Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.01932 * 2 1 4 4 C 1.54271 * 110.07308 * 238.58322 * 2 1 3 5 5 C 1.54889 * 104.19486 * 264.30664 * 4 2 1 6 6 C 1.54896 * 102.74742 * 322.05568 * 5 4 2 7 7 C 1.53873 * 110.03093 * 121.39247 * 2 1 3 8 8 H 1.09001 * 110.03197 * 359.97438 * 7 2 1 9 9 C 1.53003 * 110.03171 * 238.61512 * 7 2 1 10 10 N 1.46903 * 109.46899 * 174.99721 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 H 1.09000 * 109.46862 * 298.61261 * 1 2 3 22 22 H 1.08998 * 109.46662 * 58.60365 * 1 2 3 23 23 H 1.09000 * 109.47349 * 178.60758 * 1 2 3 24 24 H 1.09003 * 110.48153 * 22.98263 * 4 2 1 25 25 H 1.08990 * 110.48435 * 145.49563 * 4 2 1 26 26 H 1.08999 * 110.75897 * 80.36801 * 5 4 2 27 27 H 1.09002 * 110.75763 * 203.56172 * 5 4 2 28 28 H 1.08998 * 110.48816 * 279.26438 * 6 5 4 29 29 H 1.08996 * 110.48648 * 156.62318 * 6 5 4 30 30 H 1.09003 * 109.46902 * 55.00550 * 9 7 2 31 31 H 1.08993 * 109.47505 * 295.00045 * 9 7 2 32 32 H 1.00897 * 110.99542 * 56.05200 * 10 9 7 33 33 H 1.09001 * 109.47392 * 60.00807 * 11 10 9 34 34 H 1.09001 * 109.47520 * 300.00529 * 11 10 9 35 35 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 36 36 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0595 -0.7553 -1.2366 5 6 2.3298 -2.1898 -0.7185 6 6 2.8885 -1.9397 0.7044 7 6 2.0571 -0.7530 1.2340 8 1 1.2229 -1.1181 1.8331 9 6 2.9399 0.1716 2.0747 10 7 3.3384 -0.5200 3.3080 11 6 4.1884 0.3397 4.1424 12 6 4.5828 -0.4134 5.4145 13 6 5.4543 0.4687 6.2708 14 1 5.7026 1.4666 5.9405 15 6 5.9357 0.0015 7.4754 16 7 5.6339 -1.2137 7.8774 17 14 7.0166 1.0947 8.5364 18 1 6.1654 1.8812 9.4649 19 1 7.9556 0.2519 9.3195 20 1 7.7884 2.0201 7.6684 21 1 -0.3633 0.4921 0.9022 22 1 -0.3632 0.5354 -0.8772 23 1 -0.3634 -1.0273 -0.0250 24 1 1.3075 -0.7700 -2.0255 25 1 2.9807 -0.2979 -1.5973 26 1 1.4052 -2.7653 -0.6748 27 1 3.0675 -2.6935 -1.3432 28 1 3.9448 -1.6750 0.6584 29 1 2.7415 -2.8187 1.3318 30 1 2.3834 1.0740 2.3278 31 1 3.8296 0.4409 1.5055 32 1 3.7997 -1.3929 3.1001 33 1 3.6403 1.2431 4.4098 34 1 5.0868 0.6107 3.5877 35 1 3.6846 -0.6846 5.9694 36 1 5.1311 -1.3166 5.1468 37 1 5.9728 -1.5426 8.7246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230676331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -40.328306 kcal Electronic energy + Delta-G solvation = -13918.315990 eV Core-core repulsion = 11693.680209 eV Total energy + Delta-G solvation = -2224.635781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.96407 -35.54879 -32.93693 -31.04992 -30.51417 -27.98274 -25.83359 -24.12969 -22.40054 -20.61634 -20.28836 -19.17379 -16.29707 -15.79877 -15.30953 -15.01349 -14.40801 -13.72658 -13.49870 -13.30193 -12.79105 -12.67301 -12.42523 -12.10868 -11.96847 -11.11257 -11.02743 -10.89975 -10.77103 -10.66666 -10.57819 -10.45631 -10.41713 -10.37677 -9.92483 -9.30662 -9.10873 -8.32760 -7.74457 -5.97282 -3.99789 3.33829 3.39674 3.43016 4.43292 4.53212 4.58240 4.69980 5.01164 5.30053 5.32049 5.38574 5.39497 5.45037 5.58271 5.63710 5.68482 5.79518 5.84599 5.91249 6.05771 6.07632 6.10875 6.17218 6.31177 6.34823 6.40124 6.47488 6.59709 7.02356 7.54609 7.77221 7.87286 8.02370 8.12740 8.46970 9.07567 9.63846 11.14244 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067929 B = 0.004774 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.096742 B = 5863.772561 C = 5996.792894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.120 4.120 5 C -0.124 4.124 6 C -0.122 4.122 7 C -0.086 4.086 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.692 5.692 11 C 0.065 3.935 12 C 0.025 3.975 13 C -0.521 4.521 14 H 0.054 0.946 15 C 0.058 3.942 16 N -0.894 5.894 17 Si 0.893 3.107 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.021 0.979 32 H 0.335 0.665 33 H 0.057 0.943 34 H 0.013 0.987 35 H 0.025 0.975 36 H 0.013 0.987 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.572 0.140 -16.818 18.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.161 4.161 6 C -0.160 4.160 7 C -0.105 4.105 8 H 0.100 0.900 9 C -0.064 4.064 10 N -0.323 5.323 11 C -0.063 4.063 12 C -0.013 4.013 13 C -0.560 4.560 14 H 0.072 0.928 15 C -0.144 4.144 16 N -0.533 5.533 17 Si 0.720 3.280 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.075 0.925 22 H 0.069 0.931 23 H 0.073 0.927 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.083 0.917 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.039 0.961 32 H 0.152 0.848 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.043 0.957 36 H 0.031 0.969 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.118 0.194 -16.327 18.235 hybrid contribution 1.484 0.573 0.194 1.602 sum -6.634 0.767 -16.134 17.461 Atomic orbital electron populations 1.21862 0.95111 1.01595 1.01374 1.21769 0.95613 0.99410 0.94472 0.91232 1.22423 1.00510 0.95758 0.97090 1.22473 1.00564 0.96579 0.96498 1.22448 0.99349 0.98362 0.95803 1.21893 0.98429 0.95089 0.95108 0.90043 1.22046 0.97040 0.96810 0.90508 1.60595 1.47497 1.07404 1.16804 1.22150 0.92615 0.96293 0.95228 1.19071 0.96537 0.95189 0.90466 1.21190 1.30619 1.00298 1.03908 0.92791 1.25001 0.96513 0.95072 0.97769 1.69972 1.45450 1.16294 1.21592 0.86589 0.80421 0.80449 0.80493 1.20624 1.21220 1.19938 0.92550 0.93142 0.92729 0.91967 0.91925 0.91721 0.91998 0.91872 0.91379 0.91706 0.96086 0.84774 0.92465 0.96841 0.95666 0.96855 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.83 37.16 0.33 -1.04 16 2 C -0.09 -1.00 3.15 -89.50 -0.28 -1.28 16 3 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 4 C -0.12 -1.15 6.37 -25.07 -0.16 -1.31 16 5 C -0.12 -1.22 6.91 -24.74 -0.17 -1.39 16 6 C -0.12 -1.44 5.56 -25.07 -0.14 -1.58 16 7 C -0.09 -1.09 2.81 -89.50 -0.25 -1.34 16 8 H 0.08 1.11 7.67 -51.93 -0.40 0.71 16 9 C 0.07 1.00 4.80 -3.82 -0.02 0.98 16 10 N -0.69 -12.89 6.50 -113.77 -0.74 -13.63 16 11 C 0.07 1.44 5.62 -3.82 -0.02 1.41 16 12 C 0.02 0.67 5.23 -27.88 -0.15 0.52 16 13 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 14 H 0.05 1.52 7.74 -52.48 -0.41 1.11 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 17 Si 0.89 21.96 29.54 -169.99 -5.02 16.94 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.06 0.53 7.84 -51.93 -0.41 0.13 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.78 7.76 -51.93 -0.40 0.38 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.33 6.04 7.97 -39.29 -0.31 5.73 16 33 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 295.18 15.07 4.45 4.45 Total: -1.00 -29.97 295.18 -8.80 -38.77 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.95 Total: -1.02 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -1.27 Total: -18.89 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.00 Total: -40.25 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.97 -8.80 -38.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.557 kcal (2) G-P(sol) polarization free energy of solvation -29.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds