 11 H 1.48504 * 109.47175 * 150.27760 * 8 6 4 12 12 N 1.46899 * 109.47206 * 239.99756 * 2 1 3 13 13 C 1.46897 * 111.00033 * 84.99754 * 12 2 1 14 14 C 1.53003 * 109.46898 * 180.02562 * 13 12 2 15 15 H 1.09000 * 110.01741 * 305.70141 * 14 13 12 16 16 C 1.53870 * 110.03172 * 67.09658 * 14 13 12 17 17 C 1.54269 * 106.60014 * 119.28252 * 16 14 13 18 18 C 1.54892 * 104.19320 * 23.61003 * 17 16 14 19 19 H 1.09002 * 110.75771 * 80.55844 * 18 17 16 20 20 C 1.52997 * 110.75254 * 203.74092 * 18 17 16 21 21 C 1.54265 * 110.03020 * 184.31124 * 14 13 12 22 22 H 1.09000 * 109.47053 * 173.54448 * 1 2 3 23 23 H 1.08995 * 109.47173 * 293.54773 * 1 2 3 24 24 H 1.09003 * 109.47032 * 53.54727 * 1 2 3 25 25 H 0.97004 * 120.00067 * 354.62511 * 7 6 4 26 26 H 1.00907 * 110.99634 * 321.04487 * 12 2 1 27 27 H 1.08997 * 109.47036 * 300.00002 * 13 12 2 28 28 H 1.08999 * 109.47117 * 60.00227 * 13 12 2 29 29 H 1.09001 * 110.03008 * 238.56664 * 16 14 13 30 30 H 1.08997 * 110.03598 * 359.94693 * 16 14 13 31 31 H 1.08998 * 110.48636 * 142.28585 * 17 16 14 32 32 H 1.08995 * 110.48465 * 264.92753 * 17 16 14 33 33 H 1.09003 * 109.47214 * 58.54731 * 20 18 17 34 34 H 1.09002 * 109.47219 * 178.54188 * 20 18 17 35 35 H 1.09001 * 109.47611 * 298.54701 * 20 18 17 36 36 H 1.09005 * 110.48894 * 335.78690 * 21 14 13 37 37 H 1.09002 * 110.48517 * 98.42872 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.5777 -1.6375 1.1340 6 6 1.7956 -0.1765 2.4796 7 7 1.9619 -0.9172 3.5535 8 14 1.2464 1.6010 2.6468 9 1 2.4386 2.4785 2.7644 10 1 0.4610 1.9913 1.4485 11 1 0.4031 1.7464 3.8605 12 7 2.0198 -0.6925 -1.1994 13 6 2.0825 0.2225 -2.3469 14 6 2.5951 -0.5334 -3.5744 15 1 3.5451 -1.0164 -3.3454 16 6 1.5619 -1.5850 -4.0153 17 6 1.1426 -1.2151 -5.4531 18 6 2.3348 -0.3884 -5.9956 19 1 3.1404 -1.0437 -6.3268 20 6 1.8843 0.5308 -7.1326 21 6 2.7688 0.4390 -4.7593 22 1 -0.3633 -1.0212 -0.1155 23 1 -0.3633 0.4105 0.9420 24 1 -0.3633 0.6106 -0.8266 25 1 2.1750 -1.8594 3.4646 26 1 1.4496 -1.4980 -1.4099 27 1 1.0871 0.6161 -2.5525 28 1 2.7589 1.0461 -2.1183 29 1 2.0108 -2.5782 -4.0010 30 1 0.6958 -1.5575 -3.3542 31 1 0.9983 -2.1145 -6.0517 32 1 0.2341 -0.6130 -5.4425 33 1 1.1014 1.1981 -6.7719 34 1 2.7323 1.1206 -7.4808 35 1 1.4980 -0.0711 -7.9552 36 1 2.1233 1.3088 -4.6368 37 1 3.8107 0.7459 -4.8513 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230420381.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:45 Heat of formation + Delta-G solvation = -30.753727 kcal Electronic energy + Delta-G solvation = -14347.947743 eV Core-core repulsion = 12123.727147 eV Total energy + Delta-G solvation = -2224.220596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.75438 -35.93946 -32.84912 -31.36372 -29.47301 -28.19680 -25.25731 -24.55631 -23.03538 -20.17650 -19.67827 -19.23589 -17.40136 -16.12000 -14.83267 -14.71617 -13.98917 -13.66041 -13.47015 -13.15850 -12.89145 -12.62400 -12.13558 -11.97575 -11.75052 -11.53872 -11.18590 -10.91384 -10.80816 -10.55263 -10.52526 -10.40481 -10.22901 -10.09338 -10.01769 -9.53793 -8.83803 -8.22485 -7.34703 -6.34511 -3.95295 3.44055 3.45806 3.60854 4.55468 4.56136 4.68497 4.75240 5.18943 5.32004 5.34095 5.35829 5.49626 5.55966 5.67844 5.72281 5.75426 5.87945 5.90167 5.96088 6.08852 6.13966 6.19115 6.29310 6.33310 6.38810 6.44513 6.55075 6.64959 6.68812 6.91973 7.23354 7.88796 8.35161 8.43924 8.53890 9.08995 9.72011 11.03204 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.058412 B = 0.006300 C = 0.006109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.236729 B = 4443.559894 C = 4582.569247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.186 3.814 3 H 0.026 0.974 4 C -0.579 4.579 5 H 0.062 0.938 6 C 0.027 3.973 7 N -0.913 5.913 8 Si 1.043 2.957 9 H -0.287 1.287 10 H -0.275 1.275 11 H -0.287 1.287 12 N -0.676 5.676 13 C 0.064 3.936 14 C -0.090 4.090 15 H 0.078 0.922 16 C -0.120 4.120 17 C -0.119 4.119 18 C -0.098 4.098 19 H 0.073 0.927 20 C -0.143 4.143 21 C -0.114 4.114 22 H 0.042 0.958 23 H 0.054 0.946 24 H 0.019 0.981 25 H 0.267 0.733 26 H 0.327 0.673 27 H 0.017 0.983 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.065 0.935 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 2.505 -18.413 18.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.077 3.923 3 H 0.044 0.956 4 C -0.618 4.618 5 H 0.080 0.920 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.872 3.128 9 H -0.214 1.214 10 H -0.201 1.201 11 H -0.213 1.213 12 N -0.305 5.305 13 C -0.066 4.066 14 C -0.109 4.109 15 H 0.096 0.904 16 C -0.158 4.158 17 C -0.157 4.157 18 C -0.117 4.117 19 H 0.091 0.909 20 C -0.200 4.200 21 C -0.152 4.152 22 H 0.061 0.939 23 H 0.073 0.927 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.144 0.856 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.353 3.767 -17.114 17.575 hybrid contribution -0.637 -1.116 -1.256 1.796 sum -1.990 2.651 -18.369 18.666 Atomic orbital electron populations 1.22844 1.01344 0.99533 0.99623 1.19559 0.88837 0.94589 0.89295 0.95604 1.22012 1.38593 1.10903 0.90274 0.91991 1.25681 0.94759 1.05235 0.92056 1.70793 1.45086 1.08266 1.30648 0.84126 0.77053 0.75998 0.75670 1.21367 1.20052 1.21321 1.60733 1.57893 1.08905 1.03017 1.22037 0.98043 0.95749 0.90743 1.21798 0.99334 0.95646 0.94105 0.90397 1.22191 0.98929 0.98932 0.95726 1.22424 0.97837 0.99232 0.96181 1.22112 0.97786 0.96871 0.94928 0.90885 1.21761 1.01022 0.99281 0.97978 1.22482 1.00941 0.98009 0.93782 0.93870 0.92721 0.96224 0.92269 0.85555 0.96510 0.91901 0.91943 0.91969 0.92189 0.91920 0.92723 0.92868 0.92979 0.91659 0.91896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.89 8.46 37.16 0.31 -3.58 16 2 C 0.19 4.55 2.12 -68.86 -0.15 4.41 16 3 H 0.03 0.65 6.43 -51.93 -0.33 0.32 16 4 C -0.58 -16.75 9.12 -34.44 -0.31 -17.06 16 5 H 0.06 1.96 8.06 -52.49 -0.42 1.54 16 6 C 0.03 0.78 5.32 -17.82 -0.09 0.69 16 7 N -0.91 -28.62 13.69 55.43 0.76 -27.86 16 8 Si 1.04 25.61 26.17 -169.99 -4.45 21.16 16 9 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 10 H -0.27 -6.20 5.54 56.52 0.31 -5.89 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 N -0.68 -14.38 6.23 -107.95 -0.67 -15.06 16 13 C 0.06 1.12 4.60 -3.82 -0.02 1.11 16 14 C -0.09 -1.29 3.16 -89.50 -0.28 -1.57 16 15 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 16 C -0.12 -1.58 5.96 -25.61 -0.15 -1.73 16 17 C -0.12 -1.32 6.28 -25.07 -0.16 -1.47 16 18 C -0.10 -1.03 3.49 -88.59 -0.31 -1.34 16 19 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 20 C -0.14 -1.28 9.27 37.16 0.34 -0.94 16 21 C -0.11 -1.36 5.81 -25.03 -0.15 -1.51 16 22 H 0.04 0.93 8.01 -51.93 -0.42 0.51 16 23 H 0.05 1.26 5.07 -51.93 -0.26 1.00 16 24 H 0.02 0.38 7.63 -51.93 -0.40 -0.02 16 25 H 0.27 8.37 8.73 -40.82 -0.36 8.01 16 26 H 0.33 6.64 7.10 -39.29 -0.28 6.36 16 27 H 0.02 0.29 7.56 -51.93 -0.39 -0.10 16 28 H 0.06 1.14 8.06 -51.93 -0.42 0.72 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 0.88 6.93 -51.93 -0.36 0.52 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.69 8.05 -51.93 -0.42 0.27 16 33 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.06 0.79 7.75 -51.93 -0.40 0.38 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 283.94 15.07 4.28 4.28 Total: -1.00 -30.13 283.94 -7.77 -37.90 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -6.72 Total: 2.57 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -0.96 Total: -23.00 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 0.09 Total: -42.92 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.45 Total: 21.16 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.13 -7.77 -37.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230420381.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.150 kcal (2) G-P(sol) polarization free energy of solvation -30.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds