Wall clock time and date at job start Mon Mar 30 2020 02:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.01031 * 2 1 4 4 C 1.54265 * 110.03376 * 121.43995 * 2 1 3 5 5 C 1.54890 * 104.19358 * 142.89562 * 4 2 1 6 6 C 1.54894 * 102.74813 * 322.05537 * 5 4 2 7 7 C 1.53870 * 110.02858 * 238.61040 * 2 1 3 8 8 H 1.09000 * 110.03284 * 121.38310 * 7 2 1 9 9 C 1.52997 * 110.03686 * 359.97438 * 7 2 1 10 10 N 1.46899 * 109.47254 * 174.99996 * 9 7 2 11 11 C 1.46904 * 111.00029 * 179.97438 * 10 9 7 12 12 C 1.52997 * 109.46950 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.47092 * 180.02562 * 12 11 10 14 14 H 1.08009 * 119.99873 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31519 * 119.99652 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00237 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47105 * 89.99867 * 17 15 13 19 19 H 1.48491 * 109.47273 * 210.00139 * 17 15 13 20 20 H 1.48503 * 109.46704 * 330.00145 * 17 15 13 21 21 H 1.08998 * 109.46934 * 181.39307 * 1 2 3 22 22 H 1.09003 * 109.47211 * 301.38893 * 1 2 3 23 23 H 1.08996 * 109.47441 * 61.38846 * 1 2 3 24 24 H 1.09000 * 110.48786 * 261.57354 * 4 2 1 25 25 H 1.09005 * 110.48342 * 24.21783 * 4 2 1 26 26 H 1.08998 * 110.75426 * 80.37434 * 5 4 2 27 27 H 1.09006 * 110.75333 * 203.74371 * 5 4 2 28 28 H 1.08994 * 110.48714 * 279.26294 * 6 5 4 29 29 H 1.08998 * 110.48108 * 156.61627 * 6 5 4 30 30 H 1.09002 * 109.47153 * 54.99992 * 9 7 2 31 31 H 1.09001 * 109.46832 * 295.00183 * 9 7 2 32 32 H 1.00902 * 111.00582 * 303.95797 * 10 9 7 33 33 H 1.08995 * 109.47167 * 300.00240 * 11 10 9 34 34 H 1.09003 * 109.46442 * 60.00214 * 11 10 9 35 35 H 1.09005 * 109.47424 * 300.00229 * 12 11 10 36 36 H 1.09004 * 109.47266 * 59.99979 * 12 11 10 37 37 H 0.96998 * 119.99638 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7560 1.2365 5 6 3.3138 -1.5010 0.7184 6 6 2.8875 -1.9403 -0.7044 7 6 2.0570 -0.7530 -1.2341 8 1 2.6860 -0.0943 -1.8330 9 6 0.8861 -1.2664 -2.0744 10 7 1.3994 -1.8776 -3.3077 11 6 0.3007 -2.3836 -4.1413 12 6 0.8733 -3.0118 -5.4134 13 6 -0.2538 -3.5304 -6.2688 14 1 -1.2764 -3.4222 -5.9383 15 6 0.0203 -4.1429 -7.4732 16 7 -0.9635 -4.5950 -8.2199 17 14 1.7888 -4.3293 -8.0451 18 1 2.3363 -5.6174 -7.5488 19 1 1.8336 -4.3115 -9.5293 20 1 2.6023 -3.2073 -7.5118 21 1 -0.3633 -1.0274 0.0250 22 1 -0.3634 0.5353 0.8773 23 1 -0.3634 0.4921 -0.9021 24 1 2.3298 -0.0544 2.0254 25 1 1.3143 -1.4667 1.5960 26 1 4.1710 -0.8292 0.6747 27 1 3.5326 -2.3684 1.3412 28 1 2.2772 -2.8423 -0.6584 29 1 3.7637 -2.1030 -1.3319 30 1 0.2283 -0.4350 -2.3274 31 1 0.3289 -2.0103 -1.5049 32 1 1.9737 -1.2266 -3.8221 33 1 -0.2602 -3.1353 -3.5859 34 1 -0.3615 -1.5600 -4.4086 35 1 1.4345 -2.2604 -5.9689 36 1 1.5353 -3.8354 -5.1456 37 1 -0.7706 -5.0255 -9.0675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230676335.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:31 Heat of formation + Delta-G solvation = -31.271581 kcal Electronic energy + Delta-G solvation = -14067.134134 eV Core-core repulsion = 11842.891082 eV Total energy + Delta-G solvation = -2224.243052 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 211.163 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.10053 -35.61261 -32.87719 -31.46504 -30.62598 -28.35972 -25.14862 -24.44810 -22.65236 -20.72126 -20.41512 -18.50925 -16.78524 -16.11213 -15.39154 -14.67809 -14.32080 -14.02177 -13.67083 -13.56569 -13.03239 -12.55554 -12.34811 -12.21854 -11.79139 -11.26128 -11.09395 -11.01893 -10.79767 -10.72681 -10.68092 -10.54290 -10.22342 -10.04319 -9.76271 -9.61935 -9.19826 -8.51227 -7.83117 -6.02243 -4.00339 3.34746 3.41281 3.46480 4.46497 4.48457 4.57515 4.66423 4.92851 5.27141 5.28543 5.32585 5.38046 5.47693 5.57000 5.60437 5.66418 5.76939 5.85512 5.94659 5.98581 6.00555 6.11243 6.22648 6.26951 6.31619 6.37900 6.40465 6.54876 6.82029 7.18468 7.42790 7.66395 7.80917 7.96879 8.55962 9.01999 9.60394 11.11214 Molecular weight = 211.16amu Principal moments of inertia in cm(-1) A = 0.054659 B = 0.005524 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.146533 B = 5067.577873 C = 5409.520716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 H 0.067 0.933 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.105 4.105 7 C -0.087 4.087 8 H 0.067 0.933 9 C 0.064 3.936 10 N -0.696 5.696 11 C 0.074 3.926 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.265 1.265 21 H 0.059 0.941 22 H 0.048 0.952 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.070 0.930 32 H 0.333 0.667 33 H 0.062 0.938 34 H 0.020 0.980 35 H 0.012 0.988 36 H 0.020 0.980 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.061 8.854 17.166 20.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.157 4.157 5 C -0.167 4.167 6 C -0.143 4.143 7 C -0.106 4.106 8 H 0.085 0.915 9 C -0.066 4.066 10 N -0.326 5.326 11 C -0.054 4.054 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.711 3.289 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 H 0.078 0.922 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.149 0.851 33 H 0.081 0.919 34 H 0.038 0.962 35 H 0.031 0.969 36 H 0.039 0.961 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.122 8.150 17.287 20.395 hybrid contribution 0.417 0.681 -0.819 1.144 sum 7.539 8.831 16.468 20.150 Atomic orbital electron populations 1.21989 0.95239 1.02097 1.01310 1.21753 0.95732 0.98951 0.94643 0.91457 1.22443 0.97527 0.98808 0.96906 1.22541 0.97380 0.99580 0.97177 1.22277 0.99527 0.97858 0.94628 1.21803 0.96618 0.96706 0.95437 0.91487 1.22204 0.95459 0.97019 0.91884 1.60579 1.23295 1.41382 1.07342 1.21929 0.91434 0.97625 0.94420 1.19545 0.97078 0.95922 0.92219 1.21092 0.93901 1.37618 1.03319 0.91163 1.25012 0.97155 0.94870 0.96417 1.69922 1.31512 1.40010 1.12959 0.86723 0.85637 0.79130 0.77453 1.20240 1.21522 1.19004 0.92160 0.93292 0.92332 0.92240 0.91605 0.91966 0.91930 0.91210 0.91683 0.95520 0.91194 0.85058 0.91920 0.96202 0.96931 0.96130 0.92756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 7.88 37.16 0.29 -1.21 16 2 C -0.09 -0.94 3.50 -89.50 -0.31 -1.25 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 C -0.12 -1.12 6.36 -25.07 -0.16 -1.28 16 5 C -0.13 -1.27 6.91 -24.74 -0.17 -1.44 16 6 C -0.11 -1.25 6.19 -25.07 -0.16 -1.41 16 7 C -0.09 -1.03 3.09 -89.50 -0.28 -1.31 16 8 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 9 C 0.06 0.90 3.79 -3.83 -0.01 0.89 16 10 N -0.70 -11.95 6.32 -113.78 -0.72 -12.67 16 11 C 0.07 1.54 5.62 -3.82 -0.02 1.52 16 12 C -0.01 -0.24 4.30 -27.89 -0.12 -0.36 16 13 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 14 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.36 13.96 55.43 0.77 -27.58 16 17 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 18 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 21 H 0.06 0.64 6.85 -51.93 -0.36 0.28 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.06 0.61 6.62 -51.93 -0.34 0.27 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.07 0.62 7.84 -51.93 -0.41 0.22 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.92 7.76 -51.93 -0.40 0.51 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.03 0.38 6.42 -51.93 -0.33 0.04 16 31 H 0.07 1.02 6.91 -51.93 -0.36 0.66 16 32 H 0.33 5.46 8.73 -39.29 -0.34 5.11 16 33 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 36 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 286.75 15.07 4.32 4.32 Total: -1.00 -30.27 286.75 -8.36 -38.64 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.70 Total: -0.76 kcal Atomic # 6 Polarization: -18.14 SS G_CDS: -1.37 Total: -19.51 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.05 Total: -40.26 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.27 -8.36 -38.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230676335.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.364 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds