Wall clock time and date at job start Mon Mar 30 2020 02:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.01932 * 2 1 4 4 C 1.54271 * 110.07308 * 238.58322 * 2 1 3 5 5 C 1.54889 * 104.19486 * 264.30664 * 4 2 1 6 6 C 1.54896 * 102.74742 * 322.05568 * 5 4 2 7 7 C 1.53873 * 110.03093 * 121.39247 * 2 1 3 8 8 H 1.09001 * 110.03197 * 359.97438 * 7 2 1 9 9 C 1.53003 * 110.03171 * 238.61512 * 7 2 1 10 10 N 1.46903 * 109.46899 * 174.99721 * 9 7 2 11 11 C 1.46898 * 110.99673 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47184 * 180.02562 * 12 11 10 14 14 H 1.08005 * 119.99819 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00046 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00192 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99979 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47418 * 89.99710 * 17 15 13 19 19 H 1.48498 * 109.47091 * 209.99770 * 17 15 13 20 20 H 1.48508 * 109.47394 * 329.99535 * 17 15 13 21 21 H 1.09000 * 109.46862 * 298.61261 * 1 2 3 22 22 H 1.08998 * 109.46662 * 58.60365 * 1 2 3 23 23 H 1.09000 * 109.47349 * 178.60758 * 1 2 3 24 24 H 1.09003 * 110.48153 * 22.98263 * 4 2 1 25 25 H 1.08990 * 110.48435 * 145.49563 * 4 2 1 26 26 H 1.08999 * 110.75897 * 80.36801 * 5 4 2 27 27 H 1.09002 * 110.75763 * 203.56172 * 5 4 2 28 28 H 1.08998 * 110.48816 * 279.26438 * 6 5 4 29 29 H 1.08996 * 110.48648 * 156.62318 * 6 5 4 30 30 H 1.09003 * 109.46902 * 55.00550 * 9 7 2 31 31 H 1.08993 * 109.47505 * 295.00045 * 9 7 2 32 32 H 1.00897 * 110.99542 * 56.05200 * 10 9 7 33 33 H 1.09001 * 109.47392 * 60.00807 * 11 10 9 34 34 H 1.09001 * 109.47520 * 300.00529 * 11 10 9 35 35 H 1.09001 * 109.47002 * 299.99782 * 12 11 10 36 36 H 1.08993 * 109.46955 * 60.00219 * 12 11 10 37 37 H 0.96996 * 120.00505 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9032 1.0241 0.0000 4 6 2.0595 -0.7553 -1.2366 5 6 2.3298 -2.1898 -0.7185 6 6 2.8885 -1.9397 0.7044 7 6 2.0571 -0.7530 1.2340 8 1 1.2229 -1.1181 1.8331 9 6 2.9399 0.1716 2.0747 10 7 3.3384 -0.5200 3.3080 11 6 4.1884 0.3397 4.1424 12 6 4.5828 -0.4134 5.4145 13 6 5.4543 0.4687 6.2708 14 1 5.7026 1.4666 5.9405 15 6 5.9357 0.0015 7.4754 16 7 5.6339 -1.2137 7.8774 17 14 7.0166 1.0947 8.5364 18 1 6.1654 1.8812 9.4649 19 1 7.9556 0.2519 9.3195 20 1 7.7884 2.0201 7.6684 21 1 -0.3633 0.4921 0.9022 22 1 -0.3632 0.5354 -0.8772 23 1 -0.3634 -1.0273 -0.0250 24 1 1.3075 -0.7700 -2.0255 25 1 2.9807 -0.2979 -1.5973 26 1 1.4052 -2.7653 -0.6748 27 1 3.0675 -2.6935 -1.3432 28 1 3.9448 -1.6750 0.6584 29 1 2.7415 -2.8187 1.3318 30 1 2.3834 1.0740 2.3278 31 1 3.8296 0.4409 1.5055 32 1 3.7997 -1.3929 3.1001 33 1 3.6403 1.2431 4.4098 34 1 5.0868 0.6107 3.5877 35 1 3.6846 -0.6846 5.9694 36 1 5.1311 -1.3166 5.1468 37 1 5.9728 -1.5426 8.7246 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230676331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:28 Heat of formation + Delta-G solvation = -58.223260 kcal Electronic energy + Delta-G solvation = -13919.091973 eV Core-core repulsion = 11693.680209 eV Total energy + Delta-G solvation = -2225.411765 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.93706 -37.13936 -34.99661 -32.18046 -31.86175 -29.51992 -26.88473 -25.88984 -23.64664 -22.50998 -21.24151 -20.12988 -18.51328 -17.12508 -16.49739 -16.25488 -16.10596 -15.22551 -14.93208 -14.26589 -14.17189 -14.05387 -13.78584 -13.34185 -13.05975 -13.04591 -12.80372 -12.48412 -12.00615 -11.87166 -11.79676 -11.51094 -11.45311 -11.42585 -11.36067 -11.27933 -11.06374 -10.57515 -9.29541 -8.21212 -6.33259 1.39993 1.41986 1.52968 2.40126 3.12068 3.31273 3.69776 3.77638 3.90370 4.31559 4.39465 4.48223 4.55438 4.57823 4.59314 4.63264 4.71099 4.78656 4.88227 4.99434 5.03023 5.04522 5.12696 5.22109 5.26719 5.32850 5.42705 5.43309 5.51525 5.62062 5.65287 5.77498 6.13306 6.27774 6.54033 6.83732 7.36206 8.91141 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.067929 B = 0.004774 C = 0.004668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 412.096742 B = 5863.772561 C = 5996.792894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.117 4.117 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.082 4.082 8 H 0.070 0.930 9 C 0.068 3.932 10 N -0.698 5.698 11 C 0.083 3.917 12 C 0.031 3.969 13 C -0.547 4.547 14 H 0.060 0.940 15 C 0.001 3.999 16 N -0.932 5.932 17 Si 0.969 3.031 18 H -0.271 1.271 19 H -0.280 1.280 20 H -0.263 1.263 21 H 0.048 0.952 22 H 0.065 0.935 23 H 0.056 0.944 24 H 0.078 0.922 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.025 0.975 32 H 0.337 0.663 33 H 0.056 0.944 34 H 0.017 0.983 35 H -0.006 1.006 36 H -0.009 1.009 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 1.062 -17.915 19.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.154 4.154 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.101 4.101 8 H 0.089 0.911 9 C -0.061 4.061 10 N -0.329 5.329 11 C -0.046 4.046 12 C -0.006 4.006 13 C -0.585 4.585 14 H 0.078 0.922 15 C -0.197 4.197 16 N -0.572 5.572 17 Si 0.793 3.207 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.187 1.187 21 H 0.067 0.933 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.096 0.904 25 H 0.082 0.918 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.044 0.956 32 H 0.155 0.845 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.012 0.988 36 H 0.009 0.991 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.043 1.121 -17.447 19.245 hybrid contribution 1.425 0.246 0.524 1.538 sum -6.618 1.366 -16.923 18.223 Atomic orbital electron populations 1.21842 0.94192 1.01940 1.01749 1.21759 0.96376 0.99127 0.93856 0.91373 1.22417 1.01035 0.95113 0.96846 1.22461 1.01004 0.97098 0.95073 1.22449 0.98885 0.97693 0.97207 1.21849 0.97620 0.95124 0.95502 0.91132 1.22124 0.97580 0.97134 0.89297 1.60523 1.46510 1.07345 1.18520 1.21785 0.93236 0.95860 0.93735 1.18926 0.94641 0.94730 0.92310 1.21613 1.31240 1.00876 1.04790 0.92181 1.25992 0.97901 0.96570 0.99243 1.70107 1.46575 1.18249 1.22268 0.85393 0.78393 0.78461 0.78452 1.19683 1.20567 1.18710 0.93299 0.91618 0.92470 0.90365 0.91764 0.91083 0.91001 0.92586 0.92056 0.91831 0.95644 0.84493 0.92507 0.96524 0.98768 0.99070 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 8.83 71.98 0.64 -1.78 16 2 C -0.09 -1.80 3.15 -10.07 -0.03 -1.83 16 3 H 0.07 1.36 7.67 -2.39 -0.02 1.34 16 4 C -0.12 -1.95 6.37 31.67 0.20 -1.75 16 5 C -0.12 -2.10 6.91 31.89 0.22 -1.88 16 6 C -0.12 -2.83 5.56 31.67 0.18 -2.65 16 7 C -0.08 -2.00 2.81 -10.07 -0.03 -2.03 16 8 H 0.07 1.88 7.67 -2.39 -0.02 1.86 16 9 C 0.07 2.02 4.80 86.30 0.41 2.43 16 10 N -0.70 -26.18 6.50 -513.87 -3.34 -29.52 16 11 C 0.08 3.67 5.62 86.31 0.49 4.15 16 12 C 0.03 1.74 5.23 29.85 0.16 1.89 16 13 C -0.55 -32.06 9.11 25.60 0.23 -31.82 16 14 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 15 C 0.00 0.05 5.46 84.65 0.46 0.52 16 16 N -0.93 -57.87 13.29 21.45 0.28 -57.59 16 17 Si 0.97 44.86 29.54 68.60 2.03 46.88 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 22 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.08 1.09 7.84 -2.39 -0.02 1.07 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.06 1.34 7.76 -2.39 -0.02 1.33 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.03 0.75 8.00 -2.39 -0.02 0.73 16 32 H 0.34 12.36 7.97 -89.70 -0.71 11.65 16 33 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 35 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 36 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 37 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -63.86 295.18 2.18 -61.68 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.29 Total: 13.30 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: 2.93 Total: -34.75 kcal Atomic # 7 Polarization: -84.06 SS G_CDS: -3.06 Total: -87.11 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.88 kcal Total: -63.86 2.18 -61.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -63.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds